UHGV-0204376 (vOTU-079112)

Viral Genome: UHGV-0204376

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0204376
vOTU ID	vOTU-079112
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN10080935_a1_ct11648_vs1@linear@Siphoviridae__sp._ctr6g1
Associated BioSample	SAMN10080935
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.49 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.64
Jumbo phage	No

Genome content
Genome length (bp)	40,036
GC content	52.93%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	91%
Average CDS length (bps)	537.35
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0204376_2	phrog_119	58.4	1.1e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204376_2	UniRef90_A0A2A7B6I3	228.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0204376_2	610130.Closa_0739	108.0	4.44e-29	HNH nucleases	N/A
Pfam	UHGV-0204376_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0204376_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0204376_3	K00571	75.6	8.7e-22	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0204376_3	phrog_12862	146.7	8.54792e-44	N/A	unknown function
UniRef90	UHGV-0204376_3	UniRef90_UPI001EFC22B1	165.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0204376_3	1474867.A0A076FIB3_9PHYC	159.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0204376_3	MTase_II_00037	156.4	0	Type II methyltransferase	RM
Pfam	UHGV-0204376_3	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0204376_3	PF01555,MF_01057,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_6	phrog_3136	138.6	1.99993e-41	N/A	unknown function
UniRef90	UHGV-0204376_6	UniRef90_UPI001C02A61B	204.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0204376_6	97139.C824_00742	79.3	2.56e-16	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0204376_6	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0204376_6	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204376_9	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0204376_10	K03497	82.4	9e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0204376_10	phrog_4715	108.8	6.2e-32	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204376_10	UniRef90_A0A2A7B6Q0	368.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0204376_10	411471.SUBVAR_05842	178.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0204376_10	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0204376_10	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0204376_10	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0204376_12	K03496	207.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0204376_12	phrog_164	153.5	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204376_12	UniRef90_A0A2A7B6H3	358.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0204376_12	411471.SUBVAR_05839	229.0	0	AAA domain	N/A
Pfam	UHGV-0204376_12	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0204376_12	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0204376_12	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204376_14	UniRef90_UPI001CBE86CE	154.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0204376_14	748224.HMPREF9436_00735	153.0	1.68156e-44	N/A	N/A
Pfam	UHGV-0204376_14	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0204376_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0204376_15	K03111	145.3	6.19374e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0204376_15	phrog_44	148.2	4.34403e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204376_15	UniRef90_A0A329TTF5	199.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0204376_15	748224.HMPREF9436_00638	202.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0204376_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0204376_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0204376_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0204376_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0204376_15	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_16	phrog_7566	86.9	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0204376_16	411471.SUBVAR_05830	105.0	2.25e-28	N/A	N/A
PHROG	UHGV-0204376_19	phrog_72	47.5	0.00000000000032	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0204376_19	411471.SUBVAR_05829	139.0	1.82e-39	N/A	N/A
structural_annotation	UHGV-0204376_19	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_20	phrog_14970	45.0	0.000000000002	N/A	unknown function
COG	UHGV-0204376_20	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0204376_20	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204376_23	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
Pfam	UHGV-0204376_26	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0204376_29	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204376_30	UniRef90_A0A2A7AM72	184.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0204376_30	1378168.N510_01712	64.3	0.0000000000791	N/A	N/A
structural_annotation	UHGV-0204376_30	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204376_31	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204376_34	394503.Ccel_2974	65.1	0.00000000302	N/A	N/A
structural_annotation	UHGV-0204376_34	PF06776,COG5342	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_37	phrog_1373	40.4	0.000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204376_37	UniRef90_A0A2A7B6N3	194.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0204376_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204376_37	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0204376_37	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0204376_38	K14059	183.9	0	int; integrase	N/A
PHROG	UHGV-0204376_38	phrog_1	165.3	0	integrase	integration and excision
UniRef90	UHGV-0204376_38	UniRef90_A0A367GI93	221.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0204376_38	1507.HMPREF0262_00307	162.0	1.30321e-43	Phage integrase family	N/A
Pfam	UHGV-0204376_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0204376_38	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0204376_38	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204376_39	UniRef90_A0A8F0WD75	83.6	7.52e-17	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0204376_39	1378168.N510_03079	89.0	4.08e-19	N/A	N/A
structural_annotation	UHGV-0204376_40	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_41	phrog_16490	55.1	0.0000000000000017	N/A	unknown function
PHROG	UHGV-0204376_42	phrog_22984	54.4	0.0000000000000018	N/A	unknown function
KOfam	UHGV-0204376_45	K22299	46.2	0.00000000000092	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0204376_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0204376_45	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204376_47	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_49	phrog_15303	81.9	6.3e-24	N/A	unknown function
PHROG	UHGV-0204376_50	phrog_1863	77.1	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0204376_50	718252.FP2_04900	144.0	2.52234e-44	N/A	N/A
KOfam	UHGV-0204376_51	K07273	170.7	0	acm; lysozyme	N/A
PHROG	UHGV-0204376_51	phrog_291	131.8	6.6e-39	endolysin	lysis
UniRef90	UHGV-0204376_51	UniRef90_UPI001D0EE7D8	280.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0204376_51	748224.HMPREF9436_00154	269.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0204376_51	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0204376_51	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0204376_51	PF01183,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204376_52	UniRef90_A5ZE05	348.0	0	Ser/Thr phosphatase family protein	N/A
eggNOG-mapper	UHGV-0204376_52	411901.BACCAC_01116	348.0	0	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-0204376_52	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
structural_annotation	UHGV-0204376_52	PF10651,PF12850,MF_00905,NF008359,NF038186,COG1409	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_54	phrog_1067	179.4	0	minor head protein	head and packaging
UniRef90	UHGV-0204376_54	UniRef90_A0A2A7AM44	716.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0204376_54	1123263.AUKY01000068_gene489	197.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0204376_54	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0204376_54	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0204376_54	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0204376_54	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_55	phrog_33	73.2	6.2e-21	distal tail protein Dit	tail
UniRef90	UHGV-0204376_55	UniRef90_A0A173Z1X4	140.0	1.09e-37	Phage-related protein	N/A
eggNOG-mapper	UHGV-0204376_55	908340.HMPREF9406_2569	94.4	1.26e-20	phage tail	N/A
NCBIFam	UHGV-0204376_55	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0204376_55	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0204376_55	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_56	phrog_9959	94.7	5.6e-28	tail length tape measure protein	tail
UniRef90	UHGV-0204376_56	UniRef90_A0A2A7ALS3	813.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0204376_56	596328.HMPREF0578_1241	192.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0204376_56	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0204376_56	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0204376_56	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0204376_56	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_59	phrog_88	92.1	6.3e-27	major tail protein	tail
UniRef90	UHGV-0204376_59	UniRef90_G9YSC5	108.0	3.19e-26	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0204376_59	349161.Dred_2600	64.3	0.00000000101	N/A	N/A
NCBIFam	UHGV-0204376_59	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0204376_59	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_60	phrog_5	49.9	0.00000000000006	tail completion or Neck1 protein	connector
UniRef90	UHGV-0204376_60	UniRef90_A0A1C6FG30	132.0	3.65e-36	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0204376_60	908340.HMPREF9406_2573	111.0	1.01e-28	N/A	N/A
structural_annotation	UHGV-0204376_60	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204376_61	999413.HMPREF1094_02005	70.5	0.000000000000025	N/A	N/A
structural_annotation	UHGV-0204376_61	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_62	phrog_19734	92.2	5.2e-27	N/A	unknown function
UniRef90	UHGV-0204376_62	UniRef90_A0A0D8I708	78.6	3.75e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0204376_62	349161.Dred_2602	72.8	0.0000000000000109	N/A	N/A
structural_annotation	UHGV-0204376_62	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_63	phrog_749	58.1	1.5e-16	N/A	unknown function
UniRef90	UHGV-0204376_63	UniRef90_W7B6R4	54.7	0.000000184	Gp6 protein	N/A
eggNOG-mapper	UHGV-0204376_63	1211817.CCAT010000053_gene2133	66.2	0.000000000000988	N/A	N/A
PHROG	UHGV-0204376_64	phrog_10	130.4	1.1e-38	major head protein	head and packaging
UniRef90	UHGV-0204376_64	UniRef90_A0A2A7B712	726.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0204376_64	1235792.C808_00086	449.0	0	Phage capsid family	N/A
Pfam	UHGV-0204376_64	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0204376_64	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0204376_64	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0204376_64	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0204376_64	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0204376_65	K01358	75.8	7.6e-22	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0204376_65	phrog_94	124.6	1.1e-36	head maturation protease	head and packaging
UniRef90	UHGV-0204376_65	UniRef90_UPI001C0ECD60	138.0	1.82e-36	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0204376_65	1232452.BAIB02000007_gene1626	130.0	1.58e-34	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0204376_65	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0204376_65	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0204376_65	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_66	phrog_12	122.7	2.8e-36	portal protein	head and packaging
UniRef90	UHGV-0204376_66	UniRef90_A0A2A7B6S8	553.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0204376_66	349161.Dred_2606	258.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0204376_66	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0204376_66	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0204376_66	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0204376_66	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_67	phrog_9	244.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0204376_67	UniRef90_A0A2A7ALT4	1064.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0204376_67	1235792.C808_00083	636.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0204376_67	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0204376_67	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0204376_67	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0204376_68	phrog_13845	54.9	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0204376_68	1399942.U3PDR2_9CAUD	66.6	0.00000000000415	N/A	N/A
structural_annotation	UHGV-0204376_68	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A