UHGV-0204266 (vOTU-086439)

Viral Genome: UHGV-0204266

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0204266
vOTU ID	vOTU-086439
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252264_a1_ct308880_vs1@Siphoviridae__sp._ctk3b1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.62 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.98
Jumbo phage	No

Genome content
Genome length (bp)	36,058
GC content	58.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	90%
Average CDS length (bps)	581.20
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0204266_1	UniRef90_A0A8F0WD75	78.6	0.00000000000000341	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0204266_1	1408437.JNJN01000043_gene801	80.1	1.59e-16	N/A	N/A
structural_annotation	UHGV-0204266_2	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_4	phrog_22984	50.6	0.000000000000035	N/A	unknown function
structural_annotation	UHGV-0204266_5	PF20477,NF033819	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204266_6	UniRef90_A0A8D9PDT6	63.2	0.0000000000388	Transcriptional regulatory protein	N/A
Pfam	UHGV-0204266_6	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0204266_6	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-0204266_7	phrog_1129	67.7	1.3e-19	holin	lysis
UniRef90	UHGV-0204266_7	UniRef90_A0A6A8VHY5	124.0	1.71e-35	Enolase	N/A
eggNOG-mapper	UHGV-0204266_7	1226322.HMPREF1545_00069	127.0	1.78e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0204266_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0204266_7	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_8	phrog_1863	54.2	9.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0204266_8	1226322.HMPREF1545_04027	71.6	0.00000000000000193	N/A	N/A
PHROG	UHGV-0204266_9	phrog_14030	168.0	0	N/A	unknown function
UniRef90	UHGV-0204266_9	UniRef90_A0A173XSJ1	199.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0204266_9	1121115.AXVN01000051_gene809	192.0	0	NLP P60 protein	N/A
Pfam	UHGV-0204266_9	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0204266_9	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0204266_9	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0204266_9	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_10	phrog_27545	83.5	2.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0204266_10	1122971.BAME01000151_gene6566	94.4	5.68e-22	N/A	N/A
PHROG	UHGV-0204266_13	phrog_19111	40.8	0.0000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0204266_13	742733.HMPREF9469_05009	62.4	0.0000000114	N/A	N/A
structural_annotation	UHGV-0204266_13	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_14	phrog_13589	168.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0204266_14	742733.HMPREF9469_05009	230.0	0	N/A	N/A
structural_annotation	UHGV-0204266_16	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204266_17	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_18	phrog_26795	116.7	1.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0204266_18	796940.HMPREF9628_00133	86.3	3.91e-16	N/A	N/A
structural_annotation	UHGV-0204266_18	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_19	phrog_37549	66.6	2.6e-23	virion structural protein	head and packaging
UniRef90	UHGV-0204266_19	UniRef90_A0A3D0W045	231.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0204266_19	1161901.I1TLF2_9CAUD	94.7	1.88e-17	N/A	N/A
structural_annotation	UHGV-0204266_19	PF02010,PF06199,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_20	phrog_33680	112.0	3.6e-33	N/A	unknown function
UniRef90	UHGV-0204266_20	UniRef90_A0A1M6L1P7	202.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0204266_20	1408415.JHXL01000001_gene400	179.0	9.80909e-45	phage tail tape measure protein	N/A
COG	UHGV-0204266_20	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0204266_20	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204266_22	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_23	phrog_88	54.3	0.0000000000000018	major tail protein	tail
UniRef90	UHGV-0204266_23	UniRef90_A0A174CNN5	67.4	0.000000000233	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0204266_23	1195236.CTER_5106	72.8	0.000000000000341	phage major tail protein, phi13 family	N/A
COG	UHGV-0204266_23	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204266_23	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204266_24	1203606.HMPREF1526_00974	90.1	6.8e-21	N/A	N/A
structural_annotation	UHGV-0204266_24	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204266_25	1203606.HMPREF1526_00975	82.0	1.01e-18	N/A	N/A
structural_annotation	UHGV-0204266_25	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_26	phrog_1951	80.2	1.8e-23	head-tail adaptor	connector
UniRef90	UHGV-0204266_26	UniRef90_A0A890FC27	67.8	0.00000000000142	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0204266_26	1121428.DESHY_20140___1	64.3	0.00000000000554	head-tail adaptor	N/A
COG	UHGV-0204266_26	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0204266_26	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_27	phrog_5223	53.8	0.0000000000000027	neck protein	connector
UniRef90	UHGV-0204266_27	UniRef90_A8SKP1	60.1	0.000000000844	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0204266_27	411465.PEPMIC_00737	60.1	0.000000000142	N/A	N/A
structural_annotation	UHGV-0204266_27	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_28	phrog_10	174.8	0	major head protein	head and packaging
UniRef90	UHGV-0204266_28	UniRef90_UPI0018AA1B7F	358.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0204266_28	318464.IO99_13750	328.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0204266_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0204266_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0204266_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0204266_28	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0204266_29	K01358	134.7	9.5e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0204266_29	phrog_94	201.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0204266_29	UniRef90_U4R420	257.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0204266_29	1203606.HMPREF1526_00979	218.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0204266_29	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0204266_29	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0204266_29	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_30	phrog_12	170.0	0	portal protein	head and packaging
UniRef90	UHGV-0204266_30	UniRef90_R8W4B0	454.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-0204266_30	1203606.HMPREF1526_00980	454.0	0	Portal protein	N/A
Pfam	UHGV-0204266_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0204266_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0204266_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_31	phrog_9	400.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0204266_31	UniRef90_UPI001D07C789	800.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0204266_31	1203606.HMPREF1526_00981	756.0	0	Terminase	N/A
Pfam	UHGV-0204266_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0204266_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0204266_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0204266_31	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_32	phrog_1066	115.7	2.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0204266_32	1382358.JHVN01000024_gene1703	107.0	3.1e-28	N/A	N/A
structural_annotation	UHGV-0204266_32	PF05119,TIGR01558	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204266_33	UniRef90_R6M5E4	115.0	2.26e-31	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-0204266_33	1235793.C809_01915	120.0	1.37e-33	HNH endonuclease	N/A
COG	UHGV-0204266_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0204266_34	phrog_3584	126.9	1.6e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0204266_34	742738.HMPREF9460_00867	129.0	6.43e-34	N/A	N/A
structural_annotation	UHGV-0204266_34	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0204266_35	K07319	149.9	1.4013e-44	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0204266_35	phrog_67	142.7	2.20004e-42	DNA methyltransferase	other
UniRef90	UHGV-0204266_35	UniRef90_UPI00055C7461	243.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0204266_35	1444310.JANV01000096_gene3256	135.0	1.98e-34	DNA methylase	N/A
PADLOC	UHGV-0204266_35	MTase_II_00157	115.1	5.8e-35	Type II methyltransferase	RM
Pfam	UHGV-0204266_35	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0204266_35	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0204266_35	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204266_38	PF18760	N/A	N/A	N/A	N/A
KOfam	UHGV-0204266_40	K03497	84.1	2.3e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0204266_40	phrog_27290	336.2	0	N/A	unknown function
UniRef90	UHGV-0204266_40	UniRef90_UPI0003130F10	310.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0204266_40	1007096.BAGW01000033_gene1613	310.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0204266_40	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0204266_40	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0204266_40	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0204266_41	K03496	189.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0204266_41	phrog_164	160.9	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204266_41	UniRef90_A0A845R968	307.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0204266_41	742738.HMPREF9460_00854	199.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0204266_41	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0204266_41	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0204266_41	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0204266_42	K02314	235.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0204266_42	phrog_19	227.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204266_42	UniRef90_A0A3D1V9Y4	232.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0204266_42	1329516.JPST01000014_gene603	149.0	2.58e-37	DnaB-like helicase C terminal domain	N/A
Pfam	UHGV-0204266_42	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0204266_42	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0204266_42	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0204266_42	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_43	phrog_270	109.5	4e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204266_43	UniRef90_UPI001F3D92C2	157.0	1.80768e-43	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204266_43	742738.HMPREF9460_00851	140.0	9.63e-38	Helix-turn-helix domain	N/A
Pfam	UHGV-0204266_43	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0204266_43	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0204266_43	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204266_45	UniRef90_A0A098GES5	103.0	7.46e-27	Putative phage associated protein	N/A
structural_annotation	UHGV-0204266_45	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204266_46	UniRef90_UPI001C96492F	53.9	0.000000355	excisionase family DNA-binding protein	N/A
Pfam	UHGV-0204266_46	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0204266_46	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0204266_46	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0204266_46	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0204266_48	phrog_6499	116.9	9.3e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204266_48	UniRef90_A0A3D4EJF0	127.0	8.6e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0204266_48	1415774.U728_1274	106.0	1.92e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0204266_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204266_48	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0204266_48	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0204266_49	K22300	74.1	2.7e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0204266_49	phrog_8	60.8	3.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204266_49	UniRef90_UPI001BB47897	69.3	0.000000000000244	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204266_49	693746.OBV_27490	67.0	0.000000000000329	sequence-specific DNA binding	N/A
Pfam	UHGV-0204266_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204266_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0204266_52	K22300	67.2	3.6e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0204266_52	phrog_8	76.9	3.5e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204266_52	UniRef90_A0A845MZE2	85.5	1.79e-19	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204266_52	1211817.CCAT010000003_gene273	69.3	0.000000000000402	transcriptional regulator	N/A
PADLOC	UHGV-0204266_52	retron_type_VI_hth_cluster2_1	44.6	0.0000000000039	N/A	Retron
Pfam	UHGV-0204266_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204266_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
COG	UHGV-0204266_54	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0204266_54	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204266_55	742741.HMPREF9475_00398	53.9	0.00000764	N/A	N/A
KOfam	UHGV-0204266_56	K14059	228.3	0	int; integrase	N/A
PHROG	UHGV-0204266_56	phrog_1	194.7	0	integrase	integration and excision
UniRef90	UHGV-0204266_56	UniRef90_A0A3D1VH24	304.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0204266_56	742738.HMPREF9460_04031	261.0	0	Phage integrase family	N/A
Pfam	UHGV-0204266_56	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0204266_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0204266_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0204266_56	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A