UHGV-0204093 (vOTU-047738)

Viral Genome: UHGV-0204093

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0204093
vOTU ID	vOTU-047738
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11893757_a1_ct1210@circular@Siphoviridae__sp._ctvbi210
Associated BioSample	SAMN11893757
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.87
Jumbo phage	No

Genome content
Genome length (bp)	37,152
GC content	35.78%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	92%
Average CDS length (bps)	654.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0204093_1	K22299	50.9	0.00000000000003	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0204093_1	phrog_2967	61.6	1.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204093_1	UniRef90_UPI000E4E831D	231.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204093_1	562982.HMPREF0432_00732	82.4	4.6e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0204093_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0204093_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0204093_2	phrog_87	84.3	1e-24	metallo-protease	other
UniRef90	UHGV-0204093_2	UniRef90_UPI001C0108EA	306.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0204093_2	1304866.K413DRAFT_0835	146.0	9.65495e-43	Zn peptidase	N/A
Pfam	UHGV-0204093_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0204093_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0204093_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0204093_3	K06400	278.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0204093_3	phrog_95	306.7	0	integrase	integration and excision
UniRef90	UHGV-0204093_3	UniRef90_A0A413S025	1036.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0204093_3	697281.Mahau_2563	470.0	0	resolvase	N/A
Pfam	UHGV-0204093_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0204093_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0204093_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0204093_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0204093_3	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0204093_4	K17733	141.5	5.29971e-42	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0204093_4	phrog_2649	135.4	4.6e-40	endolysin	lysis
UniRef90	UHGV-0204093_4	UniRef90_A0A413R469	430.0	0	M15 family peptidase	N/A
eggNOG-mapper	UHGV-0204093_4	397290.C810_03258	172.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0204093_4	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0204093_4	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0204093_4	PF02557,MF_01924,NF000472,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_5	phrog_443	59.4	8.7e-17	holin	lysis
UniRef90	UHGV-0204093_5	UniRef90_A0A1I0HNR6	83.6	8.79e-20	Holin, r1t family	N/A
eggNOG-mapper	UHGV-0204093_5	397288.C806_00114	81.3	1.21e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0204093_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0204093_5	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_6	phrog_4105	94.5	7.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0204093_6	1121105.ATXL01000027_gene760	79.3	1.85e-17	N/A	N/A
PHROG	UHGV-0204093_7	phrog_3971	51.5	0.0000000000000091	N/A	unknown function
UniRef90	UHGV-0204093_9	UniRef90_UPI001314AFC7	155.0	6.16571e-44	collagen-like protein	N/A
eggNOG-mapper	UHGV-0204093_9	742733.HMPREF9469_01804	62.0	0.00000000134	N/A	N/A
PHROG	UHGV-0204093_10	phrog_17180	59.0	7.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0204093_10	457424.BFAG_02437	55.1	0.0000000603	N/A	N/A
PHROG	UHGV-0204093_12	phrog_1194	63.5	2.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0204093_12	1235790.C805_00088	94.4	7.48e-23	N/A	N/A
Pfam	UHGV-0204093_12	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0204093_12	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_13	phrog_1535	261.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0204093_13	UniRef90_UPI0003F4F1A1	85.5	0.000000000000405	membrane protein	N/A
eggNOG-mapper	UHGV-0204093_13	1226322.HMPREF1545_00059	101.0	7.42e-19	tape measure	N/A
COG	UHGV-0204093_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0204093_13	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_14	phrog_706	131.5	5e-39	N/A	unknown function
UniRef90	UHGV-0204093_14	UniRef90_A0A1C5M8I2	188.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0204093_14	1449050.JNLE01000003_gene3882	173.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0204093_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0204093_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_15	phrog_11299	131.4	4.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0204093_15	1449050.JNLE01000003_gene3883	114.0	1.25e-30	N/A	N/A
structural_annotation	UHGV-0204093_15	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_16	phrog_3099	150.8	5.60519e-45	N/A	unknown function
eggNOG-mapper	UHGV-0204093_16	1160721.RBI_II00532	205.0	0	N/A	N/A
structural_annotation	UHGV-0204093_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_17	phrog_3266	115.3	3.1e-34	tail completion	connector
eggNOG-mapper	UHGV-0204093_17	1304866.K413DRAFT_3042	147.0	2.12997e-43	N/A	N/A
structural_annotation	UHGV-0204093_17	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_18	phrog_556	123.5	7e-37	minor head protein	head and packaging
UniRef90	UHGV-0204093_18	UniRef90_UPI000691B8FF	164.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0204093_18	1449050.JNLE01000003_gene3886	164.0	0	N/A	N/A
Pfam	UHGV-0204093_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0204093_18	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_19	phrog_3366	41.6	0.0000000000073	N/A	unknown function
eggNOG-mapper	UHGV-0204093_19	1304866.K413DRAFT_3040	50.1	0.00000567	N/A	N/A
PHROG	UHGV-0204093_20	phrog_541	89.5	2.8e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0204093_20	1449050.JNLE01000003_gene3888	82.0	1.82e-18	N/A	N/A
PHROG	UHGV-0204093_21	phrog_10	166.8	0	major head protein	head and packaging
UniRef90	UHGV-0204093_21	UniRef90_A0A416VUP1	677.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0204093_21	1449050.JNLE01000003_gene3889	629.0	0	Phage capsid family	N/A
Pfam	UHGV-0204093_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0204093_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0204093_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0204093_21	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_22	phrog_194	82.5	6.3e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0204093_22	UniRef90_UPI000E449396	167.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0204093_22	411902.CLOBOL_00135	139.0	2.92e-39	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0204093_22	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0204093_22	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_23	phrog_3675	113.7	6.4e-34	N/A	unknown function
UniRef90	UHGV-0204093_23	UniRef90_UPI001C02868E	142.0	3.90962e-42	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0204093_23	1235799.C818_04221	125.0	3.1e-36	YjcQ protein	N/A
Pfam	UHGV-0204093_23	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0204093_23	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_25	phrog_581	335.1	0	minor head protein	head and packaging
UniRef90	UHGV-0204093_25	UniRef90_A0A396Q8K1	470.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0204093_25	1449050.JNLE01000003_gene3892	324.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0204093_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0204093_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204093_25	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_26	phrog_533	375.1	0	portal protein	head and packaging
UniRef90	UHGV-0204093_26	UniRef90_A0A416VUR7	782.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0204093_26	411902.CLOBOL_00138	547.0	0	N/A	N/A
Pfam	UHGV-0204093_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0204093_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0204093_27	K06909	100.9	1.2e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0204093_27	phrog_2	106.8	3.1e-31	terminase large subunit	head and packaging
UniRef90	UHGV-0204093_27	UniRef90_A0A416VUT0	836.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0204093_27	1449050.JNLE01000003_gene3895	734.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0204093_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0204093_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0204093_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0204093_27	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0204093_28	K07474	111.7	1.1e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0204093_28	phrog_2606	294.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0204093_28	UniRef90_A0A416VUY5	378.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0204093_28	411461.DORFOR_01162	243.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0204093_28	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0204093_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0204093_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0204093_29	phrog_9479	178.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0204093_29	1514668.JOOA01000002_gene2680	73.6	0.00000000000000611	N/A	N/A
structural_annotation	UHGV-0204093_29	PF15529	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204093_30	PF06167,NF041907	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_31	phrog_8680	251.0	0	N/A	unknown function
UniRef90	UHGV-0204093_31	UniRef90_A0A413TTC4	276.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204093_31	411470.RUMGNA_02208	264.0	0	N/A	N/A
Pfam	UHGV-0204093_31	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0204093_31	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_32	phrog_36	65.1	1.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204093_32	UniRef90_A0A7C6D6F2	85.1	1.74e-18	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0204093_32	1111454.HMPREF1250_0009	68.9	0.000000000000582	N/A	N/A
structural_annotation	UHGV-0204093_32	PF07374,MF_00674,NF005248,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204093_35	411461.DORFOR_01156	182.0	0	N/A	N/A
structural_annotation	UHGV-0204093_35	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_36	phrog_8684	109.3	2.4e-32	N/A	unknown function
UniRef90	UHGV-0204093_36	UniRef90_A0A416AFR1	108.0	1.79e-27	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0204093_36	742735.HMPREF9467_00920	82.4	4.97e-18	YopX protein	N/A
Pfam	UHGV-0204093_36	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0204093_36	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0204093_36	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_37	phrog_21026	58.8	9.2e-17	N/A	unknown function
PHROG	UHGV-0204093_38	phrog_424	98.9	4.8e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0204093_38	UniRef90_A0A2H4JC51	577.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0204093_38	411461.DORFOR_01142	603.0	0	N/A	N/A
COG	UHGV-0204093_38	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0204093_38	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_39	phrog_17690	107.2	7.9e-32	N/A	unknown function
UniRef90	UHGV-0204093_39	UniRef90_A0A6L5XWF4	95.1	1.51e-22	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0204093_39	33035.JPJF01000123_gene2433	110.0	3.41e-29	N/A	N/A
PHROG	UHGV-0204093_42	phrog_2562	126.8	1.9e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204093_42	UniRef90_A0A413RCW1	506.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204093_42	537013.CLOSTMETH_01717	162.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0204093_42	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0204093_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0204093_42	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_43	phrog_244	87.4	1.8e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0204093_43	33035.JPJF01000122_gene2460	148.0	1.12104e-44	N/A	N/A
structural_annotation	UHGV-0204093_43	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_44	phrog_2113	42.8	0.0000000000058	N/A	unknown function
structural_annotation	UHGV-0204093_44	PF21715,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-0204093_45	K07455	207.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0204093_45	phrog_148	221.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204093_45	UniRef90_A0A413RCV3	564.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0204093_45	1095750.HMPREF9970_1675	387.0	0	RecT family	N/A
Pfam	UHGV-0204093_45	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0204093_45	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0204093_45	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0204093_45	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_46	phrog_674	172.8	0	N/A	unknown function
UniRef90	UHGV-0204093_46	UniRef90_A0A413RZX0	463.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204093_46	742740.HMPREF9474_03487	159.0	5.46506e-44	N/A	N/A
Pfam	UHGV-0204093_46	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0204093_46	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0204093_47	phrog_434	152.3	2.8026e-45	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204093_47	UniRef90_K1SBE3	286.0	0	Phage-type endonuclease family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0204093_47	1095750.HMPREF9970_1677	242.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0204093_47	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0204093_47	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0204093_47	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0204093_47	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204093_50	411461.DORFOR_00023	72.8	2.46e-16	N/A	N/A
KOfam	UHGV-0204093_51	K22300	42.3	0.000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0204093_51	phrog_3	41.1	0.000000000062	transcriptional repressor	transcription regulation
UniRef90	UHGV-0204093_51	UniRef90_UPI001A9A3F30	137.0	2.76995e-41	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0204093_51	1321782.HMPREF1986_02244	81.3	1.8e-19	Helix-turn-helix domain	N/A
Pfam	UHGV-0204093_51	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0204093_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0204093_51	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204093_52	UniRef90_A0A415L439	80.9	2.3e-19	Protein phosphatase	N/A
eggNOG-mapper	UHGV-0204093_52	411902.CLOBOL_03859	53.9	0.00000000229	N/A	N/A
AcrCatalog	UHGV-0204093_52	cluster_13845	56.2	0.00000000000000843	NA	N/A