UHGV-0202920 (vOTU-126493)

Viral Genome: UHGV-0202920

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0202920
vOTU ID	vOTU-126493
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781788_a1_ct18438_vs1@Siphoviridae__sp._ctOhi1
Associated BioSample	SAMN09781788
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.35 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9819
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.52
Jumbo phage	No

Genome content
Genome length (bp)	23,963
GC content	55.66%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	93%
Average CDS length (bps)	572.08
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0202920_1	K00390	48.4	3.9e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0202920_1	phrog_424	78.7	4e-23	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0202920_1	UniRef90_A0A098AU96	428.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	N/A
eggNOG-mapper	UHGV-0202920_1	1235800.C819_02256	372.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0202920_1	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0202920_1	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0202920_1	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0202920_2	K01160	63.1	7.6e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0202920_2	phrog_34	62.4	8.7e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202920_2	UniRef90_A0A2T0APF7	147.0	2.87266e-43	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0202920_2	561177.ANHYDRO_01396	122.0	2.33e-34	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0202920_2	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0202920_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0202920_2	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0202920_3	K02314	275.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0202920_3	phrog_19	255.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202920_3	UniRef90_A0A3D1XEC3	423.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0202920_3	742738.HMPREF9460_00852	183.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0202920_3	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0202920_3	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0202920_3	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0202920_3	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_4	phrog_2149	69.7	4.1e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0202920_4	742740.HMPREF9474_03117	183.0	0	N/A	N/A
structural_annotation	UHGV-0202920_4	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0202920_5	K03111	163.1	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0202920_5	phrog_44	158.9	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202920_5	UniRef90_UPI001BB47F69	181.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0202920_5	1007096.BAGW01000023_gene151	181.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0202920_5	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0202920_5	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0202920_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0202920_5	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0202920_5	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0202920_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0202920_6	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_7	phrog_7566	88.9	3.3e-26	N/A	unknown function
UniRef90	UHGV-0202920_7	UniRef90_A0A8D9UHC0	154.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0202920_7	693746.OBV_24070	118.0	2.48e-33	N/A	N/A
PHROG	UHGV-0202920_8	phrog_374	66.7	3.8e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0202920_8	1423807.BACO01000037_gene1103	73.6	0.0000000000000361	N/A	N/A
structural_annotation	UHGV-0202920_8	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_9	phrog_72	49.9	0.00000000000002	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202920_9	UniRef90_A0A8D9PDS2	241.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0202920_9	445972.ANACOL_01825	116.0	2.18e-30	N/A	N/A
structural_annotation	UHGV-0202920_9	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_10	phrog_155	86.6	3.6e-25	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202920_10	UniRef90_A0A1C6J8G0	249.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0202920_10	1268072.PSAB_05935	173.0	0	ERF superfamily	N/A
Pfam	UHGV-0202920_10	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0202920_10	PF04404,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0202920_12	PF12773	N/A	N/A	Double zinc ribbon	DZR
UniRef90	UHGV-0202920_14	UniRef90_A0A8D9PDM8	67.0	0.000000000000285	Pyocin activator protein	N/A
PHROG	UHGV-0202920_17	phrog_8	52.6	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0202920_17	UniRef90_A0A096BAN9	73.2	0.00000000000000119	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0202920_17	1121344.JHZO01000003_gene989	65.1	0.00000000000112	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0202920_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0202920_17	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0202920_17	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0202920_18	K22299	46.7	0.00000000000068	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0202920_18	phrog_8	53.2	0.0000000000000068	transcriptional regulator	transcription regulation
UniRef90	UHGV-0202920_18	UniRef90_UPI001ABF7468	54.3	0.000000502	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0202920_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0202920_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0202920_18	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-0202920_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0202920_22	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0202920_23	K14059	147.4	1.49939e-43	int; integrase	N/A
PHROG	UHGV-0202920_23	phrog_1	155.0	0	integrase	integration and excision
UniRef90	UHGV-0202920_23	UniRef90_A0A1C5W824	527.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0202920_23	693746.OBV_41260	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0202920_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0202920_23	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0202920_23	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0202920_24	1408437.JNJN01000043_gene801	67.4	0.0000000000132	N/A	N/A
structural_annotation	UHGV-0202920_25	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_26	phrog_16490	53.2	0.0000000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0202920_26	397290.C810_05212	60.1	0.0000000358	N/A	N/A
KOfam	UHGV-0202920_30	K01448	48.3	0.00000000000013	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0202920_30	phrog_435	82.6	6.1e-24	endolysin	lysis
UniRef90	UHGV-0202920_30	UniRef90_R6GV68	438.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0202920_30	994573.T472_0210960	145.0	9.44994e-41	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0202920_30	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0202920_30	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0202920_30	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0202920_30	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_31	phrog_199	80.1	2.2e-23	holin	lysis
UniRef90	UHGV-0202920_31	UniRef90_UPI001BEFC888	290.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0202920_31	1160721.RBI_I01565	134.0	3.46e-38	Bacteriophage holin family	N/A
Pfam	UHGV-0202920_31	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0202920_31	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0202920_31	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0202920_31	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0202920_33	K10804	40.7	0.000000000029	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0202920_33	phrog_26878	75.0	4.4e-22	virion structural protein	head and packaging
UniRef90	UHGV-0202920_33	UniRef90_A0A329MGX9	117.0	2.86e-25	SGNH_hydro domain-containing protein	N/A
eggNOG-mapper	UHGV-0202920_33	1423755.BAML01000004_gene368	97.4	5.17e-19	lipolytic protein G-D-S-L family	N/A
COG	UHGV-0202920_33	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0202920_35	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_36	phrog_372	231.9	0	tail protein	tail
UniRef90	UHGV-0202920_36	UniRef90_UPI001373A0FD	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-0202920_36	1235802.C823_05263	204.0	0	N/A	N/A
Pfam	UHGV-0202920_36	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0202920_36	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0202920_36	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_37	phrog_6616	114.4	1e-34	tail protein	tail
UniRef90	UHGV-0202920_37	UniRef90_R5GWP5	71.6	0.00000000147	KID repeat family protein	N/A
eggNOG-mapper	UHGV-0202920_37	469596.HMPREF9488_01318	287.0	0	N/A	N/A
structural_annotation	UHGV-0202920_37	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_38	phrog_1194	121.0	4.5e-36	N/A	unknown function
UniRef90	UHGV-0202920_38	UniRef90_A0A4U9RD70	113.0	3.73e-30	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0202920_38	1121333.JMLH01000047_gene1008	119.0	2.77e-33	N/A	N/A
Pfam	UHGV-0202920_38	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0202920_38	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0202920_39	phrog_1535	107.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0202920_39	UniRef90_A0A810PX76	251.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0202920_39	1235797.C816_04182	400.0	0	SLT domain	N/A
COG	UHGV-0202920_39	COG1511	N/A	N/A	N/A	N/A