UHGV-0203779 (vOTU-061890)

Viral Genome: UHGV-0203779

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0203779
vOTU ID	vOTU-061890
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11031383_a1_ct44176_vs1@linear@Myoviridae__sp._ctxYN1
Associated BioSample	SAMN11031383
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.97 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9664
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.56
Jumbo phage	No

Genome content
Genome length (bp)	36,218
GC content	41.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	92%
Average CDS length (bps)	584.32
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0203779_1	phrog_361	117.7	5.5e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0203779_1	UniRef90_A0A412UTE8	149.0	4.2039e-44	Terminase	N/A
eggNOG-mapper	UHGV-0203779_1	908340.HMPREF9406_2581	236.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0203779_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0203779_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_2	phrog_9	300.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0203779_2	UniRef90_G1VMM3	1127.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0203779_2	908340.HMPREF9406_2580	1130.0	0	Phage Terminase	N/A
Pfam	UHGV-0203779_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0203779_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0203779_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0203779_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_3	phrog_12	173.9	0	portal protein	head and packaging
UniRef90	UHGV-0203779_3	UniRef90_A0A099I918	794.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0203779_3	999413.HMPREF1094_02010	756.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0203779_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0203779_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0203779_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0203779_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0203779_4	K06904	144.6	8.50588e-43	N/A	N/A
PHROG	UHGV-0203779_4	phrog_80	177.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0203779_4	UniRef90_G1VMM5	367.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0203779_4	908340.HMPREF9406_2578	370.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0203779_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0203779_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0203779_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0203779_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_5	phrog_10	200.5	0	major head protein	head and packaging
UniRef90	UHGV-0203779_5	UniRef90_N9WI02	1011.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0203779_5	908340.HMPREF9406_2577	1016.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0203779_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0203779_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0203779_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0203779_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_6	phrog_2550	83.1	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0203779_6	908340.HMPREF9406_2576	177.0	0	N/A	N/A
PHROG	UHGV-0203779_7	phrog_19734	173.6	0	N/A	unknown function
UniRef90	UHGV-0203779_7	UniRef90_A0A3E5GR03	102.0	6.89e-26	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0203779_7	999413.HMPREF1094_02006	241.0	0	N/A	N/A
structural_annotation	UHGV-0203779_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_8	phrog_78	47.4	0.00000000000038	tail terminator	connector
eggNOG-mapper	UHGV-0203779_8	999413.HMPREF1094_02005	209.0	0	N/A	N/A
structural_annotation	UHGV-0203779_8	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203779_9	UniRef90_R6UNR2	255.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0203779_9	908340.HMPREF9406_2573	255.0	0	N/A	N/A
structural_annotation	UHGV-0203779_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_10	phrog_88	110.8	1e-32	major tail protein	tail
UniRef90	UHGV-0203779_10	UniRef90_N9WHZ7	413.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-0203779_10	33035.JPJF01000039_gene278	201.0	0	N/A	N/A
NCBIFam	UHGV-0203779_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0203779_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0203779_12	K20478	45.1	0.00000000000014	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0203779_12	phrog_5218	468.8	0	N/A	unknown function
UniRef90	UHGV-0203779_12	UniRef90_N9V933	1872.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0203779_12	999413.HMPREF1094_02001	1872.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0203779_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0203779_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0203779_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_13	phrog_33	69.2	9.9e-20	distal tail protein Dit	tail
UniRef90	UHGV-0203779_13	UniRef90_A0A3E3AF06	256.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0203779_13	908340.HMPREF9406_2569	488.0	0	phage tail	N/A
NCBIFam	UHGV-0203779_13	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0203779_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0203779_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_14	phrog_1067	341.5	0	minor head protein	head and packaging
UniRef90	UHGV-0203779_14	UniRef90_G1VMN5	1259.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0203779_14	908340.HMPREF9406_2568	1253.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0203779_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0203779_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0203779_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0203779_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203779_15	UniRef90_UPI001E4F503F	72.0	0.0000000000214	collagen-like protein	N/A
eggNOG-mapper	UHGV-0203779_15	908340.HMPREF9406_2567	410.0	0	N/A	N/A
PHROG	UHGV-0203779_16	phrog_4492	130.5	1.1e-38	tail fiber protein	tail
UniRef90	UHGV-0203779_16	UniRef90_A0A0M2NIZ4	84.0	0.0000000000000426	Microcystin dependent protein	N/A
eggNOG-mapper	UHGV-0203779_16	908340.HMPREF9406_2566	616.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0203779_16	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0203779_17	phrog_24451	187.4	0	N/A	unknown function
UniRef90	UHGV-0203779_17	UniRef90_A0A3P6KYQ0	84.7	9.03e-19	N/A	N/A
eggNOG-mapper	UHGV-0203779_17	908340.HMPREF9406_2565	213.0	0	N/A	N/A
Pfam	UHGV-0203779_18	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0203779_18	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_19	phrog_1129	78.1	6.7e-23	holin	lysis
UniRef90	UHGV-0203779_19	UniRef90_A0A099I905	175.0	0	Holin	N/A
eggNOG-mapper	UHGV-0203779_19	552396.HMPREF0863_01649	124.0	3.88e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0203779_19	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0203779_19	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203779_21	UniRef90_A0A318KDR1	262.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-0203779_21	742740.HMPREF9474_01683	114.0	4.49e-26	Glycosyl hydrolases family 25	N/A
COG	UHGV-0203779_21	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
KOfam	UHGV-0203779_22	K18843	76.2	5.7e-22	hicB; antitoxin HicB	N/A
PHROG	UHGV-0203779_22	phrog_497	88.6	9.8e-26	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0203779_22	UniRef90_G1VMP2	273.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0203779_22	908340.HMPREF9406_2561	277.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
Pfam	UHGV-0203779_22	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0203779_22	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0203779_22	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0203779_23	K07339	64.2	1.8e-18	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0203779_23	phrog_353	88.9	2.7e-26	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0203779_23	UniRef90_D0GMY5	99.4	3.59e-26	Toxin-antitoxin system, toxin component, HicA family	N/A
eggNOG-mapper	UHGV-0203779_23	908340.HMPREF9406_2560	138.0	2.29953e-42	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0203779_23	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0203779_23	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0203779_23	PF07927,COG1724	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_24	phrog_374	105.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203779_24	UniRef90_UPI000E4F5132	681.0	0	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203779_24	999413.HMPREF1094_01991	625.0	0	N/A	N/A
Pfam	UHGV-0203779_24	PF00847	N/A	N/A	AP2 domain	AP2
Pfam	UHGV-0203779_24	PF04967	N/A	N/A	HTH DNA binding domain	HTH_10
Pfam	UHGV-0203779_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0203779_25	phrog_25567	179.8	0	N/A	unknown function
KOfam	UHGV-0203779_28	K14059	196.3	0	int; integrase	N/A
PHROG	UHGV-0203779_28	phrog_1	174.7	0	integrase	integration and excision
UniRef90	UHGV-0203779_28	UniRef90_UPI001EDF2E8E	809.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0203779_28	999413.HMPREF1094_02047	897.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0203779_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0203779_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-0203779_30	K18830	61.8	1.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0203779_30	phrog_4	46.1	0.000000000001	transcriptional repressor	transcription regulation
UniRef90	UHGV-0203779_30	UniRef90_N9V9V6	249.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0203779_30	999413.HMPREF1094_02045	249.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0203779_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203779_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0203779_30	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0203779_31	K18830	62.4	8.5e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0203779_31	phrog_2967	53.9	0.0000000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203779_31	UniRef90_UPI000552FDD1	224.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0203779_31	999413.HMPREF1094_02044	172.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0203779_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203779_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0203779_31	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203779_36	PF09202,MF_01819,NF008565,COG3432	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_41	phrog_1374	68.2	7.4e-20	N/A	unknown function
UniRef90	UHGV-0203779_41	UniRef90_A0A2I7QPK8	72.8	0.00000000000000217	Transmembrane fragile-X-F protein	N/A
eggNOG-mapper	UHGV-0203779_41	445972.ANACOL_03351	69.3	0.0000000000000122	N/A	N/A
PHROG	UHGV-0203779_44	phrog_22529	61.8	8.2e-18	N/A	unknown function
UniRef90	UHGV-0203779_44	UniRef90_G1VMJ9	143.0	3.16693e-43	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0203779_44	796942.HMPREF9623_00735	58.5	0.00000000508	3D domain protein	N/A
Pfam	UHGV-0203779_44	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0203779_44	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0203779_44	PF06725,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_46	phrog_1305	115.9	2.8e-34	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203779_46	UniRef90_UPI00067F0F09	132.0	5.02e-35	N/A	N/A
eggNOG-mapper	UHGV-0203779_46	428126.CLOSPI_00812	135.0	2.58e-37	N/A	N/A
structural_annotation	UHGV-0203779_46	COG2250	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_48	phrog_3584	273.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203779_48	UniRef90_A0A4P8IFK4	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-0203779_48	908340.HMPREF9406_2599	486.0	0	N/A	N/A
structural_annotation	UHGV-0203779_48	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0203779_50	K24451	123.0	2.3e-36	zim; modification methylase	N/A
PHROG	UHGV-0203779_50	phrog_67	104.1	1e-30	DNA methyltransferase	other
UniRef90	UHGV-0203779_50	UniRef90_A0A6N2XFY6	604.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0203779_50	908340.HMPREF9406_2596	612.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0203779_50	MTase_II_00139	109.9	4.1e-32	Type II methyltransferase	RM
Pfam	UHGV-0203779_50	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0203779_50	COG0863	N/A	N/A	DNA modification methylase	N/A
KOfam	UHGV-0203779_51	K14440	45.7	7.8e-22	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0203779_51	phrog_62	207.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203779_51	UniRef90_N9V9T3	921.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0203779_51	999413.HMPREF1094_02025	921.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0203779_51	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0203779_51	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0203779_51	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0203779_51	PF06862,MF_01821,NF003426,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203779_53	PF04319,TIGR00686	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_54	phrog_1760	136.2	2.29999e-40	anti-termination protein	transcription regulation
UniRef90	UHGV-0203779_54	UniRef90_UPI001C113DBD	204.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0203779_54	999413.HMPREF1094_02023	424.0	0	ORF6C domain	N/A
Pfam	UHGV-0203779_54	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-0203779_54	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0203779_54	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0203779_54	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0203779_55	phrog_599	43.2	0.000000000007	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0203779_55	UniRef90_A0A412AWF1	71.2	0.00000000000000679	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0203779_55	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0203779_55	PF14354,NF007260,COG4888	N/A	N/A	N/A	N/A
KOfam	UHGV-0203779_56	K04763	171.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0203779_56	phrog_1	149.8	2.10195e-44	integrase	integration and excision
UniRef90	UHGV-0203779_56	UniRef90_A0A6N2XFP5	551.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0203779_56	999413.HMPREF1094_02021	555.0	0	Phage integrase family	N/A
Pfam	UHGV-0203779_56	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0203779_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0203779_56	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0203779_56	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A