UHGV-0196344 (vOTU-073190)

Viral Genome: UHGV-0196344

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0196344
vOTU ID	vOTU-073190
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781723_a1_ct19013_vs1@Siphoviridae__sp._ctQhw1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.07 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.77
Jumbo phage	No

Genome content
Genome length (bp)	31,377
GC content	59.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	91%
Average CDS length (bps)	597.69
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0196344_1	phrog_119	73.0	3.7e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196344_1	UniRef90_G9YSB5	153.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0196344_1	86416.Clopa_0335	77.0	9.11e-17	HNH nucleases	N/A
Pfam	UHGV-0196344_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0196344_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0196344_2	phrog_3584	73.5	2.9e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0196344_2	742738.HMPREF9460_04063	229.0	0	N/A	N/A
structural_annotation	UHGV-0196344_2	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0196344_12	K03497	72.8	1e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0196344_12	phrog_27290	385.2	0	N/A	unknown function
UniRef90	UHGV-0196344_12	UniRef90_UPI001C029D7C	351.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0196344_12	742738.HMPREF9460_00856	259.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0196344_12	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0196344_12	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0196344_12	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0196344_13	K03496	166.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0196344_13	phrog_164	134.0	1e-39	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196344_13	UniRef90_UPI000318E277	280.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0196344_13	1007096.BAGW01000033_gene1614	270.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0196344_13	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0196344_13	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0196344_13	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0196344_14	K02314	254.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0196344_14	phrog_19	222.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196344_14	UniRef90_UPI00195856D7	402.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0196344_14	1226322.HMPREF1545_00095	265.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0196344_14	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0196344_14	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0196344_14	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0196344_14	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_15	phrog_270	116.5	2.9e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196344_15	UniRef90_UPI001F3D92C2	180.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0196344_15	742738.HMPREF9460_00851	161.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0196344_15	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0196344_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0196344_15	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_17	phrog_6499	113.0	1.3e-33	transcriptional regulator	transcription regulation
UniRef90	UHGV-0196344_17	UniRef90_G9YL68	135.0	1.35e-37	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0196344_17	742738.HMPREF9460_00847	135.0	1.58e-38	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0196344_17	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0196344_17	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0196344_17	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0196344_18	K22300	57.0	4.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0196344_18	phrog_3	48.2	0.00000000000041	transcriptional repressor	transcription regulation
UniRef90	UHGV-0196344_18	UniRef90_UPI000F0D19B9	62.8	0.0000000000145	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0196344_18	1384066.JAGT01000001_gene1702	50.8	0.000000416	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0196344_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0196344_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0196344_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_19	phrog_8	40.5	0.000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-0196344_19	UniRef90_A0A3A8W4L6	102.0	4.53e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0196344_19	1226322.HMPREF1545_00085	96.3	2.88e-25	sequence-specific DNA binding	N/A
COG	UHGV-0196344_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0196344_19	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196344_20	PF14947,NF041230,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196344_22	UniRef90_A0A8J6JEY0	105.0	2.67e-27	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0196344_22	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0196344_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0196344_22	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0196344_23	K19167	49.7	0.000000000000079	abiQ; protein AbiQ	N/A
PHROG	UHGV-0196344_23	phrog_8049	60.3	2.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0196344_23	927704.SELR_26510	89.0	9.54e-21	N/A	N/A
KOfam	UHGV-0196344_25	K23779	46.6	0.00000000000063	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-0196344_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0196344_25	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0196344_25	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196344_26	1262449.CP6013_2082	156.0	0	N/A	N/A
structural_annotation	UHGV-0196344_26	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-0196344_27	K14059	163.0	0	int; integrase	N/A
PHROG	UHGV-0196344_27	phrog_1	154.7	0	integrase	integration and excision
UniRef90	UHGV-0196344_27	UniRef90_UPI0013EF4EFD	264.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0196344_27	1226322.HMPREF1545_00144	247.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0196344_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0196344_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0196344_27	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0196344_28	K22519	43.9	0.0000000000029	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	N/A
PHROG	UHGV-0196344_28	phrog_1493	64.2	2.7e-18	endolysin	lysis
UniRef90	UHGV-0196344_28	UniRef90_A0A8D9PDS4	387.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0196344_28	1226322.HMPREF1545_01953	81.3	0.0000000000000036	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0196344_28	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0196344_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0196344_28	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_29	phrog_199	78.6	6.1e-23	holin	lysis
UniRef90	UHGV-0196344_29	UniRef90_R6DA24	173.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0196344_29	1160721.RBI_I01565	121.0	4.06e-33	Bacteriophage holin family	N/A
Pfam	UHGV-0196344_29	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0196344_29	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0196344_29	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0196344_29	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_30	phrog_134	46.6	0.00000000000042	N/A	unknown function
UniRef90	UHGV-0196344_30	UniRef90_A0A845N2N7	53.1	0.0000000175	XkdX family protein	N/A
eggNOG-mapper	UHGV-0196344_30	1151292.QEW_0674	48.1	0.000000278	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0196344_30	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0196344_30	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196344_32	1408437.JNJN01000040_gene189	92.4	5.39e-23	N/A	N/A
eggNOG-mapper	UHGV-0196344_33	2754.EH55_00535	68.6	0.00000000063	N/A	N/A
structural_annotation	UHGV-0196344_33	PF10651,TIGR02059	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_34	phrog_1067	286.4	0	minor head protein	head and packaging
UniRef90	UHGV-0196344_34	UniRef90_A0A316NPB5	399.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0196344_34	1123263.AUKY01000068_gene489	310.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0196344_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0196344_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0196344_34	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0196344_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_35	phrog_33	67.5	3.2e-19	distal tail protein Dit	tail
UniRef90	UHGV-0196344_35	UniRef90_A0A173Z1X4	173.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0196344_35	1160721.RBI_I01575	136.0	8.56e-37	Phage tail protein	N/A
COG	UHGV-0196344_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0196344_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_36	phrog_6900	258.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0196344_36	UniRef90_A0A373CK98	296.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0196344_36	1216932.CM240_0625	320.0	0	tape measure	N/A
COG	UHGV-0196344_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0196344_36	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_39	phrog_88	84.3	1.4e-24	major tail protein	tail
UniRef90	UHGV-0196344_39	UniRef90_G9YSC5	124.0	2.55e-32	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0196344_39	33035.JPJF01000039_gene278	73.6	0.00000000000021	N/A	N/A
NCBIFam	UHGV-0196344_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0196344_39	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_40	phrog_5	42.5	0.000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0196344_40	UniRef90_R6UNR2	136.0	4.35e-38	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0196344_40	908340.HMPREF9406_2573	136.0	7.3e-39	N/A	N/A
structural_annotation	UHGV-0196344_40	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196344_41	1235798.C817_04588	85.1	7.48e-20	N/A	N/A
structural_annotation	UHGV-0196344_41	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_42	phrog_19734	120.2	1.1e-35	N/A	unknown function
UniRef90	UHGV-0196344_42	UniRef90_A0A6I7GNS7	130.0	2.51e-36	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0196344_42	349161.Dred_2602	84.0	3.34e-19	N/A	N/A
structural_annotation	UHGV-0196344_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_43	phrog_749	65.7	6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0196344_43	349161.Dred_2603	85.5	1.9e-20	N/A	N/A
PHROG	UHGV-0196344_44	phrog_10	157.2	0	major head protein	head and packaging
UniRef90	UHGV-0196344_44	UniRef90_G9YSC0	715.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0196344_44	1235792.C808_00086	440.0	0	Phage capsid family	N/A
Pfam	UHGV-0196344_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0196344_44	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0196344_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0196344_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0196344_44	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0196344_45	K01358	131.0	1.2e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0196344_45	phrog_94	243.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0196344_45	UniRef90_A0A1Y4BT12	334.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0196344_45	349161.Dred_2605	293.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0196344_45	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0196344_45	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0196344_45	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_46	phrog_12	118.6	5.7e-36	portal protein	head and packaging
UniRef90	UHGV-0196344_46	UniRef90_G9YSB8	522.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0196344_46	349161.Dred_2606	306.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0196344_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0196344_46	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0196344_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0196344_46	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_47	phrog_9	244.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0196344_47	UniRef90_A0A6I7GGF0	929.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0196344_47	1235792.C808_00083	621.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0196344_47	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0196344_47	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0196344_47	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0196344_48	phrog_5110	62.1	7.2e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0196344_48	UniRef90_UPI00195E8788	113.0	3.57e-30	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0196344_48	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0196344_48	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A