UHGV-0202521 (vOTU-090458)

Viral Genome: UHGV-0202521

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0202521
vOTU ID	vOTU-090458
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN05827076_a1_ct4568_vs1@linear@Siphoviridae__sp._ctRXX1
Associated BioSample	SAMN05827076
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.81 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.98
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.99
Jumbo phage	No

Genome content
Genome length (bp)	23,117
GC content	42.04%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	33
CDS density	95%
Average CDS length (bps)	663.73
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.81)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0202521_1	K06400	138.4	6.50006e-41	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0202521_1	phrog_95	136.6	1.8e-40	integrase	integration and excision
UniRef90	UHGV-0202521_1	UniRef90_A0A1Q6KI87	162.0	1.8399e-42	Resolvase/invertase-type recombinase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0202521_1	411470.RUMGNA_02175	149.0	6.6e-38	Resolvase, N terminal domain	N/A
Pfam	UHGV-0202521_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0202521_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0202521_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0202521_1	PF13408,NF041201	N/A	N/A	N/A	N/A
KOfam	UHGV-0202521_2	K07273	151.2	8.40779e-45	acm; lysozyme	N/A
PHROG	UHGV-0202521_2	phrog_291	141.9	4.40008e-42	endolysin	lysis
UniRef90	UHGV-0202521_2	UniRef90_A0A7U9QWG5	445.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0202521_2	97139.C824_02634	160.0	1.17709e-43	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0202521_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0202521_2	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0202521_2	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_4	phrog_17196	108.9	3.8e-32	kinase	other
UniRef90	UHGV-0202521_4	UniRef90_D4L3U0	155.0	2.25e-37	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0202521_4	397290.C810_05240	138.0	2.87e-34	N/A	N/A
structural_annotation	UHGV-0202521_4	PF13619	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_7	phrog_18190	610.6	0	N/A	unknown function
UniRef90	UHGV-0202521_7	UniRef90_UPI001D0767E1	465.0	0	gp58-like family protein	N/A
eggNOG-mapper	UHGV-0202521_7	1235790.C805_00089	344.0	0	N/A	N/A
structural_annotation	UHGV-0202521_7	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_8	phrog_1194	58.9	8.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0202521_8	397290.C810_05238	51.2	0.00000284	N/A	N/A
Pfam	UHGV-0202521_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0202521_8	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_9	phrog_1535	145.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0202521_9	1280692.AUJL01000027_gene2150	125.0	8.23e-27	phage tail tape measure protein	N/A
COG	UHGV-0202521_9	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_10	phrog_706	117.7	7.5e-35	N/A	unknown function
UniRef90	UHGV-0202521_10	UniRef90_UPI001C0F2CC6	186.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0202521_10	411459.RUMOBE_01383	172.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0202521_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0202521_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_11	phrog_11299	114.0	1.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-0202521_11	411459.RUMOBE_01382	102.0	4.78e-26	N/A	N/A
structural_annotation	UHGV-0202521_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_12	phrog_3099	135.4	3.09999e-40	N/A	unknown function
UniRef90	UHGV-0202521_12	UniRef90_A0A7M3SAI1	113.0	5.73e-28	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0202521_12	1160721.RBI_II00532	134.0	5.7e-38	N/A	N/A
structural_annotation	UHGV-0202521_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_13	phrog_3266	73.6	2.1e-21	tail completion	connector
eggNOG-mapper	UHGV-0202521_13	476272.RUMHYD_01781	170.0	0	N/A	N/A
structural_annotation	UHGV-0202521_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_14	phrog_3366	97.6	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0202521_14	476272.RUMHYD_01779	140.0	1.76e-40	N/A	N/A
structural_annotation	UHGV-0202521_14	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_15	phrog_18218	132.2	1.5e-39	N/A	unknown function
UniRef90	UHGV-0202521_15	UniRef90_A0A3D0FFR6	135.0	2.62e-39	Ribonuclease	N/A
eggNOG-mapper	UHGV-0202521_15	411902.CLOBOL_03424	83.6	1.85e-19	N/A	N/A
structural_annotation	UHGV-0202521_15	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_16	phrog_541	90.7	1.1e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0202521_16	397290.C810_05226	111.0	9.18e-29	N/A	N/A
PHROG	UHGV-0202521_17	phrog_544	147.6	7.00649e-44	major head protein	head and packaging
UniRef90	UHGV-0202521_17	UniRef90_A0A810PZM2	317.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0202521_17	1347392.CCEZ01000005_gene1236	213.0	0	N/A	N/A
structural_annotation	UHGV-0202521_17	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_18	phrog_194	83.6	2.8e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0202521_18	UniRef90_UPI001D14C9C8	132.0	3.23e-35	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0202521_18	411460.RUMTOR_02088	102.0	1.92e-24	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0202521_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0202521_18	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_19	phrog_28802	92.9	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0202521_19	476272.RUMHYD_01772	97.4	1.88e-23	N/A	N/A
PHROG	UHGV-0202521_21	phrog_16490	100.4	1.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0202521_21	476272.RUMHYD_01770	143.0	1.8e-39	N/A	N/A
PHROG	UHGV-0202521_22	phrog_22984	77.5	1.4e-22	N/A	unknown function
PHROG	UHGV-0202521_23	phrog_21718	97.1	1.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0202521_23	397290.C810_05210	92.8	9.19e-22	N/A	N/A
UniRef90	UHGV-0202521_24	UniRef90_UPI0004E194C7	52.0	0.000000243	LuxR C-terminal-related transcriptional regulator	N/A
eggNOG-mapper	UHGV-0202521_24	476272.RUMHYD_01951	57.8	0.000000000314	N/A	N/A
structural_annotation	UHGV-0202521_24	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_25	phrog_37604	117.7	3.2e-35	N/A	unknown function
eggNOG-mapper	UHGV-0202521_25	457412.RSAG_01109	115.0	4.73e-31	N/A	N/A
PHROG	UHGV-0202521_26	phrog_3754	92.0	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0202521_26	476272.RUMHYD_01764	130.0	1.14e-37	N/A	N/A
PHROG	UHGV-0202521_27	phrog_581	222.3	0	minor head protein	head and packaging
UniRef90	UHGV-0202521_27	UniRef90_A0A359MUF5	163.0	2.12997e-42	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0202521_27	1235790.C805_00050	237.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0202521_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0202521_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0202521_27	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_28	phrog_556	60.8	1.8e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0202521_28	1235790.C805_00048	101.0	1.13e-24	N/A	N/A
Pfam	UHGV-0202521_28	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0202521_28	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_29	phrog_533	288.3	0	portal protein	head and packaging
UniRef90	UHGV-0202521_29	UniRef90_A0A1C5MB20	545.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0202521_29	33035.JPJF01000106_gene3135	460.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0202521_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_30	phrog_1233	66.8	3.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0202521_30	411490.ANACAC_00786	49.3	0.00000953	N/A	N/A
KOfam	UHGV-0202521_31	K06909	319.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0202521_31	phrog_3717	151.4	4.2039e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0202521_31	UniRef90_A0A416ZL34	695.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0202521_31	397291.C804_01612	413.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0202521_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0202521_31	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0202521_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0202521_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0202521_31	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0202521_32	K07474	101.8	1.3e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0202521_32	phrog_51	106.5	1.1e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0202521_32	UniRef90_A0A1I0K7H5	151.0	8.40779e-45	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0202521_32	1280692.AUJL01000027_gene2167	109.0	8.11e-29	Terminase small subunit	N/A
Pfam	UHGV-0202521_32	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0202521_32	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0202521_32	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0202521_33	phrog_33130	95.2	2.8e-28	N/A	unknown function
UniRef90	UHGV-0202521_33	UniRef90_A0A3B9CD52	112.0	2.62e-30	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0202521_33	PF10922	N/A	N/A	N/A	N/A