UHGV-0200167 (vOTU-066175)

Viral Genome: UHGV-0200167

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0200167
vOTU ID	vOTU-066175
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781713_a1_ct99242_vs1@Myoviridae__sp._cthCE1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.18 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.95
Jumbo phage	No

Genome content
Genome length (bp)	38,214
GC content	58.41%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	96%
Average CDS length (bps)	640.68
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0200167_1	411469.EUBHAL_02490	50.8	0.00000848	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0200167_1	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
COG	UHGV-0200167_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0200167_3	phrog_7566	105.8	2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0200167_3	483218.BACPEC_01171	76.6	8.24e-17	N/A	N/A
PHROG	UHGV-0200167_4	phrog_323	69.0	5.3e-32	endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0200167_4	PF13921	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-bind_6
Pfam	UHGV-0200167_4	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
Pfam	UHGV-0200167_4	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
dbAPIS	UHGV-0200167_4	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
PHROG	UHGV-0200167_8	phrog_111	162.7	0	DNA methyltransferase	other
UniRef90	UHGV-0200167_8	UniRef90_A0A1C6GCR8	194.0	0	Phage N-6-adenine-methyltransferase	N/A
eggNOG-mapper	UHGV-0200167_8	445972.ANACOL_03344	172.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0200167_8	oMTase_00015	155.4	0	orphan methyltransferase	RM
Pfam	UHGV-0200167_8	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0200167_8	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0200167_9	phrog_355	74.0	1.9e-21	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200167_9	UniRef90_UPI001C01DAF6	77.4	1.64e-16	N/A	N/A
eggNOG-mapper	UHGV-0200167_9	2342.SOPEG_2218	73.6	0.00000000000000107	N/A	N/A
Pfam	UHGV-0200167_9	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0200167_9	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0200167_9	PF14359,TIGR02133,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0200167_10	K00558	207.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0200167_10	phrog_116	243.8	0	DNA methyltransferase	other
UniRef90	UHGV-0200167_10	UniRef90_A0A316S792	364.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0200167_10	457421.CBFG_04228	297.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0200167_10	oMTase_00004	297.3	0	orphan methyltransferase	RM
Pfam	UHGV-0200167_10	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0200167_10	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0200167_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0200167_10	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0200167_11	phrog_9236	98.4	6.3e-29	pyrophosphatase	other
eggNOG-mapper	UHGV-0200167_11	755731.Clo1100_1151	115.0	8.12e-30	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-0200167_11	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0200167_11	PF08761,COG4508	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200167_13	UniRef90_U2SKB7	147.0	1.8357e-43	N/A	N/A
Pfam	UHGV-0200167_13	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0200167_13	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0200167_14	K07726	42.4	2.9e-22	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0200167_14	phrog_374	62.2	1.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0200167_14	742738.HMPREF9460_00886	117.0	3.9e-29	N/A	N/A
Pfam	UHGV-0200167_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0200167_14	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
NCBIFam	UHGV-0200167_14	TIGR03830.1	N/A	N/A	type II TA system antitoxin MqsA family protein	N/A
PHROG	UHGV-0200167_15	phrog_25567	41.7	0.000000000015	N/A	unknown function
UniRef90	UHGV-0200167_15	UniRef90_UPI00164AED9E	76.3	0.00000000000000115	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0200167_15	1235798.C817_04600	68.2	0.000000000000273	N/A	N/A
structural_annotation	UHGV-0200167_15	NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0200167_20	phrog_36	71.2	1.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0200167_20	UniRef90_A0A4R2RPV6	59.3	0.0000000143	RNA polymerase sigma factor (Sigma-70 family)	N/A
Pfam	UHGV-0200167_20	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0200167_20	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
KOfam	UHGV-0200167_21	K07474	135.0	9.2e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0200167_21	phrog_51	124.9	5.6e-37	terminase small subunit	head and packaging
UniRef90	UHGV-0200167_21	UniRef90_A0A417PRW3	163.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0200167_21	742740.HMPREF9474_03499	155.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0200167_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0200167_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0200167_21	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0200167_22	K06909	118.8	5.9e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0200167_22	phrog_979	168.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0200167_22	UniRef90_A0A1C6A5M6	530.0	0	Terminase-like family	N/A
eggNOG-mapper	UHGV-0200167_22	1408437.JNJN01000002_gene1397	458.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0200167_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0200167_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0200167_22	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0200167_24	phrog_156	106.9	2.3e-32	portal protein	head and packaging
eggNOG-mapper	UHGV-0200167_24	1408437.JNJN01000001_gene1708	413.0	0	N/A	N/A
structural_annotation	UHGV-0200167_24	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0200167_25	1408437.JNJN01000002_gene1393	60.5	0.00000012	N/A	N/A
PHROG	UHGV-0200167_26	phrog_422	118.2	6.7e-35	major head protein	head and packaging
UniRef90	UHGV-0200167_26	UniRef90_UPI00082A3F03	276.0	0	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0200167_26	1408437.JNJN01000001_gene1710	232.0	0	N/A	N/A
Pfam	UHGV-0200167_26	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0200167_26	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200167_27	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0200167_28	phrog_3287	193.3	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0200167_28	1232449.BAHV02000016_gene1816	427.0	0	N/A	N/A
structural_annotation	UHGV-0200167_28	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0200167_29	K12943	52.1	0.000000000000007	ygeR; lipoprotein YgeR	N/A
eggNOG-mapper	UHGV-0200167_29	1297742.A176_07647	63.2	0.0000000473	Chitinase class I	N/A
Pfam	UHGV-0200167_29	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0200167_29	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-0200167_30	phrog_22978	99.5	1.2e-29	N/A	unknown function
UniRef90	UHGV-0200167_30	UniRef90_A0A415ZLH4	457.0	0	M23 family peptidase	N/A
eggNOG-mapper	UHGV-0200167_30	1232449.BAHV02000016_gene1805	384.0	0	N/A	N/A
Pfam	UHGV-0200167_30	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-0200167_31	1232449.BAHV02000016_gene1815	62.0	0.0000000234	N/A	N/A
KOfam	UHGV-0200167_34	K01342	182.0	0	aprE; subtilisin [EC:3.4.21.62]	N/A
PHROG	UHGV-0200167_34	phrog_3677	123.9	8.6e-37	protease	other
UniRef90	UHGV-0200167_34	UniRef90_A0A354D614	122.0	6.4e-29	Peptidase S8	N/A
eggNOG-mapper	UHGV-0200167_34	411490.ANACAC_01267	121.0	4.2e-29	Belongs to the peptidase S8 family	N/A
PADLOC	UHGV-0200167_34	subtilase	69.8	7.3e-20	N/A	N/A
Pfam	UHGV-0200167_34	PF00082	N/A	N/A	Subtilase family	Peptidase_S8
COG	UHGV-0200167_34	COG1404	N/A	N/A	Serine protease, subtilisin family	N/A
PHROG	UHGV-0200167_35	phrog_2649	46.9	0.00000000000023	endolysin	lysis
eggNOG-mapper	UHGV-0200167_35	263358.VAB18032_21750	54.3	0.00000843	PFAM Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0200167_35	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0200167_35	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0200167_35	PF05951,PF01471,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0200167_37	phrog_443	55.8	0.0000000000000013	holin	lysis
UniRef90	UHGV-0200167_37	UniRef90_UPI001B3C9F75	94.7	3.2e-24	holin	N/A
eggNOG-mapper	UHGV-0200167_37	1469948.JPNB01000002_gene3855	86.3	1.28e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0200167_37	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0200167_37	PF16945	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200167_40	UniRef90_A0A8D9PDT7	111.0	3.54e-30	Membrane fusogenic activity protein	N/A
PHROG	UHGV-0200167_42	phrog_16490	74.6	1.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0200167_42	397290.C810_05212	68.6	0.0000000000383	N/A	N/A
structural_annotation	UHGV-0200167_43	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200167_44	UniRef90_A0A843GWV6	64.7	0.0000000000186	Rubrerythrin domain-containing protein	N/A
KOfam	UHGV-0200167_45	K06400	284.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0200167_45	phrog_95	294.8	0	integrase	integration and excision
UniRef90	UHGV-0200167_45	UniRef90_A0A542AKB8	506.0	0	DNA invertase Pin-like site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-0200167_45	697281.Mahau_2563	491.0	0	resolvase	N/A
Pfam	UHGV-0200167_45	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0200167_45	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0200167_45	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0200167_45	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0200167_45	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-0200167_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0200167_46	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0200167_48	K18830	61.6	1e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0200167_48	phrog_4	46.1	0.0000000000012	transcriptional repressor	transcription regulation
UniRef90	UHGV-0200167_48	UniRef90_R9LY91	132.0	1.05e-36	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0200167_48	1235797.C816_03553	132.0	1.77e-37	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0200167_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0200167_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0200167_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0200167_52	K07741	91.8	1.8e-26	antB; anti-repressor protein	N/A
PHROG	UHGV-0200167_52	phrog_130	166.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0200167_52	UniRef90_UPI001C3C1005	288.0	0	Phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0200167_52	1536774.H70357_24840	234.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0200167_52	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0200167_52	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0200167_52	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0200167_52	PF03374,PF02498,COG3645,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0200167_56	K03091	47.4	0.00000000000037	sigH; RNA polymerase sporulation-specific sigma factor	N/A
Pfam	UHGV-0200167_56	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0200167_56	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0200167_57	phrog_9474	127.1	1.7e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0200167_57	138119.DSY2199	78.2	0.000000000000005	Replication initiation and membrane attachment	N/A
COG	UHGV-0200167_57	COG3935	N/A	N/A	DNA replication protein DnaD	N/A