UHGV-0197748 (vOTU-005392)

Viral Genome: UHGV-0197748

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0197748
vOTU ID	vOTU-005392
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781725_a1_ct8878@circular@Siphoviridae__sp._ctJl4878
Associated BioSample	SAMN09781725
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9805
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.39
Jumbo phage	No

Genome content
Genome length (bp)	44,986
GC content	40.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	90%
Average CDS length (bps)	586.96
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0197748_1	K06400	293.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0197748_1	phrog_95	327.1	0	integrase	integration and excision
UniRef90	UHGV-0197748_1	UniRef90_A0A2V2D7K6	1007.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0197748_1	33035.JPJF01000109_gene439	672.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0197748_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0197748_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0197748_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0197748_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0197748_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_2	phrog_38078	50.8	0.000000000000001	N/A	unknown function
UniRef90	UHGV-0197748_2	UniRef90_UPI0009315CF1	464.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0197748_2	476272.RUMHYD_03304	220.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0197748_2	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0197748_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0197748_2	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0197748_2	PF08239,PF09953,NF040678,COG3942,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_3	phrog_16313	72.9	2e-22	virion structural protein	head and packaging
PHROG	UHGV-0197748_5	phrog_6616	526.8	0	tail protein	tail
UniRef90	UHGV-0197748_5	UniRef90_A0A2V2D052	1347.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0197748_5	1121866.AUGK01000003_gene1439	257.0	0	Phage minor structural protein	N/A
COG	UHGV-0197748_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0197748_5	PF05954,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0197748_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_7	phrog_1535	485.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0197748_7	UniRef90_A0A173R880	484.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0197748_7	476272.RUMHYD_01785	476.0	0	phage tail tape measure protein	N/A
COG	UHGV-0197748_7	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0197748_7	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_8	phrog_706	135.1	4.39999e-40	N/A	unknown function
UniRef90	UHGV-0197748_8	UniRef90_UPI001BAD00AD	215.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0197748_8	411459.RUMOBE_01383	353.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0197748_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0197748_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_9	phrog_11299	70.1	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0197748_9	33035.JPJF01000106_gene3125	62.0	0.000000000295	N/A	N/A
structural_annotation	UHGV-0197748_9	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_10	phrog_3099	131.0	7.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0197748_10	411902.CLOBOL_00129	168.0	0	N/A	N/A
structural_annotation	UHGV-0197748_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_11	phrog_3266	90.0	2e-26	tail completion	connector
eggNOG-mapper	UHGV-0197748_11	476272.RUMHYD_01781	150.0	4.48416e-44	N/A	N/A
structural_annotation	UHGV-0197748_11	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_12	phrog_3366	97.6	1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0197748_12	476272.RUMHYD_01779	163.0	0	N/A	N/A
structural_annotation	UHGV-0197748_12	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_13	phrog_18218	128.7	1.8e-38	N/A	unknown function
UniRef90	UHGV-0197748_13	UniRef90_A0A8D9PGR5	139.0	1.19e-40	Holin	N/A
eggNOG-mapper	UHGV-0197748_13	411902.CLOBOL_03424	85.1	5.9e-20	N/A	N/A
structural_annotation	UHGV-0197748_13	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_14	phrog_541	80.5	1.4e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0197748_14	476272.RUMHYD_01778	106.0	2.88e-26	N/A	N/A
PHROG	UHGV-0197748_15	phrog_544	162.0	0	major head protein	head and packaging
UniRef90	UHGV-0197748_15	UniRef90_A0A395X7A1	667.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0197748_15	1232453.BAIF02000011_gene3359	390.0	0	N/A	N/A
Pfam	UHGV-0197748_15	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0197748_15	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_16	phrog_194	62.9	6.1e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0197748_16	UniRef90_UPI001D14C9C8	196.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0197748_16	476272.RUMHYD_01775	197.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0197748_16	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0197748_17	phrog_28802	188.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0197748_17	476272.RUMHYD_01772	158.0	0	N/A	N/A
PHROG	UHGV-0197748_18	phrog_20016	204.5	0	N/A	unknown function
UniRef90	UHGV-0197748_18	UniRef90_A0A285PT46	168.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0197748_18	397290.C810_05214	185.0	0	N/A	N/A
structural_annotation	UHGV-0197748_18	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_19	phrog_16490	189.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0197748_19	397290.C810_01328	191.0	0	N/A	N/A
PHROG	UHGV-0197748_20	phrog_22984	94.9	4.4e-28	N/A	unknown function
PHROG	UHGV-0197748_21	phrog_21718	127.7	5.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-0197748_21	397290.C810_05210	119.0	5.55e-32	N/A	N/A
PHROG	UHGV-0197748_22	phrog_31631	68.1	7.8e-20	N/A	unknown function
structural_annotation	UHGV-0197748_23	PF15777,PF14120	N/A	N/A	N/A	N/A
UniRef90	UHGV-0197748_24	UniRef90_A0A843HPX3	50.8	0.000000652	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0197748_24	1235790.C805_00057	63.5	0.00000000000107	N/A	N/A
structural_annotation	UHGV-0197748_24	PF13404,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0197748_25	UniRef90_A0A395X7A4	177.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0197748_25	476272.RUMHYD_01766	125.0	3.21e-36	N/A	N/A
PHROG	UHGV-0197748_26	phrog_3754	118.5	3.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-0197748_26	476272.RUMHYD_01764	179.0	0	N/A	N/A
PHROG	UHGV-0197748_27	phrog_581	240.6	0	minor head protein	head and packaging
UniRef90	UHGV-0197748_27	UniRef90_UPI001C0EDE82	610.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0197748_27	642492.Clole_0816	175.0	0	N/A	N/A
Pfam	UHGV-0197748_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0197748_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0197748_27	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_28	phrog_556	73.5	1.9e-21	minor head protein	head and packaging
UniRef90	UHGV-0197748_28	UniRef90_UPI001C0ECC47	215.0	0	minor capsid protein	N/A
Pfam	UHGV-0197748_28	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0197748_28	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_29	phrog_533	271.0	0	portal protein	head and packaging
UniRef90	UHGV-0197748_29	UniRef90_A0A1C6CDM8	650.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0197748_29	33035.JPJF01000106_gene3135	484.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0197748_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0197748_31	K06909	415.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0197748_31	phrog_3717	167.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0197748_31	UniRef90_UPI001C0ECFC2	798.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0197748_31	33035.JPJF01000106_gene3136	656.0	0	Terminase small subunit	N/A
Pfam	UHGV-0197748_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0197748_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0197748_31	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0197748_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0197748_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0197748_31	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0197748_32	411459.RUMOBE_01385	50.4	0.00000105	N/A	N/A
AcrCatalog	UHGV-0197748_32	cluster_11670	78.6	4.31e-22	NA	N/A
eggNOG-mapper	UHGV-0197748_34	1235799.C818_02666	77.4	0.00000000000000664	N/A	N/A
structural_annotation	UHGV-0197748_34	PF11302	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_37	phrog_22740	71.7	8.8e-21	N/A	unknown function
UniRef90	UHGV-0197748_37	UniRef90_A0A174XE96	102.0	7.24e-26	DNA N-6-adenine-methyltransferase of bacteriophage	N/A
eggNOG-mapper	UHGV-0197748_37	411468.CLOSCI_00567	97.1	1.1e-23	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0197748_37	oMTase_00015	75.7	1.1e-21	orphan methyltransferase	RM
Pfam	UHGV-0197748_37	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
eggNOG-mapper	UHGV-0197748_38	476272.RUMHYD_01751	48.9	0.0000044	N/A	N/A
AcrCatalog	UHGV-0197748_38	cluster_11670	43.9	0.0000000152	NA	N/A
eggNOG-mapper	UHGV-0197748_42	665950.HMPREF1025_01402	86.3	6.26e-22	N/A	N/A
UniRef90	UHGV-0197748_43	UniRef90_UPI001898116D	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0197748_43	1256908.HMPREF0373_00667	102.0	8.42e-27	N/A	N/A
Pfam	UHGV-0197748_43	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0197748_48	phrog_954	198.6	0	DNA methyltransferase	other
UniRef90	UHGV-0197748_48	UniRef90_UPI001898E47B	268.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0197748_48	1395513.P343_12775	199.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-0197748_48	MTase_II_00074	183.9	0	Type II methyltransferase	RM
COG	UHGV-0197748_48	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0197748_48	PF05148,MF_01057,NF011527,COG4123	N/A	N/A	N/A	N/A
UniRef90	UHGV-0197748_49	UniRef90_A0A373P4I4	62.8	0.0000000000413	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0197748_49	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_50	phrog_17690	136.1	9.99995e-41	N/A	unknown function
eggNOG-mapper	UHGV-0197748_50	476272.RUMHYD_03925	196.0	0	N/A	N/A
PHROG	UHGV-0197748_52	phrog_8841	538.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197748_52	UniRef90_A0A7U9JR13	711.0	0	DNA/RNA helicase, superfamily II	N/A
eggNOG-mapper	UHGV-0197748_52	1304866.K413DRAFT_0823	711.0	0	N/A	N/A
Pfam	UHGV-0197748_52	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0197748_52	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0197748_52	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0197748_52	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0197748_53	K02316	67.5	2e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0197748_53	phrog_11992	155.7	0	N/A	unknown function
UniRef90	UHGV-0197748_53	UniRef90_A0A395X7I4	280.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0197748_53	476272.RUMHYD_01741	191.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0197748_53	drt-UG29	56.5	2.9e-16	DRT	DRT
Pfam	UHGV-0197748_53	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0197748_53	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0197748_53	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_54	phrog_3490	144.9	3.69943e-43	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197748_54	UniRef90_A0A395XB48	320.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0197748_54	357809.Cphy_2986	215.0	0	N/A	N/A
Pfam	UHGV-0197748_54	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0197748_54	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0197748_55	K03111	139.9	2.59997e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0197748_55	phrog_44	147.5	6.72623e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197748_55	UniRef90_A0A412ELG8	254.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0197748_55	658655.HMPREF0988_02584	187.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0197748_55	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0197748_55	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0197748_55	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0197748_55	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0197748_55	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_56	phrog_7838	143.1	1.90016e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0197748_56	UniRef90_A0A8D9UGW3	184.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0197748_56	742767.HMPREF9456_02052	186.0	0	N/A	N/A
structural_annotation	UHGV-0197748_56	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0197748_57	UniRef90_R6RDX0	81.3	6.4e-19	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-0197748_58	NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_63	phrog_5070	196.7	0	N/A	unknown function
UniRef90	UHGV-0197748_63	UniRef90_A0A285PUH1	134.0	1.63e-35	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-0197748_63	411470.RUMGNA_02189	111.0	1.12e-27	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0197748_63	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0197748_63	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0197748_63	NF040481	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0197748_65	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-0197748_66	K18830	65.0	6.9e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0197748_66	phrog_8	53.6	0.0000000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-0197748_66	UniRef90_A0A6L8T004	238.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0197748_66	748224.HMPREF9436_01444	118.0	2.06e-32	N/A	N/A
PADLOC	UHGV-0197748_66	retron_type_VI_hth_cluster2_1	40.1	0.000000000088	N/A	Retron
Pfam	UHGV-0197748_66	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0197748_66	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0197748_66	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0197748_69	phrog_215	46.1	0.00000000000057	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-0197748_69	180332.JTGN01000005_gene2952	107.0	1.3e-21	domain, Protein	N/A
Pfam	UHGV-0197748_69	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0197748_69	COG2382	N/A	N/A	Enterochelin esterase or related enzyme	N/A