UHGV-0205031 (vOTU-030734)

Viral Genome: UHGV-0205031

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0205031
vOTU ID	vOTU-030734
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11031380_a1_ct15531_vs1@linear@Siphoviridae__sp._ct3U91
Associated BioSample	SAMN11031380
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.99 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9653
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.56
Jumbo phage	No

Genome content
Genome length (bp)	21,697
GC content	32.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	25
CDS density	95%
Average CDS length (bps)	825.84
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0205031_2	K01448	103.2	2.9e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0205031_2	phrog_435	153.7	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0205031_2	UniRef90_UPI0019525F9E	398.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0205031_2	1414720.CBYM010000002_gene552	236.0	0	Ami_3	N/A
Pfam	UHGV-0205031_2	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0205031_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0205031_2	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0205031_2	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_3	phrog_199	108.5	5.8e-32	holin	lysis
UniRef90	UHGV-0205031_3	UniRef90_E7G999	192.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0205031_3	1504823.CCMM01000008_gene1022	201.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0205031_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0205031_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0205031_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0205031_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_4	phrog_18593	49.1	0.000000000000094	N/A	unknown function
eggNOG-mapper	UHGV-0205031_4	558173.CDOO_02010	54.7	0.000000512	N/A	N/A
PHROG	UHGV-0205031_5	phrog_6782	45.1	0.00000000000084	tail fiber protein	tail
eggNOG-mapper	UHGV-0205031_5	1120998.AUFC01000030_gene2248	103.0	5.68e-20	N/A	N/A
PHROG	UHGV-0205031_6	phrog_372	140.6	4.79945e-42	tail protein	tail
UniRef90	UHGV-0205031_6	UniRef90_UPI000AF23791	637.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205031_6	1507.HMPREF0262_00218	100.0	5.54e-19	tail collar domain protein	N/A
COG	UHGV-0205031_6	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0205031_6	PF05895,MF_04116,TIGR04216,COG2373	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_7	phrog_6616	43.9	0.0000000000016	tail protein	tail
eggNOG-mapper	UHGV-0205031_7	445974.CLORAM_02919	527.0	0	cellulase activity	N/A
COG	UHGV-0205031_7	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0205031_7	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_8	phrog_1194	88.0	8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0205031_8	1504823.CCMM01000008_gene1031	208.0	0	N/A	N/A
Pfam	UHGV-0205031_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0205031_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_9	phrog_1535	248.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0205031_9	UniRef90_A0A1C5TVU6	736.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0205031_9	1504823.CCMM01000008_gene1032	714.0	0	phage tail tape measure protein	N/A
COG	UHGV-0205031_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
eggNOG-mapper	UHGV-0205031_10	445974.CLORAM_02922	106.0	7.46e-29	N/A	N/A
PHROG	UHGV-0205031_11	phrog_183	66.1	4.9e-19	tail chaperone protein	tail
UniRef90	UHGV-0205031_11	UniRef90_UPI000487273D	144.0	9.08041e-42	N/A	N/A
eggNOG-mapper	UHGV-0205031_11	445974.CLORAM_02923	213.0	0	N/A	N/A
Pfam	UHGV-0205031_11	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0205031_11	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_12	phrog_158	73.4	4.2e-21	major tail protein	tail
UniRef90	UHGV-0205031_12	UniRef90_UPI00047F0744	213.0	0	tail protein	N/A
eggNOG-mapper	UHGV-0205031_12	445974.CLORAM_02924	228.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0205031_12	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0205031_12	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_13	phrog_78	44.8	0.0000000000022	tail terminator	connector
eggNOG-mapper	UHGV-0205031_13	445974.CLORAM_02925	181.0	0	N/A	N/A
structural_annotation	UHGV-0205031_13	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_14	phrog_5	85.1	8.4e-25	tail completion or Neck1 protein	connector
UniRef90	UHGV-0205031_14	UniRef90_B0N8J2	262.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0205031_14	445974.CLORAM_02926	262.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0205031_14	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0205031_14	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0205031_14	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_15	phrog_2168	106.4	1.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0205031_15	445974.CLORAM_02927	143.0	2.25609e-43	N/A	N/A
structural_annotation	UHGV-0205031_15	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_16	phrog_132	54.8	0.0000000000000014	head-tail adaptor	connector
UniRef90	UHGV-0205031_16	UniRef90_A0A1C6BLH2	99.8	4.46e-25	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0205031_16	445974.CLORAM_02928	151.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0205031_16	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0205031_16	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205031_17	UniRef90_A0A1C5TAF6	99.8	2.68e-25	Rho termination factor, N-terminal domain	N/A
structural_annotation	UHGV-0205031_17	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_18	phrog_267	185.2	0	major head protein	head and packaging
UniRef90	UHGV-0205031_18	UniRef90_A0A417IN35	518.0	0	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-0205031_18	1504823.CCMM01000008_gene1041	519.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0205031_18	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_19	phrog_172	165.1	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0205031_19	UniRef90_A0A417IN83	240.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205031_19	1504823.CCMM01000008_gene1042	233.0	0	N/A	N/A
Pfam	UHGV-0205031_19	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0205031_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_21	phrog_30609	77.9	1.2e-22	N/A	unknown function
structural_annotation	UHGV-0205031_21	PF21485	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_22	phrog_2841	288.9	0	minor head protein	head and packaging
UniRef90	UHGV-0205031_22	UniRef90_G9QX91	533.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0205031_22	445974.CLORAM_02934	533.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0205031_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0205031_22	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0205031_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205031_22	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0205031_23	phrog_64	421.5	0	portal protein	head and packaging
UniRef90	UHGV-0205031_23	UniRef90_A0A417IN69	706.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0205031_23	1504823.CCMM01000008_gene1047	710.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0205031_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0205031_23	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0205031_23	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0205031_24	K06909	371.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0205031_24	phrog_3717	169.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0205031_24	UniRef90_A0A417IN81	803.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0205031_24	1504823.CCMM01000008_gene1048	801.0	0	DNA packaging	N/A
Pfam	UHGV-0205031_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0205031_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0205031_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0205031_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0205031_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0205031_25	K07474	100.1	4.4e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0205031_25	phrog_51	118.9	3.9e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0205031_25	UniRef90_A0A417IN41	210.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0205031_25	1504823.CCMM01000008_gene1049	210.0	0	DNA packaging	N/A
Pfam	UHGV-0205031_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0205031_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0205031_25	PF03592,COG3728	N/A	N/A	N/A	N/A