UHGV-0201851 (vOTU-066842)

Viral Genome: UHGV-0201851

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0201851
vOTU ID	vOTU-066842
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN05826966_a1_ct30021_vs1@linear@Siphoviridae__sp._ctpew1
Associated BioSample	SAMN05826966
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.23 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.34
Jumbo phage	No

Genome content
Genome length (bp)	35,312
GC content	37.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	95%
Average CDS length (bps)	647.08
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0201851_1	K07273	90.1	3e-26	acm; lysozyme	N/A
PHROG	UHGV-0201851_1	phrog_291	80.7	2.3e-23	endolysin	lysis
UniRef90	UHGV-0201851_1	UniRef90_A0A174PB89	587.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0201851_1	469596.HMPREF9488_01959	121.0	7.78e-29	Glycosyl hydrolase family 25	N/A
Pfam	UHGV-0201851_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0201851_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0201851_1	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_2	phrog_199	72.4	5.2e-21	holin	lysis
UniRef90	UHGV-0201851_2	UniRef90_A0A3B8UJ75	277.0	0	Holin	N/A
eggNOG-mapper	UHGV-0201851_2	483218.BACPEC_01140	206.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0201851_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0201851_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0201851_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0201851_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_6	phrog_6616	161.5	0	tail protein	tail
UniRef90	UHGV-0201851_6	UniRef90_A0A8D9PGP3	529.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0201851_6	1294142.CINTURNW_1706	262.0	0	Phage minor structural protein	N/A
COG	UHGV-0201851_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0201851_6	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_7	phrog_1401	46.9	0.0000000000004	N/A	unknown function
UniRef90	UHGV-0201851_7	UniRef90_UPI001D00FC65	57.8	0.0000000449	N/A	N/A
eggNOG-mapper	UHGV-0201851_7	1391647.AVSV01000003_gene1820	51.6	0.00000163	N/A	N/A
structural_annotation	UHGV-0201851_7	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_8	phrog_1194	76.9	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0201851_8	33035.JPJF01000093_gene2242	154.0	0	N/A	N/A
structural_annotation	UHGV-0201851_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_9	phrog_1535	283.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0201851_9	UniRef90_A0A1C5PIN9	490.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0201851_9	33035.JPJF01000093_gene2243	384.0	0	phage tail tape measure protein	N/A
COG	UHGV-0201851_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0201851_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_10	phrog_8355	105.1	2.1e-31	N/A	unknown function
UniRef90	UHGV-0201851_10	UniRef90_UPI0006BBA9AA	130.0	2.11e-37	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0201851_10	1151292.QEW_2424	107.0	1.21e-29	N/A	N/A
PHROG	UHGV-0201851_11	phrog_8300	67.4	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0201851_11	1151292.QEW_2425	60.8	0.000000000154	N/A	N/A
structural_annotation	UHGV-0201851_11	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_12	phrog_820	115.9	2.2e-34	major tail protein	tail
UniRef90	UHGV-0201851_12	UniRef90_T3DDR1	180.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0201851_12	1151292.QEW_2426	180.0	0	N/A	N/A
structural_annotation	UHGV-0201851_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_13	phrog_2595	86.9	1.9e-25	head-tail connector protein	connector
UniRef90	UHGV-0201851_13	UniRef90_UPI001D068DAC	142.0	2.73996e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0201851_13	742740.HMPREF9474_03510	129.0	1.35e-36	N/A	N/A
Pfam	UHGV-0201851_13	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0201851_13	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_14	phrog_556	57.8	1.5e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-0201851_14	483218.BACPEC_01151	140.0	2.57993e-41	N/A	N/A
PHROG	UHGV-0201851_15	phrog_8710	136.2	8.39994e-41	N/A	unknown function
eggNOG-mapper	UHGV-0201851_15	742740.HMPREF9474_03508	127.0	8.63e-37	N/A	N/A
structural_annotation	UHGV-0201851_15	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_16	phrog_541	69.0	6.5e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0201851_16	483218.BACPEC_01153	145.0	1.44334e-43	N/A	N/A
PHROG	UHGV-0201851_17	phrog_422	259.7	0	major head protein	head and packaging
UniRef90	UHGV-0201851_17	UniRef90_A0A3D5M0U8	501.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0201851_17	663278.Ethha_1589	375.0	0	N/A	N/A
structural_annotation	UHGV-0201851_17	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_18	phrog_2303	137.3	9.99995e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0201851_18	483218.BACPEC_01156	132.0	1.5e-35	N/A	N/A
PHROG	UHGV-0201851_19	phrog_1048	98.3	1.1e-28	N/A	unknown function
UniRef90	UHGV-0201851_19	UniRef90_A0A350S1T8	142.0	1.17008e-42	N/A	N/A
eggNOG-mapper	UHGV-0201851_19	1280692.AUJL01000027_gene2162	139.0	4.64951e-42	N/A	N/A
Pfam	UHGV-0201851_19	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0201851_19	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0201851_19	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_21	phrog_581	245.2	0	minor head protein	head and packaging
UniRef90	UHGV-0201851_21	UniRef90_A0A413YU28	1082.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0201851_21	1282664.H354_06636	476.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0201851_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0201851_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_22	phrog_533	276.5	0	portal protein	head and packaging
UniRef90	UHGV-0201851_22	UniRef90_A0A3D5LTG9	957.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0201851_22	33035.JPJF01000093_gene2257	571.0	0	N/A	N/A
structural_annotation	UHGV-0201851_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0201851_23	K06909	104.1	1.6e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0201851_23	phrog_2	74.8	1.6e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0201851_23	UniRef90_A0A413YU24	928.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0201851_23	1391647.AVSV01000003_gene1802	522.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0201851_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0201851_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0201851_23	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0201851_24	K07474	162.8	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0201851_24	phrog_51	163.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0201851_24	UniRef90_A0A356C6K0	321.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0201851_24	1499683.CCFF01000014_gene3916	159.0	0	Terminase small subunit	N/A
Pfam	UHGV-0201851_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0201851_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0201851_24	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_25	phrog_36	60.7	3e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0201851_25	397290.C810_01391	103.0	2.18e-26	N/A	N/A
structural_annotation	UHGV-0201851_25	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_29	phrog_463	202.1	0	anti-repressor	transcription regulation
UniRef90	UHGV-0201851_29	UniRef90_A0A3D5LQU6	335.0	0	Toxin Bro	N/A
eggNOG-mapper	UHGV-0201851_29	411490.ANACAC_00813	189.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0201851_29	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0201851_29	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0201851_29	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0201851_29	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201851_30	UniRef90_UPI00157038BF	90.9	6.03e-18	N/A	N/A
eggNOG-mapper	UHGV-0201851_30	397291.C804_01035	122.0	1.34e-30	N/A	N/A
Pfam	UHGV-0201851_30	PF18941	N/A	N/A	N/A	DUF5688
PHROG	UHGV-0201851_32	phrog_17690	129.3	1.2e-38	N/A	unknown function
UniRef90	UHGV-0201851_32	UniRef90_A0A6L5XWF4	109.0	3.11e-28	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0201851_32	33035.JPJF01000123_gene2433	99.4	4.75e-25	N/A	N/A
PHROG	UHGV-0201851_36	phrog_19658	46.9	0.00000000000031	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201851_36	UniRef90_E4QBK3	84.0	4.87e-18	Putative transcriptional regulator, GntR family	N/A
eggNOG-mapper	UHGV-0201851_36	796940.HMPREF9628_00167	134.0	2.15e-36	N/A	N/A
COG	UHGV-0201851_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0201851_36	PF09202,MF_01819,TIGR01610,COG1959	N/A	N/A	N/A	N/A
KOfam	UHGV-0201851_37	K01160	52.5	0.000000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0201851_37	phrog_1682	88.1	1.1e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201851_37	UniRef90_A0A6N7WNE3	192.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0201851_37	33035.JPJF01000071_gene4466	131.0	2.72e-38	crossover junction endodeoxyribonuclease activity	N/A
COG	UHGV-0201851_37	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0201851_37	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_38	phrog_7566	48.9	0.000000000000033	N/A	unknown function
UniRef90	UHGV-0201851_38	UniRef90_A0A373CFM5	101.0	8.06e-26	ClpX-type ZB domain-containing protein	N/A
eggNOG-mapper	UHGV-0201851_38	1304866.K413DRAFT_3017	102.0	4.19e-27	N/A	N/A
PHROG	UHGV-0201851_39	phrog_1227	253.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201851_39	UniRef90_A0A356C6D2	528.0	0	N/A	N/A
eggNOG-mapper	UHGV-0201851_39	1304866.K413DRAFT_3016	396.0	0	N/A	N/A
Pfam	UHGV-0201851_39	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0201851_39	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0201851_39	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_40	phrog_3657	345.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0201851_40	1304866.K413DRAFT_3015	332.0	0	N/A	N/A
PHROG	UHGV-0201851_41	phrog_1499	265.9	0	N/A	unknown function
UniRef90	UHGV-0201851_41	UniRef90_A0A356C6H9	883.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0201851_41	742733.HMPREF9469_01850	606.0	0	DNA recombination	N/A
COG	UHGV-0201851_41	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0201851_41	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_44	phrog_20040	51.5	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0201851_44	1538644.KO02_12130	111.0	3.13e-31	N/A	N/A
structural_annotation	UHGV-0201851_46	COG1321	N/A	N/A	N/A	N/A
KOfam	UHGV-0201851_48	K07729	40.2	0.000000000066	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0201851_48	UniRef90_A0A356C6B4	116.0	2.95e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0201851_48	706433.HMPREF9430_01294	82.8	1.21e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0201851_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0201851_49	K22299	58.7	1.4e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0201851_49	phrog_8	70.5	3.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0201851_49	UniRef90_A0A413YU20	232.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0201851_49	553973.CLOHYLEM_07297	87.8	8.91e-21	Transcriptional	N/A
PADLOC	UHGV-0201851_49	retron_type_VI_hth_cluster2_1	53.2	0.0000000000000052	N/A	Retron
Pfam	UHGV-0201851_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0201851_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0201851_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_50	phrog_20886	46.7	0.00000000000034	N/A	unknown function
UniRef90	UHGV-0201851_50	UniRef90_A0A660M5N1	52.4	0.000000282	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0201851_50	476272.RUMHYD_02825	58.2	0.00000000108	N/A	N/A
structural_annotation	UHGV-0201851_50	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0201851_51	phrog_2546	65.1	2.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0201851_51	768710.DesyoDRAFT_5205	108.0	9.3e-27	PFAM Tellurite resistance protein TerB	N/A
COG	UHGV-0201851_51	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
PHROG	UHGV-0201851_52	phrog_1847	341.6	0	N/A	unknown function
UniRef90	UHGV-0201851_52	UniRef90_A0A174S171	676.0	0	Membrane-bound metallopeptidase	N/A
eggNOG-mapper	UHGV-0201851_52	483218.BACPEC_01182	590.0	0	T5orf172	N/A
Pfam	UHGV-0201851_52	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0201851_52	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0201851_52	PF13250,NF041454	N/A	N/A	N/A	N/A