UHGV-0198485 (vOTU-006734)

Viral Genome: UHGV-0198485

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0198485
vOTU ID	vOTU-006734
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781727_a1_ct4417@circular@Myoviridae__sp._ctBUk417
Associated BioSample	SAMN09781727
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.16
Jumbo phage	No

Genome content
Genome length (bp)	43,134
GC content	54.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	91%
Average CDS length (bps)	505.85
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0198485_1	UniRef90_A0A1Q9JGI6	115.0	2.02e-30	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0198485_1	1118055.CAGU01000028_gene99	110.0	4.69e-29	N/A	N/A
structural_annotation	UHGV-0198485_1	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_4	phrog_3754	96.1	3.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0198485_4	1235790.C805_00054	111.0	4.56e-30	N/A	N/A
PHROG	UHGV-0198485_5	phrog_21718	87.8	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0198485_5	397290.C810_05210	79.7	1.14e-16	N/A	N/A
PHROG	UHGV-0198485_6	phrog_22984	70.3	2.6e-20	N/A	unknown function
PHROG	UHGV-0198485_7	phrog_16490	195.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0198485_7	397290.C810_01328	126.0	1.48e-31	N/A	N/A
PHROG	UHGV-0198485_8	phrog_20016	204.8	0	N/A	unknown function
UniRef90	UHGV-0198485_8	UniRef90_A0A285PT46	214.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0198485_8	1226322.HMPREF1545_00077	185.0	0	N/A	N/A
structural_annotation	UHGV-0198485_8	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198485_9	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0198485_11	K14059	147.7	1.30321e-43	int; integrase	N/A
PHROG	UHGV-0198485_11	phrog_1	185.0	0	integrase	integration and excision
UniRef90	UHGV-0198485_11	UniRef90_A0A174D176	524.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0198485_11	411471.SUBVAR_05137	258.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0198485_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0198485_11	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0198485_11	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198485_12	UniRef90_A0A6N7TLT0	335.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0198485_12	266265.Bxe_A3948	51.6	0.00000183	Helix-turn-helix domain	N/A
Pfam	UHGV-0198485_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0198485_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0198485_12	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198485_15	UniRef90_A0A1W2B3I7	88.6	1.6e-19	Ig-like domain (Group 2)	N/A
eggNOG-mapper	UHGV-0198485_15	321955.AAGP01000017_gene2211	54.3	0.0000000803	N/A	N/A
structural_annotation	UHGV-0198485_19	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_20	phrog_8	45.8	0.0000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0198485_20	UniRef90_A0A1V0QCF9	82.0	7.81e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0198485_20	1226322.HMPREF1545_00148	75.9	4.16e-16	Transcriptional	N/A
Pfam	UHGV-0198485_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0198485_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0198485_20	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198485_21	UniRef90_A0A1C7FQD9	79.3	5.21e-18	Transcriptional regulator	N/A
structural_annotation	UHGV-0198485_21	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0198485_24	K07741	93.2	7.3e-27	antB; anti-repressor protein	N/A
PHROG	UHGV-0198485_24	phrog_63	186.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0198485_24	UniRef90_A0A844D5R9	373.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0198485_24	941770.GL622178_gene366	239.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0198485_24	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0198485_24	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0198485_24	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0198485_24	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0198485_24	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0198485_25	760568.Desku_0919	95.9	1.02e-21	N/A	N/A
structural_annotation	UHGV-0198485_25	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_27	phrog_4433	169.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0198485_27	665950.HMPREF1025_01373	97.4	1.12e-20	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0198485_27	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0198485_27	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198485_29	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198485_30	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198485_31	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198485_33	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_34	phrog_674	147.2	1.20512e-43	N/A	unknown function
UniRef90	UHGV-0198485_34	UniRef90_A0A3A6E846	484.0	0	N/A	N/A
eggNOG-mapper	UHGV-0198485_34	1121441.AUCX01000014_gene537	90.5	4.9e-18	N/A	N/A
Pfam	UHGV-0198485_34	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0198485_34	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_35	phrog_2760	178.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198485_35	UniRef90_A0A3A6EAW6	477.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0198485_35	1235794.C811_01355	147.0	1.54e-39	RecT family	N/A
Pfam	UHGV-0198485_35	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0198485_35	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0198485_35	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0198485_35	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0198485_36	K03111	43.0	0.0000000000096	ssb; single-strand DNA-binding protein	N/A
UniRef90	UHGV-0198485_36	UniRef90_UPI001CBB85F6	104.0	6.58e-25	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0198485_36	1150599.MPHLEI_23354	55.8	0.000000227	Single-stranded DNA-binding protein	N/A
COG	UHGV-0198485_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0198485_36	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_37	phrog_186	74.2	2.1e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198485_37	UniRef90_UPI001C02E649	362.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0198485_37	718252.FP2_01000	168.0	0	N/A	N/A
Pfam	UHGV-0198485_37	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0198485_37	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0198485_37	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0198485_37	PF09681,MF_01819,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0198485_42	K01160	59.0	1.4e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0198485_42	phrog_34	61.4	1.8e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198485_42	UniRef90_A0A6N7TND6	220.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0198485_42	875454.BAEW01000002_gene491	136.0	6.31e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0198485_42	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0198485_42	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0198485_42	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198485_44	UniRef90_A0A6N7TNN9	68.9	0.00000000000897	N/A	N/A
structural_annotation	UHGV-0198485_44	PF07374	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198485_45	UniRef90_UPI0018CC2891	117.0	1.04e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0198485_45	1235790.C805_00037	110.0	1.47e-28	N/A	N/A
structural_annotation	UHGV-0198485_45	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0198485_46	K06909	141.6	7.29936e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0198485_46	phrog_10250	175.6	0	N/A	unknown function
UniRef90	UHGV-0198485_46	UniRef90_A0A844D8I4	828.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0198485_46	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0198485_46	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0198485_46	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0198485_46	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0198485_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0198485_46	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_47	phrog_64	112.8	1.3e-33	portal protein	head and packaging
UniRef90	UHGV-0198485_47	UniRef90_A0A6N7TNT3	870.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0198485_47	1042156.CXIVA_01850	81.6	0.0000000000000992	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0198485_47	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0198485_47	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_49	phrog_2468	80.3	1.8e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0198485_49	UniRef90_A0A6N7TLR7	610.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0198485_49	1504822.CCNO01000013_gene286	114.0	2.82e-25	cell adhesion	N/A
Pfam	UHGV-0198485_49	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0198485_49	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198485_49	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_51	phrog_8680	203.1	0	N/A	unknown function
UniRef90	UHGV-0198485_51	UniRef90_A0A6N7TNE8	451.0	0	N/A	N/A
eggNOG-mapper	UHGV-0198485_51	411470.RUMGNA_02208	190.0	0	N/A	N/A
Pfam	UHGV-0198485_51	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0198485_51	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_53	phrog_5	48.4	0.00000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-0198485_53	UniRef90_A0A6N7TNP6	287.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0198485_53	1123309.AQYB01000018_gene814	91.7	1.12e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0198485_53	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0198485_53	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0198485_53	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_55	phrog_478	125.0	3.1e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0198485_55	UniRef90_A0A373Q857	165.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0198485_55	1111121.HMPREF1247_0834	98.6	9.79e-25	N/A	N/A
PHROG	UHGV-0198485_57	phrog_544	154.1	1.4013e-45	major head protein	head and packaging
UniRef90	UHGV-0198485_57	UniRef90_R0BKA1	457.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0198485_57	476272.RUMHYD_01776	340.0	0	N/A	N/A
structural_annotation	UHGV-0198485_57	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_59	phrog_17977	43.9	0.0000000000033	N/A	unknown function
UniRef90	UHGV-0198485_59	UniRef90_A0A844DHJ8	122.0	9.92e-34	Phage head closure protein	N/A
structural_annotation	UHGV-0198485_59	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198485_60	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_61	phrog_885	63.7	2.3e-18	major tail protein	tail
eggNOG-mapper	UHGV-0198485_61	1111121.HMPREF1247_0789	152.0	2.8026e-44	N/A	N/A
structural_annotation	UHGV-0198485_61	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_64	phrog_9959	96.7	1.4e-28	tail length tape measure protein	tail
UniRef90	UHGV-0198485_64	UniRef90_A0A844DDD5	565.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0198485_64	663278.Ethha_0487	160.0	5.3e-37	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0198485_64	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0198485_64	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0198485_64	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0198485_64	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_65	phrog_3558	269.6	0	tail protein	tail
UniRef90	UHGV-0198485_65	UniRef90_UPI001C01D15B	849.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0198485_65	411465.PEPMIC_00746	127.0	4.69e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-0198485_65	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0198485_65	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0198485_65	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0198485_65	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198485_68	UniRef90_A0A412ZBV2	76.3	0.000000000000112	MtfA protein	N/A
eggNOG-mapper	UHGV-0198485_68	1120933.ATUY01000004_gene1010	68.6	0.0000000000159	N/A	N/A
structural_annotation	UHGV-0198485_68	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0198485_69	657322.FPR_13530	73.2	0.0000000000536	domain, Protein	N/A
COG	UHGV-0198485_69	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_71	phrog_28526	109.3	1.3e-32	N/A	unknown function
UniRef90	UHGV-0198485_71	UniRef90_A0A415D4T1	77.4	7.24e-18	N/A	N/A
eggNOG-mapper	UHGV-0198485_71	748224.HMPREF9436_00155	86.7	2.57e-22	N/A	N/A
Pfam	UHGV-0198485_71	PF04255	N/A	N/A	N/A	DUF433
KOfam	UHGV-0198485_72	K07273	170.4	0	acm; lysozyme	N/A
PHROG	UHGV-0198485_72	phrog_291	118.2	8e-35	endolysin	lysis
UniRef90	UHGV-0198485_72	UniRef90_A0A564U0D3	427.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0198485_72	718252.FP2_04890	255.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0198485_72	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0198485_72	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0198485_72	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_74	phrog_15303	78.1	9.4e-23	N/A	unknown function
structural_annotation	UHGV-0198485_75	PF07870,MF_01506	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198485_77	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0198485_78	phrog_5765	61.0	1.3e-17	N/A	unknown function
UniRef90	UHGV-0198485_78	UniRef90_UPI001D0EF465	65.9	0.000000000000314	BC1881 family protein	N/A
eggNOG-mapper	UHGV-0198485_78	748727.CLJU_c31430	58.5	0.0000000000296	N/A	N/A
NCBIFam	UHGV-0198485_78	NF033495.1	N/A	N/A	BC1881 family protein	N/A