UHGV-0201796 (vOTU-029198)

Viral Genome: UHGV-0201796

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0201796
vOTU ID	vOTU-029198
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781730_a1_ct63132_vs1@Siphoviridae__sp._ctxvK1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.14
Jumbo phage	No

Genome content
Genome length (bp)	30,097
GC content	41.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	91%
Average CDS length (bps)	455.20
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0201796_3	phrog_8680	232.4	0	N/A	unknown function
UniRef90	UHGV-0201796_3	UniRef90_A0A412EKN2	431.0	0	N/A	N/A
eggNOG-mapper	UHGV-0201796_3	411470.RUMGNA_02208	286.0	0	N/A	N/A
Pfam	UHGV-0201796_3	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0201796_3	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_5	phrog_1129	75.8	3.4e-22	holin	lysis
UniRef90	UHGV-0201796_5	UniRef90_A0A395X7B2	174.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0201796_5	411461.DORFOR_00721	113.0	1.02e-31	N/A	N/A
Pfam	UHGV-0201796_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0201796_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_7	phrog_541	97.4	6.2e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0201796_7	476272.RUMHYD_01778	110.0	1.46e-28	N/A	N/A
PHROG	UHGV-0201796_9	phrog_544	160.8	0	major head protein	head and packaging
UniRef90	UHGV-0201796_9	UniRef90_A0A395X7A1	680.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0201796_9	1232453.BAIF02000011_gene3359	386.0	0	N/A	N/A
Pfam	UHGV-0201796_9	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0201796_9	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_10	phrog_194	66.2	6e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0201796_10	UniRef90_UPI001D14C9C8	187.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0201796_10	476272.RUMHYD_01775	197.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0201796_10	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0201796_10	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201796_12	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_13	phrog_20016	67.5	1.4e-19	N/A	unknown function
UniRef90	UHGV-0201796_13	UniRef90_A0A316MV88	226.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0201796_13	1226322.HMPREF1545_00077	64.7	0.00000000003	N/A	N/A
structural_annotation	UHGV-0201796_13	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201796_15	476272.RUMHYD_01770	80.1	0.00000000000000175	N/A	N/A
PHROG	UHGV-0201796_17	phrog_21718	64.2	2.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0201796_17	1235790.C805_00058	105.0	2.02e-26	N/A	N/A
eggNOG-mapper	UHGV-0201796_19	658655.HMPREF0988_00903	48.1	0.00000103	N/A	N/A
AcrCatalog	UHGV-0201796_20	cluster_47924	86.3	4.51e-26	NA	N/A
Pfam	UHGV-0201796_20	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
UniRef90	UHGV-0201796_21	UniRef90_A0A843HPX3	48.5	0.00000531	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0201796_21	1235790.C805_00057	62.8	0.00000000000216	N/A	N/A
structural_annotation	UHGV-0201796_21	PF13404,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201796_22	UniRef90_A0A395X7A4	180.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0201796_22	476272.RUMHYD_01766	122.0	7.54e-35	N/A	N/A
PHROG	UHGV-0201796_23	phrog_581	234.6	0	minor head protein	head and packaging
UniRef90	UHGV-0201796_23	UniRef90_UPI001C0EDE82	620.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0201796_23	476272.RUMHYD_01761	171.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0201796_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0201796_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201796_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_24	phrog_556	90.4	1.3e-26	minor head protein	head and packaging
UniRef90	UHGV-0201796_24	UniRef90_UPI001C0ECC47	232.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0201796_24	1449343.JQLQ01000002_gene1329	56.6	0.0000000203	Minor capsid protein	N/A
Pfam	UHGV-0201796_24	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0201796_24	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_26	phrog_19519	48.6	0.000000000000025	neck protein	connector
UniRef90	UHGV-0201796_26	UniRef90_UPI001E2D7315	88.6	0.00000000000000859	phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0201796_26	476272.RUMHYD_00002	174.0	1.13505e-43	N/A	N/A
PHROG	UHGV-0201796_27	phrog_533	272.0	0	portal protein	head and packaging
UniRef90	UHGV-0201796_27	UniRef90_A0A1C6CDM8	679.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0201796_27	33035.JPJF01000106_gene3135	509.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0201796_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0201796_29	K06909	408.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0201796_29	phrog_3717	171.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0201796_29	UniRef90_A0A1C6CDG5	780.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0201796_29	33035.JPJF01000106_gene3136	686.0	0	Terminase small subunit	N/A
Pfam	UHGV-0201796_29	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0201796_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0201796_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0201796_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0201796_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0201796_29	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_30	phrog_33130	105.1	2.4e-31	N/A	unknown function
structural_annotation	UHGV-0201796_30	PF10922,MF_00839	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201796_32	UniRef90_A0A415TX35	65.1	0.000000000177	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-0201796_32	1235793.C809_02210	98.6	1.59e-24	N/A	N/A
structural_annotation	UHGV-0201796_32	PF06442,TIGR02097	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201796_34	UniRef90_A0A373NR41	119.0	3.64e-32	N/A	N/A
PHROG	UHGV-0201796_37	phrog_954	238.4	0	DNA methyltransferase	other
UniRef90	UHGV-0201796_37	UniRef90_UPI001898E47B	258.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0201796_37	1145276.T479_16310	220.0	0	methyltransferase	N/A
PADLOC	UHGV-0201796_37	MTase_II_00074	223.5	0	Type II methyltransferase	RM
COG	UHGV-0201796_37	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0201796_38	411459.RUMOBE_01111	64.7	0.0000000000345	N/A	N/A
UniRef90	UHGV-0201796_39	UniRef90_A0A373P4I4	59.7	0.000000000673	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0201796_39	PF12840	N/A	N/A	Helix-turn-helix domain	HTH_20
structural_annotation	UHGV-0201796_39	PF01726,COG0640	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201796_40	1235800.C819_02256	229.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0201796_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0201796_40	PF01507	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_42	phrog_8841	560.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201796_42	UniRef90_A0A412EL97	1110.0	0	N/A	N/A
eggNOG-mapper	UHGV-0201796_42	476272.RUMHYD_01742	779.0	0	N/A	N/A
Pfam	UHGV-0201796_42	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0201796_42	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0201796_42	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201796_42	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0201796_43	K02316	62.6	6.1e-18	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0201796_43	phrog_11992	158.2	0	N/A	unknown function
UniRef90	UHGV-0201796_43	UniRef90_A0A412EM56	288.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0201796_43	476272.RUMHYD_01741	177.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0201796_43	drt-UG29	56.0	4.5e-16	DRT	DRT
Pfam	UHGV-0201796_43	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0201796_43	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0201796_43	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_44	phrog_3490	140.3	9.69979e-42	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201796_44	UniRef90_A0A395XB48	320.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0201796_44	357809.Cphy_2986	213.0	0	N/A	N/A
Pfam	UHGV-0201796_44	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0201796_44	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0201796_45	K03111	129.1	5e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0201796_45	phrog_44	138.4	4.30002e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201796_45	UniRef90_A0A412ELG8	241.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0201796_45	658655.HMPREF0988_02584	177.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0201796_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0201796_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0201796_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0201796_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0201796_45	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_46	phrog_155	148.2	4.2039e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201796_46	UniRef90_A0A1V5UPJ3	188.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0201796_46	762982.HMPREF9442_00551	173.0	0	Erf family	N/A
Pfam	UHGV-0201796_46	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0201796_46	PF04404,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201796_47	UniRef90_UPI000E53E799	98.2	1.39e-25	N/A	N/A
Pfam	UHGV-0201796_47	PF20063	N/A	N/A	N/A	DUF6462
UniRef90	UHGV-0201796_48	UniRef90_R6RDX0	82.4	2.23e-19	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-0201796_49	NF001645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201796_51	PF10922,TIGR03741	N/A	N/A	N/A	N/A
PHROG	UHGV-0201796_54	phrog_6058	49.6	0.000000000000042	N/A	unknown function
UniRef90	UHGV-0201796_54	UniRef90_A0A4Q7P3C7	64.7	0.0000000000164	Prolyl-tRNA synthetase	N/A
eggNOG-mapper	UHGV-0201796_54	665956.HMPREF1032_00623	68.9	0.0000000000000598	N/A	N/A
PHROG	UHGV-0201796_55	phrog_14105	385.1	0	N/A	unknown function
UniRef90	UHGV-0201796_55	UniRef90_U2BMS0	260.0	0	Pentapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0201796_55	97138.C820_00368	177.0	0	PPE family	N/A
Pfam	UHGV-0201796_55	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0201796_55	COG5651	N/A	N/A	PPE-repeat protein	N/A
UniRef90	UHGV-0201796_60	UniRef90_A0A395X814	140.0	2.40042e-42	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0201796_60	1121289.JHVL01000079_gene1187	60.8	0.000000000016	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0201796_60	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0201796_60	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A