UHGV-0203020 (vOTU-104090)

Viral Genome: UHGV-0203020

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0203020
vOTU ID	vOTU-104090
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781765_a1_ct56407_vs1@Siphoviridae__sp._cttyP1
Associated BioSample	SAMN09781765
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.77 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.77
Jumbo phage	No

Genome content
Genome length (bp)	40,686
GC content	57.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	94%
Average CDS length (bps)	799.13
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0203020_1	K04487	65.2	8.2e-19	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	N/A
PHROG	UHGV-0203020_1	phrog_12787	48.7	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0203020_1	404589.Anae109_1098	57.8	0.00000000983	Aminotransferase, class V	N/A
PADLOC	UHGV-0203020_1	SspA_00001	44.7	0.0000000000037	SspA	SSP
COG	UHGV-0203020_1	COG1104	N/A	N/A	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	N/A
KOfam	UHGV-0203020_4	K04763	138.1	8.39994e-41	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0203020_4	phrog_1	125.2	6.4e-37	integrase	integration and excision
UniRef90	UHGV-0203020_4	UniRef90_UPI0013E0E6C8	112.0	8.19e-25	tyrosine-type recombinase/integrase	N/A
Pfam	UHGV-0203020_4	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0203020_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0203020_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0203020_4	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_5	phrog_435	56.8	4.4e-16	endolysin	lysis
UniRef90	UHGV-0203020_5	UniRef90_A0A8D9PDS4	396.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0203020_5	1226322.HMPREF1545_01953	87.4	7.04e-18	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0203020_5	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0203020_5	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_6	phrog_1129	75.4	4.8e-22	holin	lysis
UniRef90	UHGV-0203020_6	UniRef90_A0A8D9PDD4	182.0	0	Holin	N/A
eggNOG-mapper	UHGV-0203020_6	1226322.HMPREF1545_00069	110.0	1.24e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0203020_6	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0203020_6	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_7	phrog_4105	104.8	4.6e-31	N/A	unknown function
UniRef90	UHGV-0203020_7	UniRef90_A0A8D9UHA9	204.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0203020_7	411460.RUMTOR_01326	142.0	8.18358e-43	N/A	N/A
KOfam	UHGV-0203020_8	K10804	47.9	0.00000000000007	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0203020_8	phrog_11541	98.5	4.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-0203020_8	1175629.AJTG01000006_gene514	137.0	4.15e-34	N/A	N/A
Pfam	UHGV-0203020_8	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
eggNOG-mapper	UHGV-0203020_9	742733.HMPREF9469_05009	47.8	0.00000933	N/A	N/A
structural_annotation	UHGV-0203020_10	PF19266,PF02010,MF_04116,NF032891,TIGR01633,COG3499,COG3506,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_11	phrog_1887	98.3	0	tail protein	tail
COG	UHGV-0203020_11	COG4447	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203020_12	NF033216	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203020_13	PF16450,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_14	phrog_4211	279.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0203020_14	397290.C810_01746	176.0	3.96007e-41	Phage-related minor tail protein	N/A
Pfam	UHGV-0203020_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0203020_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0203020_14	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0203020_14	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_15	phrog_582	40.7	0.000000000045	Arc-like repressor	transcription regulation
Pfam	UHGV-0203020_15	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
structural_annotation	UHGV-0203020_15	PF07878,TIGR04563,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_16	phrog_7168	92.0	5.8e-27	homing endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0203020_16	1280692.AUJL01000004_gene859	86.7	2.08e-16	GIY-YIG type nucleases (URI domain)	N/A
PADLOC	UHGV-0203020_16	HEase_00030	55.1	6.1e-16	homing endonuclease	RM
Pfam	UHGV-0203020_16	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
NCBIFam	UHGV-0203020_16	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0203020_16	PF07453,PF19835,PF04936,TIGR01453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203020_18	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203020_20	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_23	phrog_215	43.0	0.0000000000061	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-0203020_23	44251.PDUR_04730	63.5	0.0000000435	domain, Protein	N/A
Pfam	UHGV-0203020_23	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0203020_23	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203020_23	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203020_24	TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_25	phrog_31538	46.0	0.000000000001	N/A	unknown function
structural_annotation	UHGV-0203020_26	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_28	phrog_4088	41.2	0.000000000016	N/A	unknown function
structural_annotation	UHGV-0203020_28	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_30	phrog_3313	42.0	0.000000000000089	N/A	unknown function
structural_annotation	UHGV-0203020_30	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_31	phrog_374	223.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203020_31	UniRef90_C9KJA8	206.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0203020_31	500635.MITSMUL_03105	206.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
COG	UHGV-0203020_31	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0203020_31	PF17375	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203020_32	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_34	phrog_2739	52.7	3.9e-31	portal protein	head and packaging
structural_annotation	UHGV-0203020_34	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0203020_36	phrog_15503	43.6	0.0000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0203020_36	1308863.U5J9B2_9CAUD	136.0	2.23e-31	N/A	N/A
structural_annotation	UHGV-0203020_36	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0203020_38	K22300	49.9	0.000000000000073	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0203020_38	phrog_8	64.6	2.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203020_38	UniRef90_UPI0018989C77	79.7	3.1e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0203020_38	608506.COB47_1787	60.8	0.000000000456	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0203020_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0203020_38	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0203020_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203020_44	UniRef90_A0A8D9PDK1	84.0	9.6e-19	Anti-repressor	N/A
PHROG	UHGV-0203020_46	phrog_7545	87.4	1.4e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203020_46	UniRef90_A0A7J2R6Z1	96.3	3.73e-21	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0203020_46	94624.Bpet0954	73.6	0.000000000000131	HNH endonuclease	N/A
Pfam	UHGV-0203020_46	PF13392	N/A	N/A	HNH endonuclease	HNH_3
KOfam	UHGV-0203020_47	K00558	43.7	1.5e-17	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0203020_47	phrog_16427	81.3	4.3e-24	DNA methyltransferase	other
UniRef90	UHGV-0203020_47	UniRef90_A0A6N9PX21	204.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0203020_47	657322.FPR_26610	187.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0203020_47	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0203020_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0203020_48	phrog_26446	117.3	7.7e-35	anaerobic ribonucleoside reductase large subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203020_48	UniRef90_A0A2K4ZFK2	182.0	4.2039e-45	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0203020_48	1235793.C809_04341	176.0	4.48416e-44	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0203020_48	oMTase_00004	68.8	3.7e-32	orphan methyltransferase	RM
Pfam	UHGV-0203020_48	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
Pfam	UHGV-0203020_48	PF14890	N/A	N/A	Intein splicing domain	Intein_splicing
COG	UHGV-0203020_48	COG0270	N/A	N/A	DNA-cytosine methylase	N/A