UHGV-0203859 (vOTU-081919)

Viral Genome: UHGV-0203859

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0203859
vOTU ID	vOTU-081919
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252253_a1_ct301634_vs1@Siphoviridae__sp._ctNe01
Associated BioSample	SAMN11252253
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.61 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.57
Jumbo phage	No

Genome content
Genome length (bp)	36,390
GC content	53.86%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	94%
Average CDS length (bps)	611.73
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0203859_1	phrog_4433	214.1	0	N/A	unknown function
UniRef90	UHGV-0203859_1	UniRef90_A0A6M5C839	100.0	3.47e-23	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0203859_1	665950.HMPREF1025_01373	112.0	3.3e-27	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0203859_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0203859_2	UniRef90_UPI001C01A488	177.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0203859_2	561177.ANHYDRO_01396	96.3	8.76e-24	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0203859_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0203859_2	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_3	phrog_15768	61.3	1.4e-17	N/A	unknown function
UniRef90	UHGV-0203859_3	UniRef90_A0A1C6J8D5	132.0	5.02e-34	N/A	N/A
eggNOG-mapper	UHGV-0203859_3	1121344.JHZO01000003_gene982	68.6	0.0000000000536	N/A	N/A
Pfam	UHGV-0203859_3	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0203859_3	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0203859_3	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0203859_3	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0203859_4	K03111	146.5	2.60642e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0203859_4	phrog_44	147.1	8.96831e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203859_4	UniRef90_UPI001BB47F69	179.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0203859_4	1226322.HMPREF1545_04080	174.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0203859_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0203859_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0203859_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0203859_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0203859_4	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_5	phrog_1227	271.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203859_5	UniRef90_A0A1Y3RPZ6	459.0	0	N/A	N/A
eggNOG-mapper	UHGV-0203859_5	1158602.I590_00670	183.0	0	N/A	N/A
Pfam	UHGV-0203859_5	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0203859_5	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0203859_5	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_6	phrog_3657	286.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0203859_6	1071073.KI530540_gene3354	213.0	0	N/A	N/A
Pfam	UHGV-0203859_9	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0203859_13	1304866.K413DRAFT_4686	65.9	0.000000000000125	N/A	N/A
KOfam	UHGV-0203859_14	K18830	67.4	2.9e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0203859_14	phrog_8	54.2	0.000000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203859_14	UniRef90_A0A1Y4H5B2	120.0	9.57e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0203859_14	748224.HMPREF9436_01444	117.0	3.04e-32	N/A	N/A
PADLOC	UHGV-0203859_14	retron_type_VI_hth_cluster2_1	47.9	0.0000000000002	N/A	Retron
Pfam	UHGV-0203859_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203859_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0203859_14	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203859_16	1410638.JHXJ01000015_gene2445	176.0	0	N/A	N/A
structural_annotation	UHGV-0203859_16	PF07718,PF02883,NF007398,COG3121	N/A	N/A	N/A	N/A
Pfam	UHGV-0203859_18	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0203859_18	PF00356,TIGR02684,COG3636	N/A	N/A	N/A	N/A
KOfam	UHGV-0203859_19	K06400	374.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0203859_19	phrog_95	360.7	0	integrase	integration and excision
UniRef90	UHGV-0203859_19	UniRef90_A0A1C6JCC5	538.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-0203859_19	1235835.C814_03413	397.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0203859_19	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0203859_19	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0203859_19	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0203859_19	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0203859_19	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203859_24	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_25	phrog_21357	135.2	3.20001e-40	endolysin	lysis
UniRef90	UHGV-0203859_25	UniRef90_D4MVQ6	150.0	1.71995e-41	CHAP domain	N/A
eggNOG-mapper	UHGV-0203859_25	693746.OBV_19030	127.0	2.51e-33	CHAP domain	N/A
Pfam	UHGV-0203859_25	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0203859_25	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0203859_25	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0203859_25	PF01471,PF00877,TIGR02594,TIGR03979,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_26	phrog_881	85.8	2.4e-25	holin	lysis
UniRef90	UHGV-0203859_26	UniRef90_A0A4Q7P349	112.0	4.17e-31	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0203859_26	742740.HMPREF9474_02251	113.0	2.64e-32	Putative phage holin Dp-1	N/A
Pfam	UHGV-0203859_26	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0203859_26	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_27	phrog_937	49.3	0.000000000000093	hemolysin	other
KOfam	UHGV-0203859_29	K01104	43.3	0.000000000003	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	N/A
UniRef90	UHGV-0203859_29	UniRef90_UPI001BF10870	239.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-0203859_29	1121926.AXWO01000001_gene3445	81.6	0.0000000000000187	Tyrosine phosphatase family	N/A
Pfam	UHGV-0203859_29	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-0203859_29	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-0203859_29	PF13350,TIGR01244,COG2365	N/A	N/A	N/A	N/A
KOfam	UHGV-0203859_30	K23455	58.6	5.8e-17	COL8A; collagen type VIII alpha	N/A
PHROG	UHGV-0203859_30	phrog_5073	61.6	1.2e-17	tail fiber protein	tail
eggNOG-mapper	UHGV-0203859_30	1151292.QEW_0665	55.8	0.00000487	N/A	N/A
Pfam	UHGV-0203859_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0203859_31	phrog_15594	67.5	1.7e-19	N/A	unknown function
structural_annotation	UHGV-0203859_31	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_32	phrog_443	56.9	5.4e-16	holin	lysis
UniRef90	UHGV-0203859_32	UniRef90_UPI0009B98E42	99.8	3.14e-26	holin	N/A
eggNOG-mapper	UHGV-0203859_32	1469948.JPNB01000002_gene3855	91.7	7.97e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0203859_32	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0203859_32	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_33	phrog_1863	59.8	2.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0203859_33	1235797.C816_02840	91.3	1.31e-22	N/A	N/A
PHROG	UHGV-0203859_34	phrog_372	214.9	0	tail protein	tail
UniRef90	UHGV-0203859_34	UniRef90_R7FHU8	179.0	1.4013e-45	Tail protein	N/A
eggNOG-mapper	UHGV-0203859_34	1211844.CBLM010000016_gene1479	84.3	0.0000000000000242	N/A	N/A
Pfam	UHGV-0203859_34	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0203859_34	PF05895,MF_00791,NF010681,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_35	phrog_6616	405.8	0	tail protein	tail
UniRef90	UHGV-0203859_35	UniRef90_A0A3D3U8S7	382.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203859_35	33035.JPJF01000043_gene1002	276.0	0	N/A	N/A
PHROG	UHGV-0203859_36	phrog_1194	70.9	1.6e-20	N/A	unknown function
structural_annotation	UHGV-0203859_36	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_37	phrog_1535	118.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0203859_37	411459.RUMOBE_01384	112.0	2.54e-22	phage tail tape measure protein	N/A
COG	UHGV-0203859_37	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0203859_38	phrog_706	116.6	2e-34	N/A	unknown function
UniRef90	UHGV-0203859_38	UniRef90_A0A173TZF2	238.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0203859_38	411459.RUMOBE_01383	194.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0203859_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0203859_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_39	phrog_11299	94.9	7.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0203859_39	33035.JPJF01000106_gene3125	84.0	9.95e-19	N/A	N/A
structural_annotation	UHGV-0203859_39	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_40	phrog_3099	139.3	1.90002e-41	N/A	unknown function
eggNOG-mapper	UHGV-0203859_40	1304866.K413DRAFT_3043	174.0	0	N/A	N/A
structural_annotation	UHGV-0203859_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_41	phrog_3266	61.7	1e-17	tail completion	connector
eggNOG-mapper	UHGV-0203859_41	693746.OBV_18140	171.0	0	N/A	N/A
structural_annotation	UHGV-0203859_41	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_42	phrog_556	54.5	0.0000000000000015	minor head protein	head and packaging
UniRef90	UHGV-0203859_42	UniRef90_UPI001F06267A	78.2	0.00000000000000199	minor capsid protein	N/A
eggNOG-mapper	UHGV-0203859_42	33035.JPJF01000106_gene3128	65.9	0.0000000000204	N/A	N/A
Pfam	UHGV-0203859_42	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0203859_42	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203859_43	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_44	phrog_541	64.0	2.4e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0203859_44	693746.OBV_18110	118.0	7.14e-33	N/A	N/A
PHROG	UHGV-0203859_45	phrog_544	298.4	0	major head protein	head and packaging
UniRef90	UHGV-0203859_45	UniRef90_UPI0019576143	363.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0203859_45	411471.SUBVAR_06940	367.0	0	N/A	N/A
NCBIFam	UHGV-0203859_45	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0203859_45	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_46	phrog_194	86.3	4.2e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-0203859_46	UniRef90_UPI00164D9F94	231.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0203859_46	693746.OBV_18080	179.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0203859_46	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0203859_46	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_47	phrog_3675	111.4	3e-33	N/A	unknown function
UniRef90	UHGV-0203859_47	UniRef90_UPI001C02868E	127.0	2.15e-35	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0203859_47	1235799.C818_04221	129.0	5.91e-37	YjcQ protein	N/A
Pfam	UHGV-0203859_47	PF09639	N/A	N/A	YjcQ protein	YjcQ
PHROG	UHGV-0203859_48	phrog_581	227.2	0	minor head protein	head and packaging
UniRef90	UHGV-0203859_48	UniRef90_UPI0006814CA4	476.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0203859_48	693746.OBV_18050	487.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0203859_48	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0203859_48	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-0203859_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203859_48	PF06152,PF18825	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_49	phrog_8680	214.0	0	N/A	unknown function
UniRef90	UHGV-0203859_49	UniRef90_A0A3R6D7I3	248.0	0	N/A	N/A
eggNOG-mapper	UHGV-0203859_49	411470.RUMGNA_02208	233.0	0	N/A	N/A
Pfam	UHGV-0203859_49	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0203859_49	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0203859_51	phrog_533	196.5	0	portal protein	head and packaging
UniRef90	UHGV-0203859_51	UniRef90_UPI000680A1DB	557.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0203859_51	693746.OBV_18040	388.0	0	N/A	N/A
structural_annotation	UHGV-0203859_51	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203859_53	UniRef90_A0A3F2ZWC3	55.8	0.00000000429	Phage terminase large subunit	N/A
PHROG	UHGV-0203859_54	phrog_15471	149.4	1.4013e-44	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203859_54	UniRef90_A0A357AZP2	192.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0203859_54	1154757.Q5C_03095	138.0	3.88e-38	HNH endonuclease	N/A
Pfam	UHGV-0203859_54	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0203859_54	PF13392,PF10013,COG4068	N/A	N/A	N/A	N/A
KOfam	UHGV-0203859_55	K06909	114.8	9.5e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0203859_55	phrog_10250	151.9	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0203859_55	UniRef90_A0A3D3Y0N9	577.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0203859_55	1226322.HMPREF1545_00043	553.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0203859_55	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0203859_55	PF14890	N/A	N/A	Intein splicing domain	Intein_splicing
NCBIFam	UHGV-0203859_55	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0203859_55	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0203859_55	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203859_56	UniRef90_U2R3C0	132.0	5.37e-37	Nascent polypeptide-associated complex domain protein	N/A
eggNOG-mapper	UHGV-0203859_56	1226322.HMPREF1545_00042	132.0	9.01e-38	N/A	N/A
structural_annotation	UHGV-0203859_56	PF13542	N/A	N/A	N/A	N/A