UHGV-0198823 (vOTU-047426)

Viral Genome: UHGV-0198823

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0198823
vOTU ID	vOTU-047426
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN00791989_a1_ct16204@circular@Siphoviridae__sp._ctWK9204
Associated BioSample	SAMN00791989
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.2
Jumbo phage	No

Genome content
Genome length (bp)	40,274
GC content	51.78%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	92%
Average CDS length (bps)	568.52
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0198823_1	K07273	173.2	0	acm; lysozyme	N/A
PHROG	UHGV-0198823_1	phrog_291	133.6	1.6e-39	endolysin	lysis
UniRef90	UHGV-0198823_1	UniRef90_UPI001D0EE7D8	306.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0198823_1	748224.HMPREF9436_00154	284.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0198823_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0198823_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0198823_1	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_2	phrog_1863	73.4	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0198823_2	718252.FP2_04900	139.0	4.13944e-42	N/A	N/A
PHROG	UHGV-0198823_3	phrog_15303	81.9	5.4e-24	N/A	unknown function
UniRef90	UHGV-0198823_7	UniRef90_A0A1Y3R5J8	48.5	0.00000374	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0198823_7	1160721.RBI_I00206	55.8	0.000000000843	N/A	N/A
structural_annotation	UHGV-0198823_7	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_9	phrog_22984	54.4	0.0000000000000017	N/A	unknown function
PHROG	UHGV-0198823_10	phrog_16490	54.1	0.0000000000000032	N/A	unknown function
structural_annotation	UHGV-0198823_11	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0198823_12	1408437.JNJN01000043_gene801	95.5	3.59e-22	N/A	N/A
KOfam	UHGV-0198823_13	K14059	179.1	0	int; integrase	N/A
PHROG	UHGV-0198823_13	phrog_1	162.8	0	integrase	integration and excision
UniRef90	UHGV-0198823_13	UniRef90_A0A367GI93	219.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0198823_13	1507.HMPREF0262_00307	155.0	7.53997e-41	Phage integrase family	N/A
Pfam	UHGV-0198823_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0198823_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0198823_13	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0198823_14	K07729	40.2	0.000000000036	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0198823_14	UniRef90_A0A2A7B6N3	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0198823_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0198823_14	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0198823_17	2754.EH55_07110	95.9	6.54e-20	N/A	N/A
structural_annotation	UHGV-0198823_17	COG5342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198823_21	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198823_22	UniRef90_A0A2A7AM72	184.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0198823_22	1378168.N510_01712	64.3	0.0000000000791	N/A	N/A
structural_annotation	UHGV-0198823_22	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198823_23	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_31	phrog_14970	41.9	0.000000000016	N/A	unknown function
COG	UHGV-0198823_31	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0198823_31	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_32	phrog_72	47.0	0.0000000000004	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0198823_32	411471.SUBVAR_05829	139.0	3.07e-39	N/A	N/A
structural_annotation	UHGV-0198823_32	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_35	phrog_7566	85.1	4.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0198823_35	411471.SUBVAR_05830	105.0	8.9e-28	N/A	N/A
KOfam	UHGV-0198823_36	K03111	143.3	2.29953e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0198823_36	phrog_44	147.9	4.48416e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198823_36	UniRef90_A0A844DI52	222.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0198823_36	718252.FP2_06770	218.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0198823_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0198823_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0198823_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0198823_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0198823_36	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_37	phrog_6969	60.0	3.8e-17	N/A	unknown function
UniRef90	UHGV-0198823_37	UniRef90_A0A843HT15	78.2	9.42e-16	Winged helix DNA-binding protein	N/A
eggNOG-mapper	UHGV-0198823_37	1232446.BAIE02000002_gene816	79.3	5.35e-16	N/A	N/A
Pfam	UHGV-0198823_37	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0198823_37	PF05584,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198823_38	UniRef90_UPI001CBE86CE	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0198823_38	748224.HMPREF9436_00735	155.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0198823_38	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0198823_38	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0198823_39	K03496	206.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0198823_39	phrog_164	154.1	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198823_39	UniRef90_A0A2A7B6H3	360.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0198823_39	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-0198823_39	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0198823_39	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0198823_39	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198823_40	UniRef90_A0A355JDC2	93.6	4.25e-21	N/A	N/A
KOfam	UHGV-0198823_41	K03497	88.8	9.9e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0198823_41	phrog_4715	112.2	2.7e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198823_41	UniRef90_A0A2A7B6Q0	254.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0198823_41	411471.SUBVAR_05842	178.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0198823_41	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0198823_41	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0198823_41	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198823_42	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_49	phrog_119	56.1	4.9e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198823_49	UniRef90_A0A2A7B6I3	226.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0198823_49	610130.Closa_0739	106.0	3.62e-28	HNH nucleases	N/A
Pfam	UHGV-0198823_49	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0198823_49	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0198823_50	phrog_13845	54.4	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0198823_50	1399942.U3PDR2_9CAUD	65.9	0.00000000000319	N/A	N/A
structural_annotation	UHGV-0198823_50	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_51	phrog_9	241.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0198823_51	UniRef90_A0A2A7ALT4	1054.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0198823_51	610130.Closa_0741	631.0	0	Phage Terminase	N/A
Pfam	UHGV-0198823_51	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0198823_51	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0198823_51	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_52	phrog_12	127.5	8.8e-38	portal protein	head and packaging
UniRef90	UHGV-0198823_52	UniRef90_A0A2A7B6S8	553.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0198823_52	349161.Dred_2606	261.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0198823_52	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0198823_52	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0198823_52	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0198823_52	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0198823_53	K01358	72.6	6.7e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0198823_53	phrog_94	127.2	1.8e-37	head maturation protease	head and packaging
UniRef90	UHGV-0198823_53	UniRef90_UPI00111E41DA	138.0	1.08e-36	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0198823_53	1232452.BAIB02000007_gene1626	129.0	8.77e-34	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0198823_53	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0198823_53	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0198823_53	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_54	phrog_10	130.9	7.3e-39	major head protein	head and packaging
UniRef90	UHGV-0198823_54	UniRef90_A0A2A7B712	723.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0198823_54	1235792.C808_00086	449.0	0	Phage capsid family	N/A
Pfam	UHGV-0198823_54	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0198823_54	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0198823_54	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0198823_54	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0198823_54	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_55	phrog_749	58.8	8.4e-17	N/A	unknown function
UniRef90	UHGV-0198823_55	UniRef90_A0A371IJS1	50.1	0.00000879	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0198823_55	1211817.CCAT010000053_gene2133	69.7	0.0000000000000434	N/A	N/A
PHROG	UHGV-0198823_56	phrog_19734	97.6	9.5e-29	N/A	unknown function
UniRef90	UHGV-0198823_56	UniRef90_A0A0D8I708	81.6	2.36e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0198823_56	349161.Dred_2602	75.9	6.9e-16	N/A	N/A
structural_annotation	UHGV-0198823_56	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0198823_57	999413.HMPREF1094_02005	65.9	0.00000000000161	N/A	N/A
structural_annotation	UHGV-0198823_57	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_58	phrog_5	48.6	0.000000000000066	tail completion or Neck1 protein	connector
UniRef90	UHGV-0198823_58	UniRef90_A0A1C6FG30	117.0	3.43e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0198823_58	33035.JPJF01000039_gene277	112.0	5.2e-29	N/A	N/A
structural_annotation	UHGV-0198823_58	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_59	phrog_88	91.8	7.2e-27	major tail protein	tail
UniRef90	UHGV-0198823_59	UniRef90_A0A3R6A072	102.0	1.15e-23	Phage tail protein	N/A
eggNOG-mapper	UHGV-0198823_59	349161.Dred_2600	64.3	0.00000000101	N/A	N/A
NCBIFam	UHGV-0198823_59	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0198823_59	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_61	phrog_9959	87.0	1.1e-25	tail length tape measure protein	tail
UniRef90	UHGV-0198823_61	UniRef90_A0A2A7ALS3	828.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0198823_61	1123488.ATUF01000005_gene1400	154.0	1.87e-35	tape measure	N/A
Pfam	UHGV-0198823_61	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0198823_61	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0198823_61	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0198823_61	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_62	phrog_33	71.5	1.8e-20	distal tail protein Dit	tail
UniRef90	UHGV-0198823_62	UniRef90_A0A173Z1X4	137.0	3.38e-36	Phage-related protein	N/A
eggNOG-mapper	UHGV-0198823_62	908340.HMPREF9406_2569	87.8	3.62e-18	phage tail	N/A
NCBIFam	UHGV-0198823_62	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0198823_62	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0198823_62	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_63	phrog_1067	173.1	0	minor head protein	head and packaging
UniRef90	UHGV-0198823_63	UniRef90_A0A2A7AM44	703.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0198823_63	1123263.AUKY01000068_gene489	187.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0198823_63	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0198823_63	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0198823_63	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0198823_63	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0198823_65	phrog_37952	97.0	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0198823_65	657309.BXY_07680	193.0	0	N/A	N/A