UHGV-0204525 (vOTU-047803)

Viral Genome: UHGV-0204525

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0204525
vOTU ID	vOTU-047803
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781759_a1_ct148639_vs1@Podoviridae__sp._ctazn1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.32
Jumbo phage	No

Genome content
Genome length (bp)	38,563
GC content	59.07%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	94%
Average CDS length (bps)	697.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0204525_2	UniRef90_UPI001D07DA55	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204525_2	1519439.JPJG01000060_gene1894	191.0	0	N/A	N/A
Pfam	UHGV-0204525_2	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0204525_2	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0204525_2	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204525_3	1519439.JPJG01000060_gene1895	88.2	1.35e-19	N/A	N/A
structural_annotation	UHGV-0204525_3	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_5	phrog_937	43.6	0.0000000000052	hemolysin	other
eggNOG-mapper	UHGV-0204525_5	1519439.JPJG01000023_gene533	51.2	0.000000474	N/A	N/A
PHROG	UHGV-0204525_6	phrog_443	59.9	6.8e-17	holin	lysis
UniRef90	UHGV-0204525_6	UniRef90_A0A4R1QPE5	93.2	1.07e-23	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0204525_6	1469948.JPNB01000002_gene3855	93.2	1.8e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0204525_6	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0204525_6	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0204525_7	K01447	97.1	2.6e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0204525_7	phrog_670	126.7	2.5e-37	endolysin	lysis
UniRef90	UHGV-0204525_7	UniRef90_R8W9R7	118.0	4.26e-29	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0204525_7	1203606.HMPREF1526_00589	118.0	7.15e-30	Ami_2	N/A
Pfam	UHGV-0204525_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0204525_7	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0204525_7	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_9	phrog_25567	44.8	0.0000000000015	N/A	unknown function
UniRef90	UHGV-0204525_9	UniRef90_UPI00164AED9E	90.5	2.62e-21	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0204525_9	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0204525_9	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_10	phrog_374	70.7	3.7e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204525_10	UniRef90_A0A7K3I523	106.0	9.17e-25	AP2/ERF domain-containing protein	N/A
eggNOG-mapper	UHGV-0204525_10	887929.HMP0721_2409	85.5	3.76e-17	N/A	N/A
structural_annotation	UHGV-0204525_10	PF17375	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204525_14	UniRef90_A0A8F0WD75	80.1	0.00000000000000102	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0204525_14	1378168.N510_03079	72.0	0.000000000000557	N/A	N/A
KOfam	UHGV-0204525_16	K06400	253.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0204525_16	phrog_95	266.7	0	integrase	integration and excision
UniRef90	UHGV-0204525_16	UniRef90_A0A3A9FR25	409.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0204525_16	1408437.JNJN01000002_gene1420	402.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0204525_16	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0204525_16	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0204525_16	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0204525_16	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0204525_16	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204525_17	UniRef90_A0A810PZB1	70.1	0.0000000000037	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0204525_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204525_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0204525_17	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0204525_20	K22300	57.6	2.8e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0204525_20	phrog_8	48.1	0.00000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0204525_20	UniRef90_A0A844DFR0	120.0	1.35e-32	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0204525_20	748224.HMPREF9436_01444	117.0	5.1e-32	N/A	N/A
Pfam	UHGV-0204525_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0204525_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0204525_20	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204525_28	665956.HMPREF1032_03087	68.6	0.00000000000715	N/A	N/A
PHROG	UHGV-0204525_31	phrog_190	103.1	2.5e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204525_31	UniRef90_UPI0006C2AC63	127.0	6.53e-35	N/A	N/A
eggNOG-mapper	UHGV-0204525_31	1226322.HMPREF1545_00295	116.0	4.05e-31	N/A	N/A
Pfam	UHGV-0204525_31	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0204525_31	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204525_33	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_35	phrog_2245	86.3	3.1e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0204525_35	UniRef90_A0A4U9RLZ8	70.1	0.000000000000989	N/A	N/A
eggNOG-mapper	UHGV-0204525_35	706433.HMPREF9430_01279	67.0	0.00000000000313	N/A	N/A
structural_annotation	UHGV-0204525_35	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_36	phrog_3584	121.9	4.4e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0204525_36	537013.CLOSTMETH_02141	69.3	0.0000000000125	N/A	N/A
structural_annotation	UHGV-0204525_36	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_38	phrog_606	67.8	1.5e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0204525_38	UniRef90_UPI001F487344	126.0	1.38e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0204525_38	397290.C810_05185	125.0	1.13e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-0204525_38	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0204525_38	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0204525_39	K06909	154.1	1.4013e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0204525_39	phrog_979	140.8	4.49817e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0204525_39	UniRef90_A0A810Q5R0	648.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0204525_39	1410650.JHWL01000003_gene2834	614.0	0	N/A	N/A
Pfam	UHGV-0204525_39	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0204525_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0204525_39	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_40	phrog_511	237.4	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0204525_40	1519439.JPJG01000060_gene1903	291.0	0	N/A	N/A
structural_annotation	UHGV-0204525_40	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_41	phrog_7121	106.6	1.6e-31	tail fiber protein	tail
UniRef90	UHGV-0204525_41	UniRef90_R5ILW4	742.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0204525_41	1226322.HMPREF1545_00783	83.6	0.0000000000000272	Chaperone of endosialidase	N/A
Pfam	UHGV-0204525_41	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0204525_41	PF10248	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_43	phrog_156	323.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0204525_43	1410650.JHWL01000003_gene2833	542.0	0	N/A	N/A
structural_annotation	UHGV-0204525_43	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_44	phrog_13908	138.6	4.00001e-41	N/A	unknown function
eggNOG-mapper	UHGV-0204525_44	1410650.JHWL01000003_gene2831	97.4	8.77e-21	N/A	N/A
PHROG	UHGV-0204525_45	phrog_1357	220.7	0	major head protein	head and packaging
UniRef90	UHGV-0204525_45	UniRef90_A0A2V2CFL5	405.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0204525_45	1410650.JHWL01000003_gene2830	274.0	0	N/A	N/A
Pfam	UHGV-0204525_45	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0204525_45	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0204525_45	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0204525_47	phrog_12105	127.4	6.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-0204525_47	1519439.JPJG01000060_gene1891	73.6	0.00000000000000443	N/A	N/A
UniRef90	UHGV-0204525_48	UniRef90_R5DCX9	171.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0204525_48	1410650.JHWL01000003_gene2815	123.0	2.19e-28	N/A	N/A
PHROG	UHGV-0204525_49	phrog_22978	143.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0204525_49	1408437.JNJN01000039_gene389	490.0	0	heme binding	N/A
Pfam	UHGV-0204525_49	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0204525_49	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0204525_49	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0204525_50	phrog_33872	58.6	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0204525_50	693746.OBV_19740	55.8	0.00000000627	N/A	N/A
structural_annotation	UHGV-0204525_51	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-0204525_52	K16628	93.5	7.8e-28	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0204525_52	phrog_819	118.7	4.2e-35	tail protein	tail
eggNOG-mapper	UHGV-0204525_52	1519439.JPJG01000060_gene1892	88.6	7.59e-17	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0204525_52	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0204525_52	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A