UHGV-0202988 (vOTU-150085)

Viral Genome: UHGV-0202988

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0202988
vOTU ID	vOTU-150085
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN10080909_a1_ct5123_vs1@linear@Siphoviridae__sp._ctAwB1
Associated BioSample	SAMN10080909
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.3 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.74
Jumbo phage	No

Genome content
Genome length (bp)	20,834
GC content	51.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	95%
Average CDS length (bps)	657.30
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0202988_1	phrog_10	87.3	2.1e-25	major head protein	head and packaging
UniRef90	UHGV-0202988_1	UniRef90_A0A2A7B712	532.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0202988_1	1235792.C808_00086	352.0	0	Phage capsid family	N/A
Pfam	UHGV-0202988_1	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0202988_1	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0202988_1	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0202988_1	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0202988_1	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_2	phrog_749	55.1	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0202988_2	1211817.CCAT010000053_gene2133	62.0	0.0000000000493	N/A	N/A
PHROG	UHGV-0202988_3	phrog_19734	93.7	1.7e-27	N/A	unknown function
UniRef90	UHGV-0202988_3	UniRef90_A0A0D8I708	80.1	1e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0202988_3	349161.Dred_2602	74.7	0.00000000000000207	N/A	N/A
structural_annotation	UHGV-0202988_3	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0202988_4	999413.HMPREF1094_02005	73.2	0.0000000000000022	N/A	N/A
structural_annotation	UHGV-0202988_4	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_5	phrog_5	49.5	0.000000000000076	tail completion or Neck1 protein	connector
UniRef90	UHGV-0202988_5	UniRef90_A0A1C6FG30	132.0	5.17e-36	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0202988_5	908340.HMPREF9406_2573	110.0	1.42e-28	N/A	N/A
NCBIFam	UHGV-0202988_5	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0202988_5	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_6	phrog_88	95.0	7.8e-28	major tail protein	tail
UniRef90	UHGV-0202988_6	UniRef90_G9YSC5	110.0	5.74e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0202988_6	33035.JPJF01000039_gene278	72.4	0.000000000000542	N/A	N/A
NCBIFam	UHGV-0202988_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0202988_6	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_9	phrog_1686	86.9	1.8e-25	tail length tape measure protein	tail
UniRef90	UHGV-0202988_9	UniRef90_A0A2A7ALS3	793.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0202988_9	1123488.ATUF01000005_gene1400	156.0	4.66e-36	tape measure	N/A
Pfam	UHGV-0202988_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0202988_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0202988_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0202988_9	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_10	phrog_33	77.2	3.5e-22	distal tail protein Dit	tail
UniRef90	UHGV-0202988_10	UniRef90_A0A173Z1X4	141.0	7.7e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-0202988_10	908340.HMPREF9406_2569	89.4	9.58e-19	phage tail	N/A
NCBIFam	UHGV-0202988_10	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0202988_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0202988_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_11	phrog_1067	168.3	0	minor head protein	head and packaging
UniRef90	UHGV-0202988_11	UniRef90_A0A2A7AM44	703.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0202988_11	1123263.AUKY01000068_gene489	190.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0202988_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0202988_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0202988_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0202988_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0202988_13	K03651	50.1	0.000000000000034	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0202988_13	phrog_7158	46.8	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0202988_13	411901.BACCAC_01116	101.0	3.08e-19	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-0202988_13	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
KOfam	UHGV-0202988_14	K07273	170.9	0	acm; lysozyme	N/A
PHROG	UHGV-0202988_14	phrog_291	137.9	8.5e-41	endolysin	lysis
UniRef90	UHGV-0202988_14	UniRef90_UPI001D0EE7D8	261.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0202988_14	748224.HMPREF9436_00154	244.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0202988_14	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0202988_14	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0202988_14	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_16	phrog_15303	82.2	4.8e-24	N/A	unknown function
structural_annotation	UHGV-0202988_18	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_19	phrog_5765	62.8	3.6e-18	N/A	unknown function
UniRef90	UHGV-0202988_19	UniRef90_UPI001D0EF465	66.6	0.000000000000156	BC1881 family protein	N/A
eggNOG-mapper	UHGV-0202988_19	748727.CLJU_c31430	59.3	0.0000000000146	N/A	N/A
NCBIFam	UHGV-0202988_19	NF033495.1	N/A	N/A	BC1881 family protein	N/A
PHROG	UHGV-0202988_21	phrog_22984	54.4	0.0000000000000017	N/A	unknown function
PHROG	UHGV-0202988_22	phrog_16490	55.4	0.0000000000000014	N/A	unknown function
structural_annotation	UHGV-0202988_23	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202988_24	UniRef90_A0A8F0WD75	85.9	9.82e-18	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0202988_24	1378168.N510_03079	92.0	2.8e-20	N/A	N/A
KOfam	UHGV-0202988_25	K14059	183.0	0	int; integrase	N/A
PHROG	UHGV-0202988_25	phrog_1	168.8	0	integrase	integration and excision
UniRef90	UHGV-0202988_25	UniRef90_A0A367GI93	224.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0202988_25	1507.HMPREF0262_00307	164.0	3.36312e-44	Phage integrase family	N/A
Pfam	UHGV-0202988_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0202988_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0202988_25	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0202988_26	phrog_1373	44.0	0.0000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0202988_26	UniRef90_A0A2A7AM70	177.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0202988_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0202988_26	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0202988_29	K02342	41.5	0.000000000014	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0202988_29	phrog_192	56.1	5.3e-16	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0202988_29	1121333.JMLH01000063_gene1384	83.2	0.00000000000000442	SWIM zinc finger	N/A
COG	UHGV-0202988_29	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-0202988_29	PF00929,PF00533,MF_00157,NF004844,COG0847	N/A	N/A	N/A	N/A