UHGV-0204414 (vOTU-047779)

Viral Genome: UHGV-0204414

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0204414
vOTU ID	vOTU-047779
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252291_a1_ct25260@circular@Siphoviridae__sp._ctXmv260
Associated BioSample	SAMN11252291
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9696
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.77
Jumbo phage	No

Genome content
Genome length (bp)	32,753
GC content	40.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	94%
Average CDS length (bps)	618.30
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0204414_2	K03111	133.1	3.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0204414_2	phrog_44	134.3	8.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204414_2	UniRef90_A0A2V2ET02	142.0	7.20996e-41	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0204414_2	1042163.BRLA_c031440	111.0	9.95e-30	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0204414_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0204414_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0204414_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0204414_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0204414_2	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_5	phrog_4897	111.3	1.3e-32	kinase	other
UniRef90	UHGV-0204414_5	UniRef90_UPI000F809883	99.0	2.87e-24	N/A	N/A
eggNOG-mapper	UHGV-0204414_5	500635.MITSMUL_03175	78.6	6.87e-16	N/A	N/A
Pfam	UHGV-0204414_5	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0204414_6	phrog_398	205.3	0	N/A	unknown function
UniRef90	UHGV-0204414_6	UniRef90_UPI00137B6F1E	222.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0204414_6	1485543.JMME01000021_gene802	207.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0204414_6	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0204414_6	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_7	phrog_4973	47.4	0.00000000000032	N/A	unknown function
Pfam	UHGV-0204414_7	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0204414_7	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_10	phrog_424	108.8	5.3e-32	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0204414_10	UniRef90_R6PFX4	385.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-0204414_10	272563.CD630_09300	78.6	0.0000000000000159	N/A	N/A
PADLOC	UHGV-0204414_10	BrxP_00001	56.4	4.1e-16	BrxP	BREX
Pfam	UHGV-0204414_10	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0204414_10	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0204414_10	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_11	phrog_478	49.0	0.0000000000001	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0204414_11	UniRef90_R6E548	94.0	4.19e-23	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0204414_11	324057.Pjdr2_1537	53.9	0.0000000343	N/A	N/A
PHROG	UHGV-0204414_13	phrog_3136	120.4	7.9e-36	N/A	unknown function
UniRef90	UHGV-0204414_13	UniRef90_UPI001CBCD733	101.0	1.43e-23	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0204414_13	1007096.BAGW01000031_gene120	57.4	0.000000208	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0204414_13	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0204414_13	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_15	phrog_824	101.4	5.9e-30	N/A	unknown function
UniRef90	UHGV-0204414_15	UniRef90_A0A3D5TLJ2	90.5	6.4e-20	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0204414_15	1027273.GZ77_20585	84.0	1.34e-18	VRR-NUC domain	N/A
Pfam	UHGV-0204414_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0204414_17	K00558	197.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0204414_17	phrog_116	216.5	0	DNA methyltransferase	other
UniRef90	UHGV-0204414_17	UniRef90_A0A7K3ZBD4	376.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0204414_17	397290.C810_05213	327.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0204414_17	MTase_II_00058	220.2	0	Type II methyltransferase	RM
Pfam	UHGV-0204414_17	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0204414_17	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0204414_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0204414_17	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_18	phrog_14970	217.5	0	N/A	unknown function
UniRef90	UHGV-0204414_18	UniRef90_A0A3P6JH63	166.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0204414_18	469604.HMPREF0946_00830	167.0	0	DNA recombination	N/A
COG	UHGV-0204414_18	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0204414_18	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_19	phrog_253	127.6	8.3e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204414_19	UniRef90_UPI001898EED4	105.0	9.86e-26	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0204414_19	1129146.H2BDF7_9CAUD	86.3	5.07e-19	Siphovirus Gp157	N/A
Pfam	UHGV-0204414_19	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0204414_19	PF05565	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204414_22	PF01376	N/A	N/A	N/A	N/A
KOfam	UHGV-0204414_24	K07729	60.8	3.1e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0204414_24	phrog_8	59.8	7.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204414_24	UniRef90_UPI0009E291B2	50.4	0.000000708	helix-turn-helix transcriptional regulator	N/A
PADLOC	UHGV-0204414_24	retron_type_VI_hth_cluster2_1	40.3	0.000000000082	N/A	Retron
Pfam	UHGV-0204414_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204414_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0204414_24	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_32	phrog_5302	196.1	0	tail protein	tail
eggNOG-mapper	UHGV-0204414_32	1243664.CAVL020000054_gene3009	85.5	0.0000000000000287	N/A	N/A
structural_annotation	UHGV-0204414_32	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204414_33	PF09097,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204414_36	UniRef90_A0A2Z4GU91	98.6	1.09e-24	Minor capsid protein	N/A
structural_annotation	UHGV-0204414_37	PF07405,TIGR01563	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204414_39	UniRef90_A0A2Z4GUC0	593.0	0	Chitobiase/beta-hexosaminidase	N/A
eggNOG-mapper	UHGV-0204414_39	1408324.JNJK01000056_gene3661	69.3	0.00000000199	Pilus formation protein N terminal region	N/A
Pfam	UHGV-0204414_39	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
COG	UHGV-0204414_39	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0204414_39	PF05065,PF13620,MF_04119,TIGR04387,TIGR04134,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_41	phrog_581	90.8	2.1e-26	minor head protein	head and packaging
UniRef90	UHGV-0204414_41	UniRef90_A0A2Z4GUI4	239.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0204414_41	997296.PB1_16234	62.4	0.0000000694	Phage minor capsid protein 2	N/A
Pfam	UHGV-0204414_41	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0204414_41	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204414_41	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_42	phrog_533	114.7	6e-34	portal protein	head and packaging
UniRef90	UHGV-0204414_42	UniRef90_A0A2Z4GUT7	591.0	0	Portal protein	N/A
structural_annotation	UHGV-0204414_42	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0204414_43	K06909	121.3	1.2e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0204414_43	phrog_2	65.9	8.9e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0204414_43	UniRef90_A0A2Z4GUK2	303.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0204414_43	66692.ABC2839	66.6	0.00000000537	Terminase RNAseH like domain	N/A
Pfam	UHGV-0204414_43	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0204414_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0204414_43	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-0204414_44	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-0204414_44	PF02796,NF040785	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_45	phrog_774	43.3	0.0000000000074	N/A	unknown function
structural_annotation	UHGV-0204414_45	PF10458	N/A	N/A	N/A	N/A
PHROG	UHGV-0204414_46	phrog_19458	187.5	0	primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0204414_46	748224.HMPREF9436_03092	152.0	4.47e-39	N/A	N/A
COG	UHGV-0204414_46	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
KOfam	UHGV-0204414_49	K07317	66.8	3e-19	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0204414_49	phrog_11371	59.8	3.7e-17	N/A	unknown function
UniRef90	UHGV-0204414_49	UniRef90_A0A1C6BWK1	115.0	2.47e-30	Modification methylase VspI	N/A
eggNOG-mapper	UHGV-0204414_49	582744.Msip34_2031	104.0	1.53e-26	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0204414_49	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0204414_49	PF20473,MF_02217,NF001556,COG0742	N/A	N/A	N/A	N/A