UHGV-0198331 (vOTU-020123)

Viral Genome: UHGV-0198331

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0198331
vOTU ID	vOTU-020123
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN03283291_a1_ct56092_vs1@Siphoviridae__sp._ctP5u1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.08 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9827
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.08
Jumbo phage	No

Genome content
Genome length (bp)	25,946
GC content	53.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	92%
Average CDS length (bps)	521.02
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0198331_2	phrog_33	41.4	0.00000000002	distal tail protein Dit	tail
UniRef90	UHGV-0198331_2	UniRef90_UPI000E5CE8E9	127.0	3.94e-33	phage tail family protein	N/A
eggNOG-mapper	UHGV-0198331_2	877414.ATWA01000019_gene2049	100.0	1.92e-23	N/A	N/A
structural_annotation	UHGV-0198331_2	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_3	phrog_6900	272.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0198331_3	1499683.CCFF01000017_gene2565	314.0	0	tape measure	N/A
COG	UHGV-0198331_3	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198331_3	MF_04138,COG5281	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198331_4	UniRef90_A0A285PXU7	64.3	0.000000000144	Consensus disorder prediction	N/A
PHROG	UHGV-0198331_5	phrog_885	78.5	7.1e-23	major tail protein	tail
UniRef90	UHGV-0198331_5	UniRef90_A0A843J9F0	213.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0198331_5	1504822.CCNO01000012_gene492	248.0	0	N/A	N/A
structural_annotation	UHGV-0198331_5	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_6	phrog_17405	46.2	0.00000000000068	head protein	head and packaging
UniRef90	UHGV-0198331_6	UniRef90_A0A415JI88	116.0	3.78e-31	N/A	N/A
structural_annotation	UHGV-0198331_6	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_7	phrog_17977	73.6	1.9e-21	N/A	unknown function
UniRef90	UHGV-0198331_7	UniRef90_UPI00141211AB	92.0	9.86e-22	head-tail adaptor protein	N/A
structural_annotation	UHGV-0198331_7	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_9	phrog_267	194.1	0	major head protein	head and packaging
UniRef90	UHGV-0198331_9	UniRef90_A0A417IN35	257.0	0	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-0198331_9	1504823.CCMM01000008_gene1041	254.0	0	P22 coat protein-protein 5 domain protein	N/A
Pfam	UHGV-0198331_9	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
structural_annotation	UHGV-0198331_9	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198331_10	UniRef90_B6CXE3	58.9	0.000000267	Fibronectin autolysin	N/A
structural_annotation	UHGV-0198331_10	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_11	phrog_1233	85.4	6.6e-25	N/A	unknown function
UniRef90	UHGV-0198331_11	UniRef90_UPI001C39EFB9	107.0	9.75e-28	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0198331_11	357809.Cphy_2967	134.0	6.27e-39	N/A	N/A
structural_annotation	UHGV-0198331_12	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_13	phrog_5	69.5	5.4e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-0198331_13	UniRef90_A0A4D7AJK9	196.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0198331_13	1280685.AUKC01000004_gene1630	105.0	1.23e-26	N/A	N/A
Pfam	UHGV-0198331_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0198331_13	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_14	phrog_115	113.3	1.4e-33	minor head protein	head and packaging
UniRef90	UHGV-0198331_14	UniRef90_A0A810PSD3	605.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0198331_14	1111121.HMPREF1247_0797	189.0	0	cell adhesion	N/A
Pfam	UHGV-0198331_14	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0198331_14	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0198331_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198331_14	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_15	phrog_64	156.1	0	portal protein	head and packaging
UniRef90	UHGV-0198331_15	UniRef90_UPI0018A8A301	595.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0198331_15	1235800.C819_02239	90.1	1.64e-16	phage portal protein, SPP1	N/A
Pfam	UHGV-0198331_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0198331_15	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0198331_16	K06909	131.1	1.1e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0198331_16	phrog_10250	183.0	0	N/A	unknown function
UniRef90	UHGV-0198331_16	UniRef90_A0A3D3Y0N9	704.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0198331_16	1226322.HMPREF1545_00043	594.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0198331_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0198331_16	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0198331_16	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0198331_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0198331_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_17	phrog_419	101.2	1.2e-29	N/A	unknown function
UniRef90	UHGV-0198331_17	UniRef90_A6MAI4	154.0	0	Gp119	N/A
eggNOG-mapper	UHGV-0198331_17	388452.A6MAI4_9CAUD	154.0	0	N/A	N/A
structural_annotation	UHGV-0198331_17	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-0198331_19	K07319	121.4	8e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0198331_19	phrog_498	440.2	0	DNA methyltransferase	other
UniRef90	UHGV-0198331_19	UniRef90_A0A810Q3Z7	440.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0198331_19	1423758.BN55_01455	422.0	0	DNA methylase	N/A
PADLOC	UHGV-0198331_19	MTase_II_00015	230.5	0	Type II methyltransferase	RM
Pfam	UHGV-0198331_19	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0198331_19	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0198331_19	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0198331_19	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_21	phrog_22543	44.4	0.0000000000028	N/A	unknown function
UniRef90	UHGV-0198331_21	UniRef90_A0A8D9PDK2	65.1	0.0000000000154	Zinc-ribbon containing domain	N/A
UniRef90	UHGV-0198331_22	UniRef90_A0A8D9PDQ6	144.0	5.32493e-44	Restriction alleviation protein	N/A
Pfam	UHGV-0198331_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0198331_22	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_23	phrog_8684	69.5	5.7e-22	N/A	unknown function
UniRef90	UHGV-0198331_23	UniRef90_A0A373CDP9	129.0	1.69e-35	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0198331_23	1226322.HMPREF1545_00036	67.0	0.0000000000039	YopX protein	N/A
Pfam	UHGV-0198331_23	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0198331_23	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0198331_23	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_24	phrog_38832	81.2	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0198331_24	665956.HMPREF1032_00143	81.6	4.48e-17	N/A	N/A
structural_annotation	UHGV-0198331_24	PF10781	N/A	N/A	N/A	N/A
KOfam	UHGV-0198331_26	K00558	42.0	1.2e-20	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0198331_26	phrog_16427	81.4	1.2e-23	DNA methyltransferase	other
UniRef90	UHGV-0198331_26	UniRef90_D4KCC8	177.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0198331_26	657322.FPR_26610	199.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0198331_26	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0198331_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0198331_28	phrog_190	110.5	1.2e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198331_28	UniRef90_A0A8D9PDD6	257.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0198331_28	1226322.HMPREF1545_00295	115.0	1.03e-30	N/A	N/A
Pfam	UHGV-0198331_28	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0198331_28	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0198331_30	K02315	119.5	3.7e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0198331_30	phrog_50	121.3	9.4e-36	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198331_30	UniRef90_A0A810Q3X8	298.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0198331_30	445972.ANACOL_01829	184.0	0	N/A	N/A
Pfam	UHGV-0198331_30	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0198331_30	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0198331_30	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_31	phrog_15768	97.9	1.8e-29	N/A	unknown function
UniRef90	UHGV-0198331_31	UniRef90_A0A416HMA1	115.0	2.97e-28	N/A	N/A
eggNOG-mapper	UHGV-0198331_31	445970.ALIPUT_02689	85.1	2.96e-17	DNA-binding transcription factor activity	N/A
Pfam	UHGV-0198331_31	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0198331_31	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0198331_31	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0198331_33	K03111	142.7	3.80032e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0198331_33	phrog_44	138.3	4.39994e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198331_33	UniRef90_A0A350TKS2	191.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0198331_33	1226322.HMPREF1545_04080	186.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0198331_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0198331_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0198331_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0198331_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0198331_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_34	phrog_7566	99.0	2.5e-29	N/A	unknown function
UniRef90	UHGV-0198331_34	UniRef90_A0A8D9UHC0	168.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0198331_34	693746.OBV_24070	119.0	9.01e-34	N/A	N/A
PHROG	UHGV-0198331_35	phrog_72	46.3	0.00000000000032	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198331_35	UniRef90_A0A8D9PDS2	268.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0198331_35	445972.ANACOL_01825	127.0	3.22e-35	N/A	N/A
structural_annotation	UHGV-0198331_35	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_36	phrog_155	156.6	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198331_36	UniRef90_UPI00130EB09C	200.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0198331_36	748224.HMPREF9436_03360	182.0	0	ERF superfamily	N/A
Pfam	UHGV-0198331_36	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0198331_36	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_37	phrog_253	88.0	1.1e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198331_37	UniRef90_A0A8D9PDS3	213.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0198331_37	748224.HMPREF9436_03356	104.0	3.68e-26	Siphovirus Gp157	N/A
Pfam	UHGV-0198331_37	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0198331_37	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_41	phrog_8	50.1	0.000000000000059	transcriptional regulator	transcription regulation
UniRef90	UHGV-0198331_41	UniRef90_A0A2Z4UCW0	75.5	9.71e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0198331_41	1121871.AUAT01000002_gene1384	55.5	0.00000000401	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0198331_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0198331_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0198331_41	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0198331_42	phrog_8	55.7	0.0000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0198331_42	UniRef90_A0A842AGN1	73.2	0.000000000000018	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0198331_42	903814.ELI_4515	65.1	0.00000000000643	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0198331_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0198331_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0198331_42	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198331_45	UniRef90_A0A810PZB1	71.6	0.00000000000102	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0198331_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0198331_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0198331_45	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0198331_46	K06400	264.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0198331_46	phrog_95	288.4	0	integrase	integration and excision
UniRef90	UHGV-0198331_46	UniRef90_A0A3A9I9T1	366.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0198331_46	357809.Cphy_2997	293.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0198331_46	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0198331_46	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0198331_46	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0198331_46	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A