UHGV-0203960 (vOTU-111249)

Viral Genome: UHGV-0203960

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0203960
vOTU ID	vOTU-111249
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781785_a1_ct65485_vs1@Podoviridae__sp._ctqYg1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.15 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.44
Jumbo phage	No

Genome content
Genome length (bp)	32,075
GC content	58.51%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	91%
Average CDS length (bps)	461.33
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0203960_1	1235797.C816_04177	81.3	0.0000000000000259	alginic acid biosynthetic process	N/A
COG	UHGV-0203960_1	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_4	phrog_10898	261.3	0	N/A	unknown function
UniRef90	UHGV-0203960_4	UniRef90_A0A7U3NJT3	187.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0203960_4	1347368.HG964403_gene4490	59.7	0.00000015	S-layer homology domain	N/A
COG	UHGV-0203960_4	COG4632	N/A	N/A	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	N/A
structural_annotation	UHGV-0203960_4	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203960_5	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_6	phrog_5302	109.3	2.4e-36	tail protein	tail
UniRef90	UHGV-0203960_6	UniRef90_UPI001EDFA717	264.0	0	bacterial Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0203960_6	1203606.HMPREF1526_00261	384.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0203960_6	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0203960_6	PF17936,COG1262	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_8	phrog_1800	98.6	5.7e-29	tail collar fiber protein	tail
eggNOG-mapper	UHGV-0203960_8	382464.ABSI01000010_gene3259	117.0	5.5e-26	tail collar domain protein	N/A
COG	UHGV-0203960_8	COG4675	N/A	N/A	Phage tail collar domain	N/A
UniRef90	UHGV-0203960_10	UniRef90_A0A8J6JAX9	62.0	0.0000000000113	XkdX family protein	N/A
structural_annotation	UHGV-0203960_10	PF20787	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_12	phrog_29609	152.5	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0203960_12	UniRef90_A0A6L9H9C0	179.0	0	PBECR2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203960_12	1160721.RBI_I01634	145.0	3.53127e-43	N/A	N/A
Pfam	UHGV-0203960_12	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
structural_annotation	UHGV-0203960_12	PF18825,COG2929	N/A	N/A	N/A	N/A
KOfam	UHGV-0203960_17	K01447	138.6	5.40004e-41	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0203960_17	phrog_18955	591.2	0	N/A	unknown function
UniRef90	UHGV-0203960_17	UniRef90_UPI00187468B3	497.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0203960_17	742738.HMPREF9460_03968	383.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0203960_17	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0203960_17	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0203960_17	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0203960_17	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0203960_17	PF09992,PF01510,PF18342,NF008758,NF040678,COG5632,COG4632,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_18	phrog_1129	67.0	1.8e-19	holin	lysis
UniRef90	UHGV-0203960_18	UniRef90_A0A416MDZ9	122.0	1.29e-34	Enolase	N/A
eggNOG-mapper	UHGV-0203960_18	665956.HMPREF1032_03272	113.0	6.95e-32	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0203960_18	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0203960_18	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203960_19	97138.C820_00591	77.8	7.24e-18	N/A	N/A
UniRef90	UHGV-0203960_20	UniRef90_A0A1Y3R5J8	78.6	4.65e-18	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203960_20	1384065.JAGS01000001_gene2489	53.5	0.00000000664	N/A	N/A
structural_annotation	UHGV-0203960_20	PF10723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203960_25	445972.ANACOL_01878	81.6	7.85e-18	N/A	N/A
PHROG	UHGV-0203960_27	phrog_16490	203.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0203960_27	397290.C810_01328	147.0	7.80001e-40	N/A	N/A
eggNOG-mapper	UHGV-0203960_28	1408437.JNJN01000043_gene802	127.0	2.56e-36	N/A	N/A
eggNOG-mapper	UHGV-0203960_29	1378168.N510_03079	135.0	4e-36	N/A	N/A
KOfam	UHGV-0203960_30	K14059	170.6	0	int; integrase	N/A
PHROG	UHGV-0203960_30	phrog_1	177.1	0	integrase	integration and excision
UniRef90	UHGV-0203960_30	UniRef90_UPI00067EEE88	352.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0203960_30	1378168.N510_03298	346.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0203960_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0203960_30	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0203960_30	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_31	phrog_31229	113.8	8.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0203960_31	1121344.JHZO01000003_gene1004	137.0	2.77e-40	N/A	N/A
UniRef90	UHGV-0203960_32	UniRef90_UPI001C119CBB	159.0	4.2039e-45	copper amine oxidase N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0203960_32	693746.OBV_27580	130.0	5.96e-35	Copper amine oxidase N-terminal domain	N/A
Pfam	UHGV-0203960_32	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
structural_annotation	UHGV-0203960_32	PF02883,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0203960_34	K22300	44.8	0.0000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0203960_34	UniRef90_A0A3R5Z350	90.5	6.96e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0203960_34	903814.ELI_1263	81.3	5.37e-18	Helix-turn-helix domain	N/A
Pfam	UHGV-0203960_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203960_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0203960_34	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0203960_37	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
eggNOG-mapper	UHGV-0203960_40	742738.HMPREF9460_00848	74.3	8.95e-16	N/A	N/A
structural_annotation	UHGV-0203960_40	PF12728,TIGR01764	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203960_41	UniRef90_A0A1C6J873	65.5	0.00000000132	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
Pfam	UHGV-0203960_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0203960_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0203960_41	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
PHROG	UHGV-0203960_45	phrog_253	74.6	1.4e-21	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203960_45	UniRef90_A0A1C5N4H2	161.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0203960_45	411470.RUMGNA_02192	110.0	1.62e-28	Siphovirus Gp157	N/A
Pfam	UHGV-0203960_45	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0203960_45	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_46	phrog_155	73.6	3.2e-21	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203960_46	UniRef90_A0A6N2RMY2	211.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0203960_46	1134413.ANNK01000120_gene2068	69.7	0.0000000000077	ERF superfamily	N/A
Pfam	UHGV-0203960_46	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0203960_46	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_47	phrog_72	53.6	0.0000000000000036	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203960_47	UniRef90_A0A8D9PDS2	179.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0203960_47	445972.ANACOL_01825	132.0	8.77e-37	N/A	N/A
structural_annotation	UHGV-0203960_47	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_48	phrog_7370	57.7	1.8e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203960_48	UniRef90_A0A498CPV0	127.0	5.05e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0203960_48	445972.ANACOL_01826	98.2	1.84e-25	HNH nucleases	N/A
Pfam	UHGV-0203960_48	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0203960_49	K03111	143.8	1.60028e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0203960_49	phrog_44	150.7	7.00649e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203960_49	UniRef90_A0A174RD30	195.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0203960_49	411467.BACCAP_02389	188.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0203960_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0203960_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0203960_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0203960_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0203960_49	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_50	phrog_15768	59.5	5.8e-17	N/A	unknown function
Pfam	UHGV-0203960_50	PF19808	N/A	N/A	N/A	DUF6291
NCBIFam	UHGV-0203960_50	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0203960_50	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0203960_51	K17680	171.7	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0203960_51	phrog_239	169.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203960_51	UniRef90_A0A1C7FRV3	445.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0203960_51	1378168.N510_01441	418.0	0	N/A	N/A
Pfam	UHGV-0203960_51	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0203960_51	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0203960_51	PF03796,MF_04154,NF006606,COG0467	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203960_53	UniRef90_A0A7X8IB41	103.0	3.73e-26	RusA family crossover junction endodeoxyribonuclease	N/A
structural_annotation	UHGV-0203960_53	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_58	phrog_3136	130.3	5.8e-39	N/A	unknown function
UniRef90	UHGV-0203960_58	UniRef90_A0A3D0HBD2	169.0	0	ASCH domain-containing protein	N/A
Pfam	UHGV-0203960_58	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0203960_58	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0203960_58	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_59	phrog_4433	161.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0203960_59	394503.Ccel_3068	131.0	1.22e-35	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0203960_59	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0203960_59	NF007410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203960_61	UniRef90_A0A1Q6V1V0	59.7	0.00000000075	N/A	N/A
structural_annotation	UHGV-0203960_61	PF20037	N/A	N/A	N/A	N/A
PHROG	UHGV-0203960_63	phrog_9958	133.5	1e-39	N/A	unknown function
UniRef90	UHGV-0203960_63	UniRef90_R6PU86	99.4	1.65e-22	Mucin-5AC	N/A
eggNOG-mapper	UHGV-0203960_63	1203606.HMPREF1526_01871	91.3	3.65e-20	cellulase activity	N/A
COG	UHGV-0203960_63	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0203960_63	PF19789	N/A	N/A	N/A	N/A