UHGV-0204312 (vOTU-150098)

Viral Genome: UHGV-0204312

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0204312
vOTU ID	vOTU-150098
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781780_a1_ct229409_vs1@Siphoviridae__sp._ctW3o1
Associated BioSample	SAMN09781780
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.46 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.62
Jumbo phage	No

Genome content
Genome length (bp)	29,597
GC content	57.67%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	94%
Average CDS length (bps)	660.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0204312_1	phrog_119	75.5	6.7e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204312_1	UniRef90_G9YSB5	150.0	2.66247e-44	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_1	1235792.C808_00081	88.6	7.42e-21	HNH nucleases	N/A
Pfam	UHGV-0204312_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0204312_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0204312_2	UniRef90_UPI001F232519	103.0	8.86e-28	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_2	1226322.HMPREF1545_00110	97.8	2.81e-26	Cysteine-rich KTR	N/A
Pfam	UHGV-0204312_2	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0204312_2	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_3	phrog_3584	72.1	8.1e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0204312_3	742738.HMPREF9460_04063	221.0	0	N/A	N/A
structural_annotation	UHGV-0204312_3	PF01446	N/A	N/A	N/A	N/A
Pfam	UHGV-0204312_4	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0204312_4	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0204312_4	PF14354,NF007260	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204312_5	665956.HMPREF1032_03087	55.8	0.000000329	N/A	N/A
KOfam	UHGV-0204312_7	K03497	72.3	3.3e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0204312_7	phrog_27290	344.4	0	N/A	unknown function
UniRef90	UHGV-0204312_7	UniRef90_A0A3D4EJM0	318.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0204312_7	742738.HMPREF9460_00856	275.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0204312_7	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0204312_7	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0204312_7	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0204312_8	K03496	190.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0204312_8	phrog_164	137.7	9.19994e-41	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204312_8	UniRef90_UPI000318E277	304.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0204312_8	1007096.BAGW01000033_gene1614	294.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0204312_8	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0204312_8	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0204312_8	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0204312_9	K02314	275.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0204312_9	phrog_19	234.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204312_9	UniRef90_UPI00195856D7	371.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0204312_9	693746.OBV_27440	259.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0204312_9	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0204312_9	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0204312_9	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0204312_9	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204312_10	693746.OBV_19830	97.1	2.02e-23	DnaD domain protein	N/A
COG	UHGV-0204312_10	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0204312_11	phrog_270	52.7	0.00000000000001	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204312_11	UniRef90_UPI001C0106CE	103.0	1.6e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_11	693746.OBV_19830	103.0	3.25e-25	DnaD domain protein	N/A
Pfam	UHGV-0204312_11	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0204312_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0204312_13	PF21327	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_14	phrog_6499	108.3	4.2e-32	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204312_14	UniRef90_UPI001BB4836B	113.0	3.87e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_14	742738.HMPREF9460_04043	108.0	6.49e-28	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0204312_14	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0204312_14	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0204312_14	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0204312_16	K22300	59.2	9e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0204312_16	phrog_3	43.5	0.000000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-0204312_16	UniRef90_UPI001D013835	52.0	0.000000352	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_16	1410650.JHWL01000006_gene1493	52.0	0.000000578	sequence-specific DNA binding	N/A
Pfam	UHGV-0204312_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204312_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0204312_16	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204312_17	UniRef90_UPI001E54DE4F	79.3	4.79e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_17	693746.OBV_19770	52.4	0.000000389	sequence-specific DNA binding	N/A
Pfam	UHGV-0204312_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204312_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0204312_17	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204312_18	UniRef90_A0A3D1I232	80.9	5.39e-18	zinc_ribbon_2 domain-containing protein	N/A
structural_annotation	UHGV-0204312_18	TIGR04165,COG3478	N/A	N/A	N/A	N/A
KOfam	UHGV-0204312_19	K06400	306.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0204312_19	phrog_95	321.5	0	integrase	integration and excision
UniRef90	UHGV-0204312_19	UniRef90_A0A352ULE7	476.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0204312_19	1120746.CCNL01000010_gene1415	374.0	0	recombinase activity	N/A
Pfam	UHGV-0204312_19	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0204312_19	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0204312_19	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0204312_19	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0204312_21	K22300	41.0	0.00000000004	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0204312_21	UniRef90_A0A6N3FXW7	125.0	1.61e-35	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0204312_21	742738.HMPREF9460_04059	65.1	0.00000000000517	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0204312_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204312_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0204312_21	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0204312_24	K03749	43.6	0.0000000000051	dedD; DedD protein	N/A
PHROG	UHGV-0204312_24	phrog_7698	72.4	4.3e-23	endolysin	lysis
UniRef90	UHGV-0204312_24	UniRef90_A0A810PZ73	398.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_24	411473.RUMCAL_02267	96.7	1.64e-20	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0204312_24	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0204312_24	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0204312_24	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0204312_24	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0204312_24	PF01520,PF08230,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_25	phrog_881	89.4	2e-26	holin	lysis
UniRef90	UHGV-0204312_25	UniRef90_UPI00189D3A4F	82.8	1.87e-19	phage holin	N/A
eggNOG-mapper	UHGV-0204312_25	742740.HMPREF9474_02251	80.1	4.07e-19	Putative phage holin Dp-1	N/A
Pfam	UHGV-0204312_25	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0204312_25	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_26	phrog_1863	71.8	5.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0204312_26	718252.FP2_04900	113.0	5.33e-32	N/A	N/A
PHROG	UHGV-0204312_27	phrog_1067	332.0	0	minor head protein	head and packaging
UniRef90	UHGV-0204312_27	UniRef90_A0A1C6H6B4	506.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0204312_27	1123263.AUKY01000068_gene489	370.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0204312_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0204312_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0204312_27	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0204312_27	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_28	phrog_33	59.8	7.6e-17	distal tail protein Dit	tail
UniRef90	UHGV-0204312_28	UniRef90_A0A2X2UUQ3	153.0	2.08934e-42	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0204312_28	632245.CLP_1659	82.8	2.24e-16	tail component	N/A
COG	UHGV-0204312_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0204312_28	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_29	phrog_6900	240.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0204312_29	UniRef90_A0A373CK98	250.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0204312_29	573061.Clocel_3967	295.0	0	tape measure	N/A
COG	UHGV-0204312_29	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0204312_29	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_32	phrog_88	91.5	8.7e-27	major tail protein	tail
UniRef90	UHGV-0204312_32	UniRef90_G9YSC5	124.0	2.55e-32	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0204312_32	33035.JPJF01000039_gene278	70.1	0.0000000000041	N/A	N/A
NCBIFam	UHGV-0204312_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0204312_32	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_33	phrog_5	48.4	0.0000000000002	tail completion or Neck1 protein	connector
UniRef90	UHGV-0204312_33	UniRef90_R6UNR2	137.0	1.53e-38	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0204312_33	908340.HMPREF9406_2573	137.0	2.57e-39	N/A	N/A
structural_annotation	UHGV-0204312_33	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204312_34	999413.HMPREF1094_02005	89.7	1.05e-21	N/A	N/A
structural_annotation	UHGV-0204312_34	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_35	phrog_19734	114.9	5e-34	N/A	unknown function
UniRef90	UHGV-0204312_35	UniRef90_A0A6I7GNS7	121.0	5.68e-33	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0204312_35	349161.Dred_2602	84.3	2.44e-19	N/A	N/A
structural_annotation	UHGV-0204312_35	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_36	phrog_749	60.7	2.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0204312_36	349161.Dred_2603	84.0	8.6e-20	N/A	N/A
PHROG	UHGV-0204312_37	phrog_10	148.6	6.30584e-44	major head protein	head and packaging
UniRef90	UHGV-0204312_37	UniRef90_G9YSC0	639.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_37	610130.Closa_0744	389.0	0	Phage capsid family	N/A
Pfam	UHGV-0204312_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0204312_37	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0204312_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0204312_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0204312_37	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0204312_38	K01358	135.2	6.50001e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0204312_38	phrog_94	255.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0204312_38	UniRef90_A0A1Y4BT12	334.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0204312_38	349161.Dred_2605	315.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0204312_38	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0204312_38	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0204312_38	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_39	phrog_12	123.9	4.8e-37	portal protein	head and packaging
UniRef90	UHGV-0204312_39	UniRef90_UPI0018755FA4	505.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0204312_39	610130.Closa_0742	305.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0204312_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0204312_39	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0204312_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0204312_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_40	phrog_9	231.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0204312_40	UniRef90_A0A6I7GGF0	907.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0204312_40	1235792.C808_00083	608.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0204312_40	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0204312_40	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0204312_40	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0204312_40	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0204312_41	phrog_5110	60.2	2.1e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0204312_41	UniRef90_UPI00195E8788	116.0	4.86e-30	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0204312_41	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0204312_41	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0204312_42	K03497	52.6	0.0000000000000066	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0204312_42	phrog_21498	265.7	0	N/A	unknown function
UniRef90	UHGV-0204312_42	UniRef90_A0A7X2P836	298.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0204312_42	469378.Ccur_02830	265.0	0	DNA binding	N/A
PADLOC	UHGV-0204312_42	MTase_II_00015	85.2	9.1e-25	Type II methyltransferase	RM
Pfam	UHGV-0204312_42	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0204312_42	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0204312_42	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A