UHGV-0205311 (vOTU-047924)

Viral Genome: UHGV-0205311

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0205311
vOTU ID	vOTU-047924
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252253_a1_ct7920@circular@Podoviridae__sp._ctIAN920
Associated BioSample	SAMN11252253
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9717
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.8
Jumbo phage	No

Genome content
Genome length (bp)	58,225
GC content	46.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	95%
Average CDS length (bps)	972.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0205311_1	762968.HMPREF9441_00556	68.6	0.000000000000143	Bacterial dnaA protein helix-turn-helix	N/A
structural_annotation	UHGV-0205311_1	PF08299,NF004688	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_2	phrog_16490	96.5	2.3e-28	N/A	unknown function
UniRef90	UHGV-0205311_2	UniRef90_A0A8F1B6S5	288.0	0	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0205311_2	762968.HMPREF9441_00555	119.0	1.04e-28	N/A	N/A
PHROG	UHGV-0205311_3	phrog_28898	53.5	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0205311_3	411901.BACCAC_01110	59.3	0.00000000925	N/A	N/A
structural_annotation	UHGV-0205311_3	PF21744	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_5	phrog_35482	158.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0205311_5	1227276.HMPREF9148_00147	135.0	1.44e-38	N/A	N/A
PHROG	UHGV-0205311_6	phrog_1238	73.4	2.4e-21	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0205311_6	UniRef90_D3S386	97.4	3.39e-23	Haloacid dehalogenase domain protein hydrolase type 3	N/A
eggNOG-mapper	UHGV-0205311_6	589924.Ferp_0546	97.4	5.69e-24	sugar phosphatases of the HAD superfamily	N/A
COG	UHGV-0205311_6	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
structural_annotation	UHGV-0205311_6	TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_7	phrog_19255	119.7	1.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0205311_7	36875.HQ29_02625	129.0	5.62e-36	N/A	N/A
PHROG	UHGV-0205311_8	phrog_32516	838.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0205311_8	1121098.HMPREF1534_01101	735.0	0	N/A	N/A
structural_annotation	UHGV-0205311_8	PF11134,COG3292	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_9	phrog_19255	154.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0205311_9	1121098.HMPREF1534_01102	146.0	1.82029e-42	N/A	N/A
UniRef90	UHGV-0205311_10	UniRef90_UPI001C389B65	77.8	8.94e-16	amiloride-sensitive sodium channel family protein	N/A
PHROG	UHGV-0205311_11	phrog_30264	123.8	6.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-0205311_11	1121098.HMPREF1534_01099	110.0	6.73e-29	N/A	N/A
structural_annotation	UHGV-0205311_11	NF001477	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_12	phrog_30965	100.2	1.1e-29	N/A	unknown function
UniRef90	UHGV-0205311_12	UniRef90_R7IZL2	77.8	2.8e-17	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0205311_12	679191.HMPREF9018_0437	81.3	1.54e-19	N/A	N/A
structural_annotation	UHGV-0205311_12	NF010236	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_13	phrog_824	131.4	3e-39	N/A	unknown function
UniRef90	UHGV-0205311_13	UniRef90_R6EHM3	240.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0205311_13	1122985.HMPREF1991_01533	143.0	1.7306e-42	VRR-NUC domain	N/A
Pfam	UHGV-0205311_13	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0205311_14	K00558	182.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0205311_14	phrog_116	205.9	0	DNA methyltransferase	other
UniRef90	UHGV-0205311_14	UniRef90_A0A4Q0J943	825.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0205311_14	411477.PARMER_02067	761.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0205311_14	MTase_II_00164	103.2	8.00001e-41	Type II methyltransferase	RM
Pfam	UHGV-0205311_14	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0205311_14	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0205311_14	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_18	phrog_505	85.4	7.3e-25	polynucleotide kinase	other
UniRef90	UHGV-0205311_18	UniRef90_A0A385DTG8	176.0	0	Polynucleotide kinase	N/A
eggNOG-mapper	UHGV-0205311_18	991.IW20_16505	81.6	1.98e-16	AAA domain	N/A
Pfam	UHGV-0205311_18	PF13671	N/A	N/A	AAA domain	AAA_33
COG	UHGV-0205311_18	COG4639	N/A	N/A	Predicted kinase	N/A
structural_annotation	UHGV-0205311_18	PF13671,MF_00065,TIGR03574,COG4088	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205311_21	PF13973,TIGR00405,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0205311_22	K01520	132.8	2.6e-39	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0205311_22	phrog_135	132.5	2e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205311_22	UniRef90_R6F250	280.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0205311_22	679189.HMPREF9019_0917	149.0	3.08286e-44	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-0205311_22	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0205311_22	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0205311_22	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0205311_22	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0205311_25	K03111	164.3	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0205311_25	phrog_44	134.6	6.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205311_25	UniRef90_R6EFS7	207.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0205311_25	1121918.ARWE01000001_gene2548	145.0	2.55036e-42	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0205311_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0205311_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0205311_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0205311_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0205311_25	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_26	phrog_16304	57.5	2.4e-16	N/A	unknown function
UniRef90	UHGV-0205311_26	UniRef90_R6E8M4	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205311_26	742726.HMPREF9448_02012	95.9	1.78e-20	HNH endonuclease	N/A
Pfam	UHGV-0205311_26	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0205311_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0205311_26	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0205311_27	K03466	173.7	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0205311_27	phrog_1358	131.7	1.1e-39	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0205311_27	UniRef90_UPI00101CB916	754.0	0	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0205311_27	1276221.SDIMI_v3c02110	129.0	4.62e-28	Ftsk_gamma	N/A
PADLOC	UHGV-0205311_27	SspH_00004	49.2	0.0000000000000016	SspH	SSP
Pfam	UHGV-0205311_27	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
Pfam	UHGV-0205311_27	PF17854	N/A	N/A	FtsK alpha domain	FtsK_alpha
Pfam	UHGV-0205311_27	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0205311_27	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-0205311_27	PF17854,PF12684,PF01580,MF_03030,MF_00350,NF041214,TIGR01896,COG1674	N/A	N/A	N/A	N/A
KOfam	UHGV-0205311_28	K07455	163.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0205311_28	phrog_148	190.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205311_28	UniRef90_A0A8B1Z3Y7	292.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0205311_28	742725.HMPREF9450_02076	281.0	0	RecT family	N/A
Pfam	UHGV-0205311_28	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0205311_28	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0205311_28	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0205311_28	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_30	phrog_25262	64.5	1.4e-18	N/A	unknown function
UniRef90	UHGV-0205311_30	UniRef90_UPI001F2D9A18	79.3	1.73e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0205311_30	435591.BDI_2985	62.0	0.0000000000196	Helix-turn-helix domain	N/A
Pfam	UHGV-0205311_30	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0205311_30	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0205311_30	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0205311_31	PF18963	N/A	N/A	N/A	N/A
Pfam	UHGV-0205311_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
UniRef90	UHGV-0205311_33	UniRef90_A0A1P8PNT3	116.0	9.84e-28	HTH HARE-type domain-containing protein	N/A
PHROG	UHGV-0205311_34	phrog_3364	72.9	4.3e-21	N/A	unknown function
UniRef90	UHGV-0205311_34	UniRef90_A0A3E5EX67	170.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0205311_34	742726.HMPREF9448_02520	130.0	2.46e-33	N/A	N/A
structural_annotation	UHGV-0205311_34	PF02518,MF_00637,TIGR01925,COG2172	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205311_35	UniRef90_A0A353VS37	119.0	3.49e-33	Na/Pi-cotransporter II-like protein	N/A
eggNOG-mapper	UHGV-0205311_35	742726.HMPREF9448_02519	69.3	0.0000000000000343	N/A	N/A
Pfam	UHGV-0205311_35	PF14213	N/A	N/A	N/A	DUF4325
structural_annotation	UHGV-0205311_35	PF14213	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205311_38	UniRef90_A0A1C6GMK6	68.6	0.00000000000002	CTP pyrophosphohydrolase	N/A
eggNOG-mapper	UHGV-0205311_38	411470.RUMGNA_00306	68.6	0.000000000000021	Belongs to the Nudix hydrolase family	N/A
COG	UHGV-0205311_38	COG1051	N/A	N/A	ADP-ribose pyrophosphatase YjhB, NUDIX family	N/A
KOfam	UHGV-0205311_39	K14059	157.1	0	int; integrase	N/A
PHROG	UHGV-0205311_39	phrog_1	177.7	0	integrase	integration and excision
UniRef90	UHGV-0205311_39	UniRef90_F3QYM6	266.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0205311_39	762982.HMPREF9442_03320	266.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0205311_39	PF17293	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_5
Pfam	UHGV-0205311_39	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0205311_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0205311_39	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0205311_39	PF00589,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0205311_40	908937.Prede_2356	67.4	0.000000000000358	N/A	N/A
eggNOG-mapper	UHGV-0205311_41	1227276.HMPREF9148_00167	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205311_42	1227276.HMPREF9148_00166	85.5	0.00000000000000449	N/A	N/A
PHROG	UHGV-0205311_43	phrog_14770	1332.9	0	N/A	unknown function
UniRef90	UHGV-0205311_43	UniRef90_U2KSD0	1733.0	0	Helicase protein	N/A
eggNOG-mapper	UHGV-0205311_43	1227276.HMPREF9148_00165	1733.0	0	helicase superfamily c-terminal domain	N/A
Pfam	UHGV-0205311_43	PF18827	N/A	N/A	Large polyvalent protein-associated domain 14	LPD14
Pfam	UHGV-0205311_43	PF18763	N/A	N/A	ddrB-like ParB superfamily domain	ddrB-ParB
Pfam	UHGV-0205311_43	PF18823	N/A	N/A	Inorganic Pyrophosphatase	InPase
Pfam	UHGV-0205311_43	PF18796	N/A	N/A	Large polyvalent protein-associated domain 1	LPD1
Pfam	UHGV-0205311_43	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0205311_43	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0205311_43	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
PHROG	UHGV-0205311_44	phrog_156	323.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0205311_44	1121098.HMPREF1534_01127	874.0	0	N/A	N/A
structural_annotation	UHGV-0205311_44	PF16510,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_45	phrog_22658	112.2	2.4e-33	N/A	unknown function
PHROG	UHGV-0205311_46	phrog_2	69.9	3.8e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0205311_46	UniRef90_UPI001021DF7C	922.0	0	terminase	N/A
eggNOG-mapper	UHGV-0205311_46	1227276.HMPREF9148_00162	930.0	0	Mu-like prophage FluMu protein gp28	N/A
COG	UHGV-0205311_46	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0205311_46	PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205311_47	UniRef90_A0A8B2BFQ2	127.0	5.24e-34	Rhomboid family intramembrane serine protease	N/A
eggNOG-mapper	UHGV-0205311_47	1121098.HMPREF1534_01123	125.0	2.97e-34	Rhomboid family	N/A
Pfam	UHGV-0205311_47	PF01694	N/A	N/A	Rhomboid family	Rhomboid
structural_annotation	UHGV-0205311_47	PF01694,MF_01594,TIGR04239,COG0705	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_48	phrog_27246	149.8	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0205311_48	1121098.HMPREF1534_01122	122.0	1.26e-33	N/A	N/A
structural_annotation	UHGV-0205311_48	PF14164	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_49	phrog_22323	311.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0205311_49	1227276.HMPREF9148_00160	239.0	0	N/A	N/A
PHROG	UHGV-0205311_50	phrog_26635	861.3	0	N/A	unknown function
UniRef90	UHGV-0205311_50	UniRef90_UPI0019250C39	405.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205311_50	1121098.HMPREF1534_01120	672.0	0	N/A	N/A
structural_annotation	UHGV-0205311_50	PF17236,MF_04133,TIGR01554,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_51	phrog_23743	86.1	2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0205311_51	679191.HMPREF9018_0451	99.0	7.54e-25	N/A	N/A
PHROG	UHGV-0205311_52	phrog_22135	223.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0205311_52	679191.HMPREF9018_0450	191.0	0	N/A	N/A
structural_annotation	UHGV-0205311_52	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0205311_53	phrog_23208	50.9	0.000000000000012	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0205311_53	1347393.HG726020_gene1826	67.0	0.00000000693	N/A	N/A
PHROG	UHGV-0205311_54	phrog_4636	41.9	0.00000000000029	tail spike protein	tail
PHROG	UHGV-0205311_55	phrog_20732	57.1	3.2e-16	N/A	unknown function
UniRef90	UHGV-0205311_55	UniRef90_UPI0009352414	149.0	3.46121e-43	phage holin family protein	N/A
eggNOG-mapper	UHGV-0205311_55	484018.BACPLE_02426	141.0	5.15005e-41	Bacteriophage holin family	N/A
Pfam	UHGV-0205311_55	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0205311_55	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0205311_56	K03791	222.2	0	K03791; putative chitinase	N/A
PHROG	UHGV-0205311_56	phrog_181	250.2	0	endolysin	lysis
UniRef90	UHGV-0205311_56	UniRef90_R6EHK4	357.0	0	Chinitase domain protein	N/A
eggNOG-mapper	UHGV-0205311_56	1430440.MGMSRv2_2563	190.0	0	Glycoside hydrolase, family 19	N/A
COG	UHGV-0205311_56	COG3179	N/A	N/A	Chitinase, GH19 family	N/A
structural_annotation	UHGV-0205311_56	PF00182,TIGR02282,COG3179	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205311_57	UniRef90_R6E8J1	152.0	7.00649e-45	Putative lipoprotein	N/A
eggNOG-mapper	UHGV-0205311_57	679190.HMPREF0650_1967	55.5	0.000000144	N/A	N/A