UHGV-0201938 (vOTU-047541)

Viral Genome: UHGV-0201938

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0201938
vOTU ID	vOTU-047541
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781729_a1_ct8664@circular@Unclassified_virus__sp._ctKdb664
Associated BioSample	SAMN09781729
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-1.07
Jumbo phage	No

Genome content
Genome length (bp)	38,416
GC content	52.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	90%
Average CDS length (bps)	595.97
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0201938_2	1504823.CCMM01000008_gene725	45.8	0.00000784	N/A	N/A
structural_annotation	UHGV-0201938_2	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_3	phrog_15863	153.3	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0201938_3	UniRef90_A0A1Y3R3M0	229.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0201938_3	693746.OBV_01780	174.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0201938_3	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0201938_6	PF17917	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201938_9	UniRef90_A0A7M1RS47	61.6	0.00000000515	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0201938_9	1408437.JNJN01000043_gene801	70.9	0.000000000000691	N/A	N/A
KOfam	UHGV-0201938_10	K14059	95.1	1.1e-27	int; integrase	N/A
PHROG	UHGV-0201938_10	phrog_1	91.1	1.5e-26	integrase	integration and excision
UniRef90	UHGV-0201938_10	UniRef90_R6RH38	230.0	0	Prophage LambdaCh01 site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0201938_10	411468.CLOSCI_00325	205.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0201938_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0201938_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0201938_10	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0201938_12	UniRef90_A0A3A6JSY4	67.8	0.00000000000345	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0201938_12	NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201938_13	246199.CUS_7007	53.9	0.00000427	N/A	N/A
PHROG	UHGV-0201938_14	phrog_997	107.8	7.6e-32	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201938_14	UniRef90_R6MCS9	104.0	1.48e-26	N/A	N/A
eggNOG-mapper	UHGV-0201938_14	1203606.HMPREF1526_01889	147.0	1.82169e-44	replication terminator protein, phage associated	N/A
PHROG	UHGV-0201938_15	phrog_1029	206.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0201938_15	552398.HMPREF0866_01625	199.0	0	N/A	N/A
structural_annotation	UHGV-0201938_15	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0201938_16	K22300	53.5	0.0000000000000057	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0201938_16	phrog_8	45.1	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0201938_16	UniRef90_A0A1S2GHY7	54.3	0.0000000499	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0201938_16	1118060.CAGZ01000012_gene16	51.6	0.000000496	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0201938_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0201938_16	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0201938_17	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_22	phrog_298	84.3	3.9e-25	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201938_22	UniRef90_A0A1C5T0L2	90.1	9.63e-19	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0201938_22	1218075.BAYA01000003_gene606	77.0	0.0000000000000125	N/A	N/A
structural_annotation	UHGV-0201938_22	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_24	phrog_561	127.7	3.1e-38	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201938_24	UniRef90_A0A174RC35	228.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0201938_24	33035.JPJF01000071_gene4462	155.0	7.00649e-45	N/A	N/A
Pfam	UHGV-0201938_24	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0201938_24	PF03837,TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_26	phrog_2562	122.6	4.4e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201938_26	UniRef90_UPI00189A2195	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0201938_26	1235790.C805_00030	179.0	0	N/A	N/A
Pfam	UHGV-0201938_26	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0201938_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0201938_27	phrog_1770	102.8	3.4e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201938_27	UniRef90_A0A1L8CM45	100.0	2.05e-24	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0201938_27	994601.G9BW80_9CAUD	98.6	3.3e-24	nucleic acid binding	N/A
structural_annotation	UHGV-0201938_27	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_28	phrog_15773	68.6	4e-23	N/A	unknown function
dbAPIS	UHGV-0201938_28	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-0201938_29	phrog_757	193.6	0	DNA methyltransferase	other
UniRef90	UHGV-0201938_29	UniRef90_A0A355YQL4	334.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0201938_29	742733.HMPREF9469_01835	327.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0201938_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0201938_29	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_31	phrog_22543	41.9	0.0000000000037	N/A	unknown function
Pfam	UHGV-0201938_31	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-0201938_33	K03091	89.3	6.1e-26	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0201938_33	UniRef90_A0A316LD95	61.6	0.000000012	Sigma70_r2 domain-containing protein	N/A
Pfam	UHGV-0201938_33	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0201938_33	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0201938_33	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0201938_33	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0201938_33	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0201938_34	K01520	166.7	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0201938_34	phrog_135	132.3	2.6e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201938_34	UniRef90_UPI001873736C	193.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0201938_34	1282887.AUJG01000016_gene1113	157.0	0	N/A	N/A
Pfam	UHGV-0201938_34	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0201938_34	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0201938_34	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0201938_34	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201938_35	1121405.dsmv_2591	58.9	0.0000000112	N/A	N/A
Pfam	UHGV-0201938_37	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
UniRef90	UHGV-0201938_38	UniRef90_U2AS96	426.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0201938_38	693746.OBV_01590	342.0	0	N/A	N/A
Pfam	UHGV-0201938_38	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
eggNOG-mapper	UHGV-0201938_39	693746.OBV_01600	57.0	0.00000369	N/A	N/A
PHROG	UHGV-0201938_40	phrog_20388	89.2	4.4e-26	endolysin	lysis
UniRef90	UHGV-0201938_40	UniRef90_UPI00189D4A1D	97.1	1.26e-20	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0201938_40	1203606.HMPREF1526_00253	104.0	6.34e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0201938_40	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0201938_40	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0201938_40	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0201938_40	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0201938_41	K18454	40.2	0.000000000034	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-0201938_41	phrog_30034	119.3	3.7e-35	N/A	unknown function
UniRef90	UHGV-0201938_41	UniRef90_A0A2Y9CAD1	152.0	7.00649e-45	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0201938_41	411460.RUMTOR_02099	132.0	1.14e-36	N/A	N/A
Pfam	UHGV-0201938_41	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0201938_41	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201938_44	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_45	phrog_13518	56.7	1.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0201938_45	1408422.JHYF01000026_gene3527	86.3	8.17e-18	nuclear chromosome segregation	N/A
COG	UHGV-0201938_45	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0201938_46	phrog_5107	40.7	0.000000000018	amidase	lysis
UniRef90	UHGV-0201938_46	UniRef90_A0A4D7ASB8	507.0	0	N/A	N/A
eggNOG-mapper	UHGV-0201938_46	1519439.JPJG01000011_gene54	516.0	0	N/A	N/A
structural_annotation	UHGV-0201938_46	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0201938_47	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0201938_48	1519439.JPJG01000011_gene57	124.0	1.8e-34	N/A	N/A
structural_annotation	UHGV-0201938_48	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_49	phrog_1129	62.5	5e-18	holin	lysis
UniRef90	UHGV-0201938_49	UniRef90_A0A0D8J2M2	118.0	6.65e-33	Enolase	N/A
eggNOG-mapper	UHGV-0201938_49	665956.HMPREF1032_03272	116.0	6.26e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0201938_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0201938_49	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_50	phrog_1863	66.8	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0201938_50	748224.HMPREF9436_00408	95.5	5.03e-25	N/A	N/A
PHROG	UHGV-0201938_51	phrog_422	123.3	1.9e-36	major head protein	head and packaging
UniRef90	UHGV-0201938_51	UniRef90_A0A8J6JH37	292.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0201938_51	693746.OBV_01700	212.0	0	N/A	N/A
Pfam	UHGV-0201938_51	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0201938_51	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_53	phrog_156	90.7	4.8e-28	portal protein	head and packaging
eggNOG-mapper	UHGV-0201938_53	693746.OBV_01670	536.0	0	N/A	N/A
structural_annotation	UHGV-0201938_53	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0201938_55	K06909	49.3	0.000000000000067	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0201938_55	phrog_2	47.3	0.00000000000046	terminase large subunit	head and packaging
UniRef90	UHGV-0201938_55	UniRef90_A0A1M5YHQ5	290.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0201938_55	693746.OBV_01690	254.0	0	phage Terminase large subunit	N/A
COG	UHGV-0201938_55	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0201938_55	PF20441,MF_04148,TIGR01547,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0201938_56	phrog_374	157.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0201938_56	UniRef90_A0A6L8SWJ4	141.0	5.15e-39	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0201938_56	742767.HMPREF9456_02044	150.0	2.11596e-43	N/A	N/A
PHROG	UHGV-0201938_57	phrog_979	49.0	0.000000000000068	terminase large subunit	head and packaging
UniRef90	UHGV-0201938_57	UniRef90_K1TA53	123.0	4.42e-33	Phage terminase, large subunit, PBSX (Fragment)	N/A
eggNOG-mapper	UHGV-0201938_57	693746.OBV_01690	129.0	6.52e-34	phage Terminase large subunit	N/A
COG	UHGV-0201938_57	COG1783	N/A	N/A	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0201938_58	1235802.C823_02864	49.7	0.0000000807	N/A	N/A