UHGV-0196597 (vOTU-047350)

Viral Genome: UHGV-0196597

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0196597
vOTU ID	vOTU-047350
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781741_a1_ct50161_vs1@Siphoviridae__sp._ctIg21
Associated BioSample	SAMN09781741
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9736
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.74
Jumbo phage	No

Genome content
Genome length (bp)	30,741
GC content	56.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	95%
Average CDS length (bps)	561.29
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0196597_1	K24213	49.2	0.000000000000066	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0196597_1	phrog_4433	273.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0196597_1	33035.JPJF01000122_gene2458	134.0	1.31e-34	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0196597_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0196597_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0196597_1	NF000066	N/A	N/A	N/A	N/A
KOfam	UHGV-0196597_4	K02086	52.3	0.0000000000000073	dnaD; DNA replication protein	N/A
PHROG	UHGV-0196597_4	phrog_186	56.9	4.2e-16	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0196597_4	485913.Krac_12129	53.9	0.00000229	TIGRFAM primosome, DnaD subunit	N/A
Pfam	UHGV-0196597_4	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0196597_4	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0196597_4	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0196597_5	phrog_6969	50.5	0.000000000000036	N/A	unknown function
UniRef90	UHGV-0196597_5	UniRef90_UPI00195AB05B	55.5	0.000000243	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0196597_5	1232446.BAIE02000002_gene816	81.3	3.23e-17	N/A	N/A
KOfam	UHGV-0196597_6	K03111	122.8	4.2e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0196597_6	phrog_44	128.2	5.9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196597_6	UniRef90_R6E141	129.0	9.46e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0196597_6	748224.HMPREF9436_03359	119.0	1.09e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0196597_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0196597_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0196597_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0196597_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0196597_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_7	phrog_7566	62.5	5.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0196597_7	693746.OBV_24070	80.9	2.42e-18	N/A	N/A
PHROG	UHGV-0196597_8	phrog_72	53.0	0.0000000000000061	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196597_8	UniRef90_UPI001F3F3E5C	107.0	3.3e-26	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0196597_8	1507.HMPREF0262_00432	99.0	1.19e-23	N/A	N/A
structural_annotation	UHGV-0196597_8	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_9	phrog_155	161.5	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196597_9	UniRef90_A0A843HP81	190.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0196597_9	1329250.WOSG25_420010	178.0	0	ERF superfamily	N/A
Pfam	UHGV-0196597_9	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0196597_9	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0196597_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0196597_15	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_16	phrog_8	45.1	0.000000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0196597_16	UniRef90_A0A4Z0XXV8	79.3	2.72e-16	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-0196597_16	1378168.N510_01712	70.9	0.000000000000977	N/A	N/A
eggNOG-mapper	UHGV-0196597_17	1462527.CCDM010000001_gene1872	66.2	0.000000000249	N/A	N/A
KOfam	UHGV-0196597_18	K06400	363.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0196597_18	phrog_95	335.7	0	integrase	integration and excision
UniRef90	UHGV-0196597_18	UniRef90_UPI000B3A7453	497.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0196597_18	1235835.C814_03413	442.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0196597_18	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0196597_18	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0196597_18	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0196597_18	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0196597_18	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0196597_19	K07729	50.1	0.00000000000006	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0196597_19	phrog_3	47.2	0.00000000000084	transcriptional repressor	transcription regulation
UniRef90	UHGV-0196597_19	UniRef90_UPI0018DBA295	56.2	0.00000000568	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0196597_19	443254.Marpi_0298	48.9	0.000000699	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0196597_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0196597_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0196597_19	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0196597_21	K19304	76.0	5.7e-22	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0196597_21	phrog_6700	57.5	5.5e-17	endolysin	lysis
UniRef90	UHGV-0196597_21	UniRef90_A0A847VZM8	149.0	3.19e-40	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0196597_21	1150399.AQYK01000002_gene2810	82.0	0.00000000000000243	Peptidase family M23	N/A
Pfam	UHGV-0196597_21	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0196597_21	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
eggNOG-mapper	UHGV-0196597_22	1304866.K413DRAFT_4747	49.3	0.00000864	N/A	N/A
PHROG	UHGV-0196597_23	phrog_1863	52.9	0.000000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0196597_23	693746.OBV_18260	86.3	5.89e-21	N/A	N/A
COG	UHGV-0196597_25	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0196597_26	phrog_5417	51.2	0.000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0196597_26	1094508.Tsac_2414	66.6	0.0000000000104	N/A	N/A
Pfam	UHGV-0196597_26	PF12571	N/A	N/A	Phage tail-collar fibre protein	DUF3751
structural_annotation	UHGV-0196597_26	PF12571	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196597_27	509191.AEDB02000075_gene2803	110.0	6.93e-23	N/A	N/A
structural_annotation	UHGV-0196597_27	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_28	phrog_9959	148.1	4.2039e-44	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0196597_28	411470.RUMGNA_02228	157.0	2.27e-37	tape measure	N/A
Pfam	UHGV-0196597_28	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0196597_28	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0196597_28	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0196597_28	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_29	phrog_706	130.9	5.6e-39	N/A	unknown function
UniRef90	UHGV-0196597_29	UniRef90_UPI000E52BFC1	127.0	1.52e-33	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0196597_29	665959.HMPREF1013_00192	78.2	0.00000000000000333	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0196597_29	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0196597_29	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196597_30	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_31	phrog_820	121.6	4.1e-36	major tail protein	tail
UniRef90	UHGV-0196597_31	UniRef90_A0A3A6EPU8	147.0	2.21994e-41	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0196597_31	428125.CLOLEP_00178	211.0	0	Belongs to the glycosyl hydrolase family 6	N/A
COG	UHGV-0196597_31	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196597_31	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196597_32	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_33	phrog_556	59.4	6.3e-17	minor head protein	head and packaging
Pfam	UHGV-0196597_33	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0196597_33	PF11114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196597_34	UniRef90_UPI001D06E7F2	67.8	0.00000000000453	minor capsid protein	N/A
structural_annotation	UHGV-0196597_34	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_35	phrog_541	66.2	4.9e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0196597_35	1231057.AMGD01000018_gene3617	52.0	0.00000133	N/A	N/A
PHROG	UHGV-0196597_36	phrog_422	304.0	0	major head protein	head and packaging
UniRef90	UHGV-0196597_36	UniRef90_A0A316T938	372.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0196597_36	428125.CLOLEP_00183	386.0	0	COG NOG28280 non supervised orthologous group	N/A
structural_annotation	UHGV-0196597_36	PF19821,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_40	phrog_581	252.8	0	minor head protein	head and packaging
UniRef90	UHGV-0196597_40	UniRef90_A7VTB0	267.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0196597_40	428125.CLOLEP_01802	267.0	0	N/A	N/A
Pfam	UHGV-0196597_40	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0196597_40	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196597_40	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_41	phrog_533	401.9	0	portal protein	head and packaging
UniRef90	UHGV-0196597_41	UniRef90_UPI001898C571	647.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0196597_41	428125.CLOLEP_01803	641.0	0	N/A	N/A
Pfam	UHGV-0196597_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0196597_41	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0196597_41	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0196597_42	K06909	112.3	5.7e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0196597_42	phrog_2	122.1	8.2e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0196597_42	UniRef90_A0A847YTD2	501.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0196597_42	1449050.JNLE01000003_gene3895	352.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0196597_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0196597_42	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-0196597_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0196597_42	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0196597_44	K03497	48.1	0.00000000000014	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0196597_44	phrog_21498	281.9	0	N/A	unknown function
UniRef90	UHGV-0196597_44	UniRef90_A0A7X2P836	278.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0196597_44	469378.Ccur_02830	265.0	0	DNA binding	N/A
PADLOC	UHGV-0196597_44	MTase_II_00015	93.1	3.8e-27	Type II methyltransferase	RM
Pfam	UHGV-0196597_44	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0196597_44	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0196597_44	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_45	phrog_36	53.9	0.0000000000000033	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0196597_45	580331.Thit_1400	62.8	0.000000000206	N/A	N/A
structural_annotation	UHGV-0196597_45	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_47	phrog_757	195.5	0	DNA methyltransferase	other
UniRef90	UHGV-0196597_47	UniRef90_UPI00189BA758	339.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0196597_47	397290.C810_01487	337.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0196597_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0196597_47	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_49	phrog_3136	66.4	3.9e-19	N/A	unknown function
UniRef90	UHGV-0196597_49	UniRef90_A0A6N7TMC2	72.4	0.00000000000026	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0196597_49	97139.C824_00742	53.1	0.000000482	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0196597_49	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
eggNOG-mapper	UHGV-0196597_50	1203606.HMPREF1526_00222	93.6	6.32e-22	N/A	N/A
Pfam	UHGV-0196597_51	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0196597_51	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0196597_52	phrog_27197	54.9	0.0000000000000016	N/A	unknown function
COG	UHGV-0196597_52	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A