UHGV-0201127 (vOTU-004091)

Viral Genome: UHGV-0201127

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0201127
vOTU ID	vOTU-004091
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781682_a1_ct25501_vs1@Siphoviridae__sp._ctIcI1
Associated BioSample	SAMN09781682
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9625
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.68
Jumbo phage	No

Genome content
Genome length (bp)	35,144
GC content	45.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	93%
Average CDS length (bps)	592.31
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0201127_1	phrog_27197	118.5	0	N/A	unknown function
COG	UHGV-0201127_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0201127_1	NF007410	N/A	N/A	N/A	N/A
Pfam	UHGV-0201127_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0201127_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0201127_4	UniRef90_A0A354UNG6	80.5	1.36e-18	Transcriptional regulator	N/A
Pfam	UHGV-0201127_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0201127_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0201127_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0201127_5	K22300	48.0	0.00000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0201127_5	phrog_8	63.7	4.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0201127_5	UniRef90_A0A316QMP7	107.0	3.65e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0201127_5	1069534.LRC_08890	67.0	0.000000000000263	sequence-specific DNA binding	N/A
PADLOC	UHGV-0201127_5	retron_type_VI_hth_cluster2_1	41.4	0.000000000042	N/A	Retron
Pfam	UHGV-0201127_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0201127_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0201127_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0201127_9	phrog_7838	143.2	1.80067e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201127_9	UniRef90_A0A8D9UGW3	183.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0201127_9	742767.HMPREF9456_02052	189.0	0	N/A	N/A
structural_annotation	UHGV-0201127_9	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0201127_11	phrog_774	50.9	0.000000000000032	N/A	unknown function
structural_annotation	UHGV-0201127_11	PF10458	N/A	N/A	N/A	N/A
KOfam	UHGV-0201127_12	K03111	138.8	5.49996e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0201127_12	phrog_44	131.9	4.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201127_12	UniRef90_R7FWV6	177.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0201127_12	1121423.JONT01000019_gene1545	122.0	5.99e-34	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0201127_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0201127_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0201127_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0201127_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0201127_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0201127_13	phrog_190	99.9	2.2e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201127_13	UniRef90_UPI000C817A46	103.0	5.88e-26	N/A	N/A
eggNOG-mapper	UHGV-0201127_13	445974.CLORAM_02947	99.0	7.78e-25	N/A	N/A
Pfam	UHGV-0201127_13	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0201127_13	PF06356,MF_04160,NF033179,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0201127_14	phrog_2562	83.3	3.3e-24	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0201127_14	1507.HMPREF0262_00435	65.5	0.00000000223	N/A	N/A
Pfam	UHGV-0201127_14	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0201127_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0201127_14	PF14297	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201127_18	PF07374,MF_00674,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0201127_19	K00558	67.7	3.7e-25	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0201127_19	phrog_17284	136.2	0	N/A	unknown function
UniRef90	UHGV-0201127_19	UniRef90_A0A3D2D5S6	855.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0201127_19	1291050.JAGE01000001_gene476	386.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0201127_19	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0201127_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0201127_19	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0201127_21	phrog_3136	127.6	4.2e-38	N/A	unknown function
UniRef90	UHGV-0201127_21	UniRef90_UPI001CBCD733	121.0	4.37e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0201127_21	97139.C824_00742	52.0	0.0000081	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0201127_21	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0201127_21	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0201127_22	K00390	80.3	2.1e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0201127_22	phrog_424	129.5	2.1e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0201127_22	UniRef90_A0A3D4KZM8	375.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0201127_22	1280696.ATVY01000096_gene1971	331.0	0	N/A	N/A
Pfam	UHGV-0201127_22	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0201127_22	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0201127_22	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0201127_27	K07474	97.0	3.8e-28	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0201127_27	phrog_51	99.5	3.2e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0201127_27	UniRef90_E5BHZ1	100.0	2.22e-24	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0201127_27	1123405.AUMM01000017_gene2713	89.4	3.84e-21	Terminase, small subunit	N/A
Pfam	UHGV-0201127_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0201127_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0201127_27	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0201127_28	K06909	122.8	3.1e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0201127_28	phrog_2	134.7	9.5e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0201127_28	UniRef90_A0A3C1A8K4	217.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0201127_28	642492.Clole_0814	171.0	1.4013e-45	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0201127_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0201127_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0201127_28	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0201127_29	phrog_533	90.8	8.6e-27	portal protein	head and packaging
structural_annotation	UHGV-0201127_29	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0201127_30	phrog_581	89.1	3.9e-26	minor head protein	head and packaging
UniRef90	UHGV-0201127_30	UniRef90_A0A2Z4GUI4	214.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0201127_30	997296.PB1_16234	61.6	0.0000000535	Phage minor capsid protein 2	N/A
Pfam	UHGV-0201127_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0201127_30	COG2369	N/A	N/A	N/A	N/A
Pfam	UHGV-0201127_32	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0201127_32	PF05065,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201127_34	PF07405,TIGR01563	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201127_35	UniRef90_A0A2Z4GU91	91.7	4.52e-22	Minor capsid protein	N/A
structural_annotation	UHGV-0201127_36	PF09393,PF05561,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201127_38	PF09097,TIGR02126	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201127_42	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
Pfam	UHGV-0201127_43	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-0201127_45	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0201127_49	K14059	182.0	0	int; integrase	N/A
PHROG	UHGV-0201127_49	phrog_1	164.8	0	integrase	integration and excision
UniRef90	UHGV-0201127_49	UniRef90_A0A353EXX9	464.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0201127_49	397287.C807_03910	144.0	6.3e-37	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0201127_49	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0201127_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0201127_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0201127_49	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201127_50	UniRef90_A0A354UMM3	105.0	6.12e-27	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0201127_50	411462.DORLON_02355	50.8	0.00000843	Putative restriction endonuclease	N/A
Pfam	UHGV-0201127_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0201127_50	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0201127_50	PF01381,NF040507,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0201127_53	K22300	62.8	6.7e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0201127_53	phrog_8	65.6	1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0201127_53	UniRef90_A0A8J8SBE0	98.2	2.16e-24	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0201127_53	1123511.KB905868_gene209	77.8	1.27e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0201127_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0201127_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0201127_53	PF13560,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201127_54	UniRef90_UPI000C068531	57.8	0.00000000313	N/A	N/A
eggNOG-mapper	UHGV-0201127_54	632245.CLP_1602	50.1	0.000000484	domain protein	N/A
Pfam	UHGV-0201127_54	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0201127_54	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0201127_55	phrog_4433	219.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0201127_55	33035.JPJF01000122_gene2458	119.0	4.05e-30	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0201127_55	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A