UHGV-0203208 (vOTU-047630)

Viral Genome: UHGV-0203208

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0203208
vOTU ID	vOTU-047630
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252277_a1_ct268541_vs1@Myoviridae__sp._ctwIJ1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.55
Jumbo phage	No

Genome content
Genome length (bp)	39,526
GC content	44.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	94%
Average CDS length (bps)	569.17
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0203208_1	phrog_4433	81.0	1.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0203208_1	445970.ALIPUT_01221	84.7	1.59e-16	DNA-templated transcription, initiation	N/A
COG	UHGV-0203208_1	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
PHROG	UHGV-0203208_2	phrog_2760	225.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203208_2	UniRef90_A0A3A6C308	343.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0203208_2	536233.CLO_0507	211.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-0203208_2	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0203208_2	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0203208_2	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0203208_2	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_3	phrog_674	130.5	8.6e-39	N/A	unknown function
UniRef90	UHGV-0203208_3	UniRef90_UPI00137A8C4D	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-0203208_3	1095750.HMPREF9970_1676	193.0	0	N/A	N/A
Pfam	UHGV-0203208_3	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0203208_3	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_4	phrog_434	165.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203208_4	UniRef90_A0A416VA03	319.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0203208_4	1095750.HMPREF9970_1677	305.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0203208_4	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0203208_4	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0203208_4	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0203208_4	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0203208_9	K07741	188.0	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0203208_9	phrog_63	167.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0203208_9	UniRef90_A0A1C5MD88	346.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-0203208_9	658655.HMPREF0988_02592	293.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0203208_9	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0203208_9	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0203208_9	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0203208_9	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-0203208_10	K07729	49.0	0.00000000000012	K07729; putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0203208_10	476272.RUMHYD_03617	71.6	0.0000000000000151	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0203208_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203208_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0203208_15	K18830	60.5	2.7e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0203208_15	phrog_8	53.2	0.0000000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203208_15	UniRef90_A0A417T1N8	108.0	1.41e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0203208_15	1235793.C809_02627	103.0	1.15e-26	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0203208_15	retron_type_VI_hth_cluster2_1	44.8	0.0000000000008	N/A	Retron
Pfam	UHGV-0203208_15	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0203208_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0203208_15	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_16	phrog_32721	159.5	0	N/A	unknown function
UniRef90	UHGV-0203208_16	UniRef90_U2T9T6	117.0	4.53e-30	Putative lipoprotein	N/A
eggNOG-mapper	UHGV-0203208_16	1476973.JMMB01000007_gene2215	129.0	1.58e-35	N/A	N/A
structural_annotation	UHGV-0203208_16	PF21223,TIGR04209	N/A	N/A	N/A	N/A
KOfam	UHGV-0203208_19	K22300	42.7	0.00000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0203208_19	UniRef90_A0A810PZN0	167.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0203208_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0203208_19	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0203208_20	K06400	210.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0203208_20	phrog_95	238.1	0	integrase	integration and excision
UniRef90	UHGV-0203208_20	UniRef90_A0A1C6CR25	353.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0203208_20	1256908.HMPREF0373_00206	337.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0203208_20	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0203208_20	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0203208_20	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0203208_20	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0203208_20	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_22	phrog_2329	64.5	1.2e-18	N/A	unknown function
UniRef90	UHGV-0203208_22	UniRef90_A0A3R6DLU7	85.1	1.14e-20	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0203208_22	1292035.H476_0264	50.4	0.000000116	N/A	N/A
structural_annotation	UHGV-0203208_22	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203208_25	1226322.HMPREF1545_00079	55.8	0.0000000191	N/A	N/A
eggNOG-mapper	UHGV-0203208_26	476272.RUMHYD_01772	62.0	0.000000000535	N/A	N/A
structural_annotation	UHGV-0203208_26	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_27	phrog_20016	212.9	0	N/A	unknown function
UniRef90	UHGV-0203208_27	UniRef90_A0A285PT46	213.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0203208_27	1226322.HMPREF1545_00077	179.0	0	N/A	N/A
structural_annotation	UHGV-0203208_27	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_28	phrog_16490	146.1	1.79366e-43	N/A	unknown function
eggNOG-mapper	UHGV-0203208_28	1408437.JNJN01000043_gene803	153.0	3.39114e-43	N/A	N/A
PHROG	UHGV-0203208_29	phrog_22984	61.3	1.5e-17	N/A	unknown function
PHROG	UHGV-0203208_30	phrog_21718	77.6	1.6e-22	N/A	unknown function
UniRef90	UHGV-0203208_30	UniRef90_A0A285PT36	126.0	4.82e-34	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-0203208_30	397290.C810_05210	71.2	0.000000000000235	N/A	N/A
PHROG	UHGV-0203208_31	phrog_3754	80.3	2.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0203208_31	476272.RUMHYD_01764	152.0	0	N/A	N/A
UniRef90	UHGV-0203208_33	UniRef90_UPI001D091A6B	357.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0203208_33	1042156.CXIVA_01560	75.1	0.000000000000419	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0203208_33	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-0203208_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0203208_33	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0203208_33	PF03412,PF01471,COG3271	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_34	phrog_443	57.0	5.4e-16	holin	lysis
UniRef90	UHGV-0203208_34	UniRef90_UPI000C75746C	108.0	1.66e-29	holin	N/A
eggNOG-mapper	UHGV-0203208_34	626523.GCWU000342_01012	85.1	8.55e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0203208_34	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0203208_34	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_35	phrog_1863	56.5	1.9e-16	N/A	unknown function
UniRef90	UHGV-0203208_35	UniRef90_UPI001D0865D2	95.5	6.1e-24	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0203208_35	1226322.HMPREF1545_04027	67.8	0.000000000000071	N/A	N/A
PHROG	UHGV-0203208_37	phrog_4722	59.0	2.6e-17	zinc carboxypeptidase	other
eggNOG-mapper	UHGV-0203208_37	1147043.H9A130_9CAUD	70.9	0.000000000925	metallocarboxypeptidase activity	N/A
Pfam	UHGV-0203208_37	PF00246	N/A	N/A	Zinc carboxypeptidase	Peptidase_M14
eggNOG-mapper	UHGV-0203208_39	742733.HMPREF9469_05009	54.7	0.00000158	N/A	N/A
structural_annotation	UHGV-0203208_39	PF16990,NF033147,COG4935	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_41	phrog_13141	134.9	6.3e-40	N/A	unknown function
eggNOG-mapper	UHGV-0203208_41	1256908.HMPREF0373_00465	100.0	1.79e-21	N/A	N/A
Pfam	UHGV-0203208_41	PF09458	N/A	N/A	H-type lectin domain	H_lectin
structural_annotation	UHGV-0203208_41	PF20747,PF09458,NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_42	phrog_538	138.2	6.09999e-41	minor tail protein	tail
UniRef90	UHGV-0203208_42	UniRef90_UPI001E2C8064	205.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0203208_42	742723.HMPREF9477_00895	181.0	0	N/A	N/A
Pfam	UHGV-0203208_42	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0203208_42	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_43	phrog_33	69.2	8.3e-20	distal tail protein Dit	tail
UniRef90	UHGV-0203208_43	UniRef90_A0A414P9H2	153.0	5.51999e-41	Phage tail protein	N/A
eggNOG-mapper	UHGV-0203208_43	742723.HMPREF9477_00896	166.0	0	N/A	N/A
structural_annotation	UHGV-0203208_43	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_44	phrog_6900	244.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0203208_44	UniRef90_A0A0D0SGC8	301.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-0203208_44	1123312.KB904569_gene357	282.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0203208_44	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0203208_44	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_46	phrog_885	71.4	1.1e-20	major tail protein	tail
UniRef90	UHGV-0203208_46	UniRef90_A0A843J9F0	219.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0203208_46	1504822.CCNO01000012_gene492	242.0	0	N/A	N/A
structural_annotation	UHGV-0203208_46	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_47	phrog_17405	40.8	0.000000000033	head protein	head and packaging
structural_annotation	UHGV-0203208_47	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_48	phrog_17977	66.9	2.5e-19	N/A	unknown function
UniRef90	UHGV-0203208_48	UniRef90_UPI00141211AB	124.0	1.11e-34	head-tail adaptor protein	N/A
structural_annotation	UHGV-0203208_48	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_50	phrog_544	186.5	0	major head protein	head and packaging
UniRef90	UHGV-0203208_50	UniRef90_A0A810PZM2	377.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0203208_50	1347392.CCEZ01000005_gene1236	266.0	0	N/A	N/A
structural_annotation	UHGV-0203208_50	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203208_51	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_52	phrog_5	54.8	0.0000000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-0203208_52	UniRef90_A0A7X5E1T2	114.0	1.4e-29	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0203208_52	268407.PWYN_03010	72.4	0.0000000000000416	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0203208_52	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_53	phrog_595	97.7	1.8e-28	head maturation protease	head and packaging
UniRef90	UHGV-0203208_53	UniRef90_A0A285PUG1	228.0	0	Phage head morphogenesis domain	N/A
eggNOG-mapper	UHGV-0203208_53	1280685.AUKC01000004_gene1632	114.0	3.9e-26	Phage Mu protein F like protein	N/A
Pfam	UHGV-0203208_53	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0203208_53	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203208_53	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_54	phrog_64	170.5	0	portal protein	head and packaging
UniRef90	UHGV-0203208_54	UniRef90_A0A856HZB4	513.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0203208_54	673376.F2VHW1_9CAUD	209.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0203208_54	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0203208_54	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0203208_55	K06909	128.8	5.6e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0203208_55	phrog_10250	183.8	0	N/A	unknown function
UniRef90	UHGV-0203208_55	UniRef90_A0A352CU28	553.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0203208_55	411490.ANACAC_00783	521.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0203208_55	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0203208_55	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0203208_55	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0203208_55	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0203208_56	K07474	132.0	7.2e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0203208_56	phrog_2606	341.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-0203208_56	UniRef90_A0A416BKP7	391.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0203208_56	478749.BRYFOR_07604	295.0	0	terminase, small subunit	N/A
Pfam	UHGV-0203208_56	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0203208_56	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0203208_56	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0203208_56	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203208_57	742738.HMPREF9460_02503	48.9	0.00000446	N/A	N/A
structural_annotation	UHGV-0203208_57	PF02001,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203208_58	PF02796,PF06257,COG2771,COG4466	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203208_59	1235798.C817_05064	47.0	0.00000296	N/A	N/A
structural_annotation	UHGV-0203208_59	PF20063,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_60	phrog_9804	129.3	2.5e-38	N/A	unknown function
UniRef90	UHGV-0203208_60	UniRef90_A0A174S716	246.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0203208_60	585394.RHOM_14005	119.0	1.74e-31	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0203208_60	cluster_137185	119.0	5.05e-36	NA	N/A
Pfam	UHGV-0203208_60	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0203208_60	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_61	phrog_11769	176.4	0	N/A	unknown function
UniRef90	UHGV-0203208_61	UniRef90_UPI001301C49F	342.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0203208_61	536232.CLM_1634	180.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0203208_61	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-0203208_61	PF01844	N/A	N/A	HNH endonuclease	HNH
NCBIFam	UHGV-0203208_61	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0203208_61	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_62	phrog_244	85.8	5.6e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0203208_62	887929.HMP0721_1279	99.8	2.98e-25	N/A	N/A
structural_annotation	UHGV-0203208_62	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0203208_65	phrog_27197	57.2	3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0203208_65	1287476.HMPREF1651_07170	51.2	0.00000434	DNA-templated transcription, initiation	N/A
COG	UHGV-0203208_65	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A