UHGV-0201799 (vOTU-047534)

Viral Genome: UHGV-0201799

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0201799
vOTU ID	vOTU-047534
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781730_a1_ct69315@circular@Siphoviridae__sp._ctSeR315
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.33
Jumbo phage	No

Genome content
Genome length (bp)	44,071
GC content	53.27%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	91%
Average CDS length (bps)	533.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0201799_1	phrog_144	62.7	6.7e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201799_1	UniRef90_R4JX48	78.2	1.35e-16	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0201799_1	1405.DJ92_863	78.2	1.93e-17	HNH endonuclease	N/A
Pfam	UHGV-0201799_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0201799_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0201799_3	phrog_2059	89.5	4.5e-26	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0201799_3	UniRef90_A0A1C5W2Q0	119.0	4.8e-30	Antirestriction protein	N/A
eggNOG-mapper	UHGV-0201799_3	1121334.KB911068_gene2318	113.0	1.14e-28	Antirestriction protein (ArdA)	N/A
Pfam	UHGV-0201799_3	PF07275	N/A	N/A	Antirestriction protein (ArdA)	ArdA
dbAPIS	UHGV-0201799_3	APIS003	N/A	N/A	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	N/A
COG	UHGV-0201799_3	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0201799_3	PF07275,COG4734	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201799_6	PF08681	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_11	phrog_3584	207.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201799_11	UniRef90_I2E8X7	129.0	6.09e-33	Gp31	N/A
eggNOG-mapper	UHGV-0201799_11	1519439.JPJG01000060_gene1883	181.0	0	N/A	N/A
structural_annotation	UHGV-0201799_11	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_12	phrog_190	125.8	2.9e-37	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201799_12	UniRef90_A0A845R8D4	136.0	5.81e-38	N/A	N/A
eggNOG-mapper	UHGV-0201799_12	693746.OBV_25250	129.0	3.85e-36	N/A	N/A
Pfam	UHGV-0201799_12	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0201799_12	PF06356,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_14	phrog_24518	79.0	5.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0201799_14	1519439.JPJG01000077_gene922	111.0	1.96e-27	N/A	N/A
Pfam	UHGV-0201799_19	PF00627	N/A	N/A	UBA/TS-N domain	UBA
KOfam	UHGV-0201799_21	K00571	100.5	1.2e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0201799_21	phrog_23224	112.2	1.2e-35	DNA methyltransferase	other
UniRef90	UHGV-0201799_21	UniRef90_UPI001E30CE28	258.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0201799_21	1268240.ATFI01000007_gene431	185.0	0	DNA methylase	N/A
PADLOC	UHGV-0201799_21	MTase_II_00172	115.4	6.7e-34	Type II methyltransferase	RM
Pfam	UHGV-0201799_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0201799_21	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0201799_21	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201799_22	NF037951	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201799_23	1235802.C823_05483	64.7	0.0000000000301	N/A	N/A
PHROG	UHGV-0201799_25	phrog_8	47.6	0.00000000000035	transcriptional regulator	transcription regulation
Pfam	UHGV-0201799_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0201799_25	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0201799_25	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201799_29	UniRef90_A0A098GES5	107.0	2.16e-28	Putative phage associated protein	N/A
structural_annotation	UHGV-0201799_29	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_33	phrog_478	113.2	1.2e-33	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0201799_33	UniRef90_R6R5K5	119.0	6.61e-32	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0201799_33	1111121.HMPREF1247_0834	129.0	7.06e-37	N/A	N/A
structural_annotation	UHGV-0201799_36	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201799_37	PF13463,MF_01909,NF033788,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0201799_40	K22300	68.9	9.3e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0201799_40	phrog_4	50.1	0.000000000000061	transcriptional repressor	transcription regulation
UniRef90	UHGV-0201799_40	UniRef90_A0A1I0WH34	105.0	1.39e-26	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0201799_40	1235797.C816_03553	95.9	3.44e-23	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0201799_40	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0201799_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0201799_40	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_41	phrog_15667	93.6	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0201799_41	33035.JPJF01000109_gene437	73.9	0.00000000000466	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0201799_41	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0201799_41	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0201799_41	PF02631,MF_01114,NF001056,COG2137	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201799_43	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0201799_44	K06400	357.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0201799_44	phrog_95	351.9	0	integrase	integration and excision
UniRef90	UHGV-0201799_44	UniRef90_A0A3A6JR24	368.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0201799_44	665956.HMPREF1032_03589	368.0	0	N/A	N/A
Pfam	UHGV-0201799_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0201799_44	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0201799_44	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0201799_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0201799_44	PF00239,PF07508,PF15188,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201799_45	1408437.JNJN01000043_gene801	71.2	0.000000000000468	N/A	N/A
structural_annotation	UHGV-0201799_46	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_47	phrog_16490	54.6	0.0000000000000022	N/A	unknown function
PHROG	UHGV-0201799_48	phrog_59	139.0	1.49995e-41	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201799_48	UniRef90_A0A357JCP2	135.0	3.17e-35	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0201799_48	324831.LGAS_0604	122.0	1.19e-31	NUMOD1 domain	N/A
PADLOC	UHGV-0201799_48	HEase_00016	98.4	1.2e-28	homing endonuclease	RM
Pfam	UHGV-0201799_48	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0201799_48	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0201799_48	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0201799_48	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0201799_52	K07726	45.7	0.0000000000011	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0201799_52	phrog_2104	44.1	0.0000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0201799_52	1410631.JHWZ01000002_gene1263	62.0	0.000000000195	sequence-specific DNA binding	N/A
Pfam	UHGV-0201799_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0201799_52	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0201799_52	PF01381,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201799_54	PF13404,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0201799_55	K07273	177.1	0	acm; lysozyme	N/A
PHROG	UHGV-0201799_55	phrog_291	142.1	4.60046e-42	endolysin	lysis
UniRef90	UHGV-0201799_55	UniRef90_A0A6S6X8V6	171.0	0	Putative Lysozyme	N/A
eggNOG-mapper	UHGV-0201799_55	1304880.JAGB01000002_gene2202	167.0	0	Glycosyl hydrolase, family 25	N/A
Pfam	UHGV-0201799_55	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0201799_55	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0201799_55	PF01183,PF19127,TIGR04035,TIGR04303,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_56	phrog_443	63.6	5e-18	holin	lysis
UniRef90	UHGV-0201799_56	UniRef90_UPI000C852E5F	94.7	4.36e-24	holin	N/A
eggNOG-mapper	UHGV-0201799_56	397288.C806_00114	88.2	2.78e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0201799_56	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0201799_56	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_57	phrog_1863	68.8	4.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0201799_57	665956.HMPREF1032_03922	99.0	4.59e-26	N/A	N/A
structural_annotation	UHGV-0201799_60	PF05382,COG3738	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_61	phrog_3558	352.1	0	tail protein	tail
UniRef90	UHGV-0201799_61	UniRef90_UPI001373F113	228.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0201799_61	552396.HMPREF0863_01446	210.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0201799_61	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0201799_61	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0201799_61	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0201799_62	phrog_33	51.2	0.000000000000005	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0201799_62	877414.ATWA01000019_gene2049	93.6	1.54e-19	N/A	N/A
structural_annotation	UHGV-0201799_62	PF05709,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0201799_63	K16808	53.0	6.4e-17	NUMA1; nuclear mitotic apparatus protein 1	N/A
PHROG	UHGV-0201799_63	phrog_1533	347.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0201799_63	UniRef90_A0A7X5IQS8	350.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0201799_63	445972.ANACOL_00191	270.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0201799_63	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0201799_63	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0201799_63	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0201799_63	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_66	phrog_88	60.2	3.6e-17	major tail protein	tail
UniRef90	UHGV-0201799_66	UniRef90_UPI001C027993	58.9	0.000000186	major tail protein	N/A
NCBIFam	UHGV-0201799_66	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0201799_66	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201799_67	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201799_68	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_69	phrog_19734	65.9	6.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0201799_69	349161.Dred_2602	59.7	0.00000000108	N/A	N/A
structural_annotation	UHGV-0201799_69	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_70	phrog_749	53.0	0.0000000000000057	N/A	unknown function
UniRef90	UHGV-0201799_70	UniRef90_A0A4Z0H451	69.7	0.000000000000165	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0201799_70	86416.Clopa_0342	78.2	1.37e-17	N/A	N/A
PHROG	UHGV-0201799_71	phrog_10	116.3	2.8e-34	major head protein	head and packaging
UniRef90	UHGV-0201799_71	UniRef90_UPI001EE92F83	322.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0201799_71	610130.Closa_0744	300.0	0	Phage capsid family	N/A
Pfam	UHGV-0201799_71	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0201799_71	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0201799_71	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0201799_71	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0201799_72	K01358	118.7	5.8e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0201799_72	phrog_94	186.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0201799_72	UniRef90_UPI00156EEE56	172.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0201799_72	553184.ATORI0001_1180	151.0	1.31021e-42	Clp protease	N/A
Pfam	UHGV-0201799_72	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0201799_72	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0201799_72	PF00574,MF_00444,NF009203,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_73	phrog_12	109.5	2.1e-32	portal protein	head and packaging
UniRef90	UHGV-0201799_73	UniRef90_UPI00073F4FD3	167.0	2.66247e-44	phage portal protein	N/A
eggNOG-mapper	UHGV-0201799_73	1220589.CD32_00790	136.0	2e-33	portal protein	N/A
Pfam	UHGV-0201799_73	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0201799_73	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0201799_73	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_74	phrog_9	290.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0201799_74	UniRef90_A0A1T4YES7	604.0	0	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
eggNOG-mapper	UHGV-0201799_74	86416.Clopa_0337	578.0	0	Phage Terminase	N/A
Pfam	UHGV-0201799_74	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0201799_74	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0201799_74	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0201799_74	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0201799_75	phrog_5110	53.7	6.5e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0201799_75	UniRef90_A0A1G4FJQ3	56.6	0.000000267	Putative phage terminase, small subunit, P27 family	N/A