UHGV-0203970 (vOTU-165767)

Viral Genome: UHGV-0203970

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0203970
vOTU ID	vOTU-165767
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252292_a1_ct56122_vs1@Myoviridae__sp._ctdRX1
Associated BioSample	SAMN11252292
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.1 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.66
Jumbo phage	No

Genome content
Genome length (bp)	24,481
GC content	52.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	96%
Average CDS length (bps)	694.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0203970_1	UniRef90_A0A316R9D9	1047.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0203970_1	641107.CDLVIII_4353	58.5	0.000000463	N/A	N/A
PHROG	UHGV-0203970_2	phrog_13289	170.3	0	tail protein	tail
UniRef90	UHGV-0203970_2	UniRef90_A0A316RM27	920.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0203970_2	1235798.C817_04594	115.0	2.73e-24	Prophage endopeptidase tail	N/A
Pfam	UHGV-0203970_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0203970_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0203970_2	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0203970_3	phrog_33	74.3	2.4e-21	distal tail protein Dit	tail
UniRef90	UHGV-0203970_3	UniRef90_UPI0019689066	101.0	2.23e-22	phage tail protein	N/A
eggNOG-mapper	UHGV-0203970_3	1232452.BAIB02000007_gene1615	141.0	1.4e-38	phage tail	N/A
Pfam	UHGV-0203970_3	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0203970_3	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0203970_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0203970_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_4	phrog_1533	525.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0203970_4	UniRef90_A0A316R7C3	1082.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0203970_4	35241.Q9AYV8_BPTU2	387.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0203970_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0203970_4	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
PHROG	UHGV-0203970_5	phrog_25901	72.8	6.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0203970_5	411468.CLOSCI_01498	62.8	0.000000000264	N/A	N/A
PHROG	UHGV-0203970_6	phrog_13494	59.5	4.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0203970_6	742741.HMPREF9475_00431	53.9	0.0000000899	N/A	N/A
PHROG	UHGV-0203970_7	phrog_88	139.9	1.19993e-41	major tail protein	tail
UniRef90	UHGV-0203970_7	UniRef90_A0A316RAJ2	399.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0203970_7	411459.RUMOBE_01728	229.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0203970_7	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0203970_7	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203970_7	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_8	phrog_78	51.4	0.00000000000002	tail terminator	connector
eggNOG-mapper	UHGV-0203970_8	411468.CLOSCI_01495	95.1	1.44e-23	N/A	N/A
structural_annotation	UHGV-0203970_8	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203970_9	UniRef90_A0A174MCG9	90.1	2.71e-20	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0203970_9	411459.RUMOBE_01730	90.1	4.55e-21	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0203970_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0203970_9	PF04883,TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203970_10	UniRef90_A0A316R8D9	220.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0203970_10	195103.CPF_1582	70.5	0.0000000000000289	Phage head-tail adaptor	N/A
Pfam	UHGV-0203970_10	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0203970_10	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0203970_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_11	phrog_40	40.2	0.00000000004	head-tail adaptor Ad1	connector
UniRef90	UHGV-0203970_11	UniRef90_A0A316R9F5	169.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0203970_11	411459.RUMOBE_01732	77.8	1.27e-17	N/A	N/A
Pfam	UHGV-0203970_11	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0203970_11	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0203970_11	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_12	phrog_10	195.5	0	major head protein	head and packaging
UniRef90	UHGV-0203970_12	UniRef90_A0A316RM35	724.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0203970_12	411459.RUMOBE_01733	310.0	0	phage phi-C31 gp36 major capsid-like protein	N/A
Pfam	UHGV-0203970_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0203970_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0203970_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0203970_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0203970_13	K01358	102.3	6.8e-30	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0203970_13	phrog_94	175.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0203970_13	UniRef90_A0A316R8I3	494.0	0	Clp protease	N/A
eggNOG-mapper	UHGV-0203970_13	742741.HMPREF9475_00424	199.0	0	Clp protease	N/A
Pfam	UHGV-0203970_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0203970_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0203970_13	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_14	phrog_12	302.1	0	portal protein	head and packaging
UniRef90	UHGV-0203970_14	UniRef90_A0A316R7D3	849.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0203970_14	411459.RUMOBE_01735	446.0	0	N/A	N/A
Pfam	UHGV-0203970_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0203970_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0203970_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0203970_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_15	phrog_9	363.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0203970_15	UniRef90_A0A316R7M0	1150.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0203970_15	411459.RUMOBE_01737	708.0	0	N/A	N/A
Pfam	UHGV-0203970_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0203970_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0203970_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0203970_15	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_16	phrog_83	67.3	2.6e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0203970_16	UniRef90_A0A316RD76	314.0	0	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0203970_16	411468.CLOSCI_01487	125.0	4.14e-34	Phage terminase, small subunit	N/A
Pfam	UHGV-0203970_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0203970_16	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0203970_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_17	phrog_144	92.0	5.8e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203970_17	UniRef90_A0A844FGQ3	109.0	1.36e-27	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0203970_17	411459.RUMOBE_01739	111.0	1.81e-29	N/A	N/A
PHROG	UHGV-0203970_18	phrog_1558	53.3	1.7e-20	N/A	unknown function
UniRef90	UHGV-0203970_18	UniRef90_A0A316RAK3	207.0	0	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203970_18	411459.RUMOBE_01740	57.4	0.0000000136	N/A	N/A
Pfam	UHGV-0203970_18	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0203970_18	PF06530,NF008895,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_22	phrog_15609	343.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0203970_22	1514668.JOOA01000001_gene225	86.7	2.01e-16	N/A	N/A
structural_annotation	UHGV-0203970_22	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_23	phrog_8470	477.0	0	N/A	unknown function
UniRef90	UHGV-0203970_23	UniRef90_UPI001C0AE9DA	174.0	3.36312e-44	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0203970_23	1117108.PAALTS15_13637	145.0	1.18e-34	PcfJ-like protein	N/A
Pfam	UHGV-0203970_23	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0203970_23	PF14284	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203970_24	UniRef90_UPI001B3C69A2	61.6	0.00000000063	Cas9 inhibitor AcrIIA9 family protein	N/A
Pfam	UHGV-0203970_24	PF14058	N/A	N/A	PcfK-like protein	PcfK
PHROG	UHGV-0203970_26	phrog_1533	80.0	1.4e-23	tail length tape measure protein	tail
UniRef90	UHGV-0203970_26	UniRef90_UPI001D105E64	64.7	0.0000000000292	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0203970_26	35241.Q9AYV8_BPTU2	76.3	0.0000000000000174	peptidoglycan catabolic process	N/A
NCBIFam	UHGV-0203970_26	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
PHROG	UHGV-0203970_27	phrog_24518	40.9	0.00000000002	N/A	unknown function
PHROG	UHGV-0203970_29	phrog_190	110.7	1.1e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203970_29	UniRef90_R6ISF1	254.0	0	N/A	N/A
eggNOG-mapper	UHGV-0203970_29	1236514.BAKL01000051_gene3708	90.1	1.52e-21	N/A	N/A
Pfam	UHGV-0203970_29	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0203970_29	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_30	phrog_34937	218.5	0	N/A	unknown function
PHROG	UHGV-0203970_31	phrog_3584	159.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0203970_31	642492.Clole_0725	124.0	1.04e-31	N/A	N/A
structural_annotation	UHGV-0203970_31	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0203970_33	phrog_33952	211.5	0	N/A	unknown function
PHROG	UHGV-0203970_34	phrog_668	47.7	0.000000000000063	HTH DNA binding protein	DNA, RNA and nucleotide metabolism