UHGV-0196928 (vOTU-030305)

Viral Genome: UHGV-0196928

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0196928
vOTU ID	vOTU-030305
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN05414963_a1_ct10465_vs1@Siphoviridae__sp._ctVuY1
Associated BioSample	SAMN05414963
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.58 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.12
Jumbo phage	No

Genome content
Genome length (bp)	33,950
GC content	46.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	93%
Average CDS length (bps)	769.02
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0196928_4	phrog_34107	172.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0196928_4	411459.RUMOBE_01761	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0196928_5	411470.RUMGNA_00195	236.0	0	N/A	N/A
UniRef90	UHGV-0196928_6	UniRef90_R5G2D7	53.9	0.000000276	Putative long-chain-fatty-acid-CoA ligase	N/A
eggNOG-mapper	UHGV-0196928_6	411459.RUMOBE_01759	124.0	1.24e-35	N/A	N/A
PHROG	UHGV-0196928_7	phrog_2044	96.7	1.1e-28	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0196928_7	999413.HMPREF1094_00228	77.8	9.67e-18	N/A	N/A
structural_annotation	UHGV-0196928_7	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_8	phrog_1891	171.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196928_8	UniRef90_C4ZC58	295.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0196928_8	999413.HMPREF1094_00227	155.0	2.63444e-43	HNH endonuclease	N/A
Pfam	UHGV-0196928_8	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0196928_8	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_10	phrog_3584	279.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196928_10	UniRef90_A0A4P8IFK4	247.0	0	N/A	N/A
eggNOG-mapper	UHGV-0196928_10	411459.RUMOBE_01756	455.0	0	COG NOG14934 non supervised orthologous group	N/A
structural_annotation	UHGV-0196928_10	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_11	phrog_824	156.1	0	N/A	unknown function
UniRef90	UHGV-0196928_11	UniRef90_A0A412ELZ0	308.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0196928_11	411459.RUMOBE_01753	239.0	0	VRR-NUC domain	N/A
Pfam	UHGV-0196928_11	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0196928_12	PF12286,MF_00839,NF007780	N/A	N/A	N/A	N/A
KOfam	UHGV-0196928_13	K03496	177.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0196928_13	phrog_164	153.0	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196928_13	UniRef90_A0A412EMG9	481.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0196928_13	411459.RUMOBE_01750	417.0	0	CobQ CobB MinD ParA nucleotide binding domain protein	N/A
Pfam	UHGV-0196928_13	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0196928_13	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0196928_13	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0196928_14	K03497	54.5	1e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0196928_14	phrog_15982	597.4	0	N/A	unknown function
UniRef90	UHGV-0196928_14	UniRef90_A0A412ELY3	651.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0196928_14	411470.RUMGNA_00213	638.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0196928_14	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0196928_14	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0196928_14	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0196928_14	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_15	phrog_23707	76.3	3.9e-22	N/A	unknown function
UniRef90	UHGV-0196928_15	UniRef90_A0A1Q6KU34	405.0	0	N/A	N/A
eggNOG-mapper	UHGV-0196928_15	411470.RUMGNA_00214	379.0	0	N/A	N/A
Pfam	UHGV-0196928_15	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0196928_16	K03111	133.9	1.7e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0196928_16	phrog_44	136.7	1.4e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196928_16	UniRef90_A0A1C6E0P5	282.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0196928_16	411459.RUMOBE_01742	204.0	0	N/A	N/A
Pfam	UHGV-0196928_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0196928_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0196928_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0196928_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0196928_16	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_18	phrog_8684	68.1	1.8e-20	N/A	unknown function
UniRef90	UHGV-0196928_18	UniRef90_A0A1C6E0T1	486.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-0196928_18	1423816.BACQ01000027_gene952	82.8	4.79e-17	YopX protein	N/A
Pfam	UHGV-0196928_18	PF09643	N/A	N/A	YopX protein	YopX
Pfam	UHGV-0196928_18	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0196928_18	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_21	phrog_36	69.4	6e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0196928_21	UniRef90_UPI001D089637	155.0	0	N/A	N/A
eggNOG-mapper	UHGV-0196928_21	1304866.K413DRAFT_3028	157.0	0	N/A	N/A
structural_annotation	UHGV-0196928_21	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_22	phrog_119	73.1	3.3e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196928_22	UniRef90_A0A1C6DZR4	195.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0196928_22	86416.Clopa_0335	95.5	2.44e-24	HNH nucleases	N/A
Pfam	UHGV-0196928_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0196928_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0196928_22	PF05766,NF008448	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_24	phrog_9	259.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0196928_24	UniRef90_A0A1C6DZH3	1130.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0196928_24	1235798.C817_02581	603.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0196928_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0196928_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0196928_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0196928_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_25	phrog_12	140.2	1.10002e-41	portal protein	head and packaging
UniRef90	UHGV-0196928_25	UniRef90_A0A1C6E0D8	775.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0196928_25	86416.Clopa_0339	397.0	0	Phage portal protein	N/A
Pfam	UHGV-0196928_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0196928_25	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0196928_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0196928_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0196928_26	K01358	125.7	4.7e-37	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0196928_26	phrog_94	221.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0196928_26	UniRef90_A0A1C6DZF0	533.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0196928_26	1235792.C808_00085	244.0	0	Clp protease	N/A
Pfam	UHGV-0196928_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0196928_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0196928_26	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_27	phrog_10	108.8	4.9e-32	major head protein	head and packaging
UniRef90	UHGV-0196928_27	UniRef90_A0A1C6DZ71	771.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0196928_27	610130.Closa_0744	380.0	0	Phage capsid family	N/A
Pfam	UHGV-0196928_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0196928_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0196928_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0196928_27	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_28	phrog_749	74.9	7.9e-22	N/A	unknown function
UniRef90	UHGV-0196928_28	UniRef90_UPI001C0F1EE0	87.8	1.07e-20	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0196928_28	1347392.CCEZ01000045_gene14	79.0	5.44e-18	N/A	N/A
PHROG	UHGV-0196928_29	phrog_19734	75.8	4.9e-22	N/A	unknown function
UniRef90	UHGV-0196928_29	UniRef90_A0A0D8I708	76.6	8.09e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0196928_29	1211817.CCAT010000053_gene2134	67.8	0.000000000000287	N/A	N/A
Pfam	UHGV-0196928_29	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0196928_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_30	phrog_5	56.0	0.000000000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0196928_30	UniRef90_A0A1C6DYP9	256.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0196928_30	411459.RUMOBE_00932	118.0	1.56e-32	Phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0196928_30	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0196928_30	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0196928_30	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196928_31	1235792.C808_03059	72.0	0.000000000000337	phage major tail protein, phi13 family	N/A
COG	UHGV-0196928_31	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196928_31	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_32	phrog_88	108.5	5.4e-32	major tail protein	tail
UniRef90	UHGV-0196928_32	UniRef90_A0A1C6DYZ6	370.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0196928_32	1195236.CTER_5106	138.0	8.44e-39	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0196928_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0196928_32	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196928_32	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_33	phrog_2115	41.6	0.000000000021	tail protein	tail
structural_annotation	UHGV-0196928_33	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0196928_35	K20478	99.4	1.1e-31	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0196928_35	phrog_5218	303.7	0	N/A	unknown function
UniRef90	UHGV-0196928_35	UniRef90_A0A1C6DY47	2685.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0196928_35	908340.HMPREF9406_2570	291.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0196928_35	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0196928_35	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0196928_36	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_37	phrog_18110	225.6	0	N/A	unknown function
UniRef90	UHGV-0196928_37	UniRef90_A0A1C6DYP3	1103.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0196928_37	411459.RUMOBE_01723	157.0	2.13e-38	Phage minor structural protein	N/A
Pfam	UHGV-0196928_37	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0196928_37	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0196928_37	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0196928_38	phrog_16164	117.2	5.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-0196928_38	476272.RUMHYD_00002	85.1	0.0000000000000561	N/A	N/A
structural_annotation	UHGV-0196928_38	PF16640,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0196928_39	phrog_199	91.7	7.2e-27	holin	lysis
UniRef90	UHGV-0196928_39	UniRef90_A0A3D4RB03	268.0	0	Holin	N/A
eggNOG-mapper	UHGV-0196928_39	411459.RUMOBE_01714	209.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0196928_39	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0196928_39	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0196928_39	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0196928_39	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0196928_40	K01447	73.5	3.4e-21	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0196928_40	phrog_1794	124.7	8.9e-37	amidase	lysis
UniRef90	UHGV-0196928_40	UniRef90_A0A1C6J4E5	578.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0196928_40	397290.C810_00440	163.0	6.72623e-44	Ami_2	N/A
Pfam	UHGV-0196928_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0196928_40	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0196928_40	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0196928_41	K06168	549.3	0	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	N/A
UniRef90	UHGV-0196928_41	UniRef90_A0A1C6DWW6	833.0	0	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	N/A
eggNOG-mapper	UHGV-0196928_41	180332.JTGN01000007_gene3805	677.0	0	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
Pfam	UHGV-0196928_41	PF00919	N/A	N/A	N/A	UPF0004
Pfam	UHGV-0196928_41	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
NCBIFam	UHGV-0196928_41	TIGR01574.1	N/A	N/A	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	N/A
COG	UHGV-0196928_41	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
HAMAP	UHGV-0196928_41	MF_01864	N/A	N/A	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	N/A
structural_annotation	UHGV-0196928_41	PF00919,PF20903,MF_01864,TIGR01574,COG0621	N/A	N/A	N/A	N/A