UHGV-0204079 (vOTU-120463)

Viral Genome: UHGV-0204079

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0204079
vOTU ID	vOTU-120463
Representative Genome?	Yes
Source	CHVD
Original genome ID	SRS019638_a1_ct62088_vs1@Siphoviridae__sp._ctXSW1
Associated BioSample	SAMN00040856
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.94 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9737
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.55
Jumbo phage	No

Genome content
Genome length (bp)	33,606
GC content	54.53%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	91%
Average CDS length (bps)	765.60
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0204079_1	K14059	145.2	7.10458e-43	int; integrase	N/A
PHROG	UHGV-0204079_1	phrog_1	140.9	9.99967e-42	integrase	integration and excision
UniRef90	UHGV-0204079_1	UniRef90_A0A3A6E8V2	720.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0204079_1	693746.OBV_25530	275.0	0	Phage integrase family	N/A
Pfam	UHGV-0204079_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0204079_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0204079_1	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_2	phrog_419	74.9	1.1e-23	N/A	unknown function
UniRef90	UHGV-0204079_2	UniRef90_UPI001CBFD05B	102.0	1.91e-27	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0204079_2	1401067.HMPREF0872_03940	94.7	3.72e-25	N/A	N/A
structural_annotation	UHGV-0204079_2	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_3	phrog_1914	72.5	2.3e-21	N/A	unknown function
UniRef90	UHGV-0204079_3	UniRef90_UPI00196848AF	402.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0204079_3	642492.Clole_0781	140.0	2.99e-39	N/A	N/A
Pfam	UHGV-0204079_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0204079_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0204079_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0204079_4	K22300	47.1	0.00000000000033	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0204079_4	phrog_8	65.9	8.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204079_4	UniRef90_UPI001ABCA527	318.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204079_4	1235790.C805_01005	106.0	1.8e-25	Helix-turn-helix domain protein	N/A
Pfam	UHGV-0204079_4	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0204079_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0204079_5	K07741	145.8	5.395e-43	antB; anti-repressor protein	N/A
PHROG	UHGV-0204079_5	phrog_63	114.5	1.1e-33	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0204079_5	UniRef90_A0A1C5P786	346.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-0204079_5	1230342.CTM_17202	288.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0204079_5	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0204079_5	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0204079_5	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0204079_5	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_6	phrog_4583	50.6	0.000000000000021	transcriptional repressor	transcription regulation
UniRef90	UHGV-0204079_6	UniRef90_A0A3A6ECM7	183.0	0	XRE family transcriptional regulator	N/A
Pfam	UHGV-0204079_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0204079_6	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204079_8	UniRef90_UPI001967278A	215.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204079_8	97139.C824_03650	54.7	0.000000111	N/A	N/A
Pfam	UHGV-0204079_8	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0204079_8	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0204079_8	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_9	phrog_1733	65.6	4.9e-19	N/A	unknown function
UniRef90	UHGV-0204079_9	UniRef90_UPI00196846D9	1176.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-0204079_9	665956.HMPREF1032_03597	844.0	0	DNA binding	N/A
COG	UHGV-0204079_9	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0204079_9	PF03677	N/A	N/A	N/A	N/A
KOfam	UHGV-0204079_10	K03546	64.2	1.6e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0204079_10	phrog_1499	476.9	0	N/A	unknown function
UniRef90	UHGV-0204079_10	UniRef90_UPI001967B614	778.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0204079_10	1235798.C817_04766	487.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0204079_10	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0204079_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0204079_10	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_11	phrog_124	230.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204079_11	UniRef90_UPI00196823E0	739.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0204079_11	645991.Sgly_0321	373.0	0	AAA domain	N/A
Pfam	UHGV-0204079_11	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0204079_11	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_12	phrog_2698	195.3	0	N/A	unknown function
UniRef90	UHGV-0204079_12	UniRef90_UPI001966DD81	337.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204079_12	394503.Ccel_3308	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0204079_12	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0204079_13	K17677	339.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0204079_13	phrog_16	268.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204079_13	UniRef90_UPI0019672759	1047.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0204079_13	411462.DORLON_00809	769.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0204079_13	mREase_IV_00005	145.7	4.1058e-43	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0204079_13	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0204079_13	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0204079_13	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0204079_13	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0204079_14	K07505	396.6	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0204079_14	phrog_2597	1119.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204079_14	UniRef90_UPI001967B211	1540.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0204079_14	552396.HMPREF0863_02435	910.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0204079_14	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0204079_14	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0204079_14	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0204079_14	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0204079_15	K01160	53.6	0.0000000000000059	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0204079_15	phrog_140	82.5	5.7e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204079_15	UniRef90_UPI001967BB42	278.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0204079_15	742738.HMPREF9460_01358	166.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0204079_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0204079_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0204079_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_17	phrog_38832	77.5	8.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0204079_17	665956.HMPREF1032_03087	160.0	0	N/A	N/A
UniRef90	UHGV-0204079_19	UniRef90_UPI0019673783	72.4	0.0000000000000905	helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-0204079_20	phrog_36	58.8	9.3e-17	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0204079_20	PF07374,TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_22	phrog_2412	94.7	8.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0204079_22	742738.HMPREF9460_02504	129.0	6.94e-37	N/A	N/A
KOfam	UHGV-0204079_23	K06909	84.4	1.5e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0204079_23	phrog_2	114.9	1e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0204079_23	UniRef90_UPI0019684892	855.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0204079_23	1449050.JNLE01000003_gene3895	384.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0204079_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0204079_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0204079_23	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_24	phrog_533	271.4	0	portal protein	head and packaging
UniRef90	UHGV-0204079_24	UniRef90_A0A7G9WF85	456.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0204079_24	718252.FP2_06700	471.0	0	N/A	N/A
structural_annotation	UHGV-0204079_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0204079_25	K11044	51.3	0.000000000000006	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0204079_25	phrog_581	337.6	0	minor head protein	head and packaging
UniRef90	UHGV-0204079_25	UniRef90_UPI0019688325	1115.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0204079_25	718252.FP2_06690	484.0	0	N/A	N/A
Pfam	UHGV-0204079_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0204079_25	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0204079_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204079_25	PF06152,PF03496,MF_04139,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_27	phrog_194	112.6	3.7e-33	head scaffolding protein	head and packaging
UniRef90	UHGV-0204079_27	UniRef90_A0A410Q086	128.0	3.45e-34	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-0204079_27	411471.SUBVAR_06994	116.0	2.54e-30	Phage minor structural protein GP20	N/A
Pfam	UHGV-0204079_27	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0204079_27	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_28	phrog_267	88.1	9.3e-26	major head protein	head and packaging
UniRef90	UHGV-0204079_28	UniRef90_A0A4P8IA69	353.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-0204079_28	748224.HMPREF9436_03335	423.0	0	N/A	N/A
structural_annotation	UHGV-0204079_28	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_29	phrog_541	64.4	1.6e-18	head-tail adaptor	connector
Pfam	UHGV-0204079_30	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0204079_30	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_31	phrog_556	107.9	5.4e-32	minor head protein	head and packaging
UniRef90	UHGV-0204079_31	UniRef90_UPI001958E7C1	130.0	2.86e-36	minor capsid protein	N/A
eggNOG-mapper	UHGV-0204079_31	665956.HMPREF1032_03062	134.0	8.58e-39	Minor capsid protein	N/A
Pfam	UHGV-0204079_31	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0204079_31	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_32	phrog_3266	76.9	2.1e-22	tail completion	connector
eggNOG-mapper	UHGV-0204079_32	525255.HMPREF0077_0380	59.7	0.00000000221	N/A	N/A
structural_annotation	UHGV-0204079_32	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_33	phrog_3099	62.0	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0204079_33	665956.HMPREF1032_03060	293.0	0	N/A	N/A
structural_annotation	UHGV-0204079_33	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_34	phrog_11299	81.6	8.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0204079_34	665956.HMPREF1032_03059	177.0	0	N/A	N/A
structural_annotation	UHGV-0204079_34	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_35	phrog_706	92.9	3.4e-27	N/A	unknown function
UniRef90	UHGV-0204079_35	UniRef90_UPI0013141117	221.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0204079_35	665956.HMPREF1032_03058	282.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0204079_35	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0204079_35	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_36	phrog_1535	116.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0204079_36	UniRef90_A0A1C6JAZ8	145.0	3.18e-32	Phage-related protein	N/A
eggNOG-mapper	UHGV-0204079_36	665956.HMPREF1032_03057	593.0	0	tape measure	N/A
COG	UHGV-0204079_36	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_37	phrog_1194	62.8	4.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0204079_37	411902.CLOBOL_00125	105.0	1.57e-27	N/A	N/A
structural_annotation	UHGV-0204079_37	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_38	phrog_32744	161.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0204079_38	411902.CLOBOL_00124	248.0	0	N/A	N/A
structural_annotation	UHGV-0204079_38	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0204079_39	phrog_18725	59.4	5.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0204079_39	693746.OBV_18220	70.9	0.000000000000166	N/A	N/A
eggNOG-mapper	UHGV-0204079_40	665956.HMPREF1032_03918	104.0	5.49e-25	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A