UHGV-0205317 (vOTU-114055)

Viral Genome: UHGV-0205317

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0205317
vOTU ID	vOTU-114055
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252253_a1_ct84679_vs1@Podoviridae__sp._ctmET1
Associated BioSample	SAMN11252253
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.44 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.61
Jumbo phage	No

Genome content
Genome length (bp)	19,596
GC content	54.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	98%
Average CDS length (bps)	550.29
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0205317_1	phrog_27197	113.8	9.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0205317_1	394503.Ccel_3068	51.6	0.000002	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0205317_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0205317_1	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_3	phrog_659	196.5	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205317_3	UniRef90_UPI001E5A6693	416.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205317_3	1507.HMPREF0262_00431	236.0	0	N/A	N/A
Pfam	UHGV-0205317_3	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0205317_3	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_4	phrog_72	64.9	1.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205317_4	UniRef90_UPI001F3F3E5C	145.0	4.82005e-41	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0205317_4	445972.ANACOL_01825	129.0	2.8e-35	N/A	N/A
structural_annotation	UHGV-0205317_4	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_5	phrog_7566	51.7	0.000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0205317_5	693746.OBV_24070	70.1	0.0000000000000483	N/A	N/A
KOfam	UHGV-0205317_6	K03111	130.1	2.4e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0205317_6	phrog_44	131.3	6.6e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205317_6	UniRef90_UPI001E2A5A6F	231.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0205317_6	1235835.C814_01372	122.0	5.31e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0205317_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0205317_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0205317_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0205317_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0205317_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_7	phrog_16304	142.7	2.59941e-42	N/A	unknown function
UniRef90	UHGV-0205317_7	UniRef90_UPI001E560709	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205317_7	537007.BLAHAN_04210	99.0	5.19e-22	HNH endonuclease	N/A
Pfam	UHGV-0205317_7	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0205317_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0205317_7	PF07120,COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_8	phrog_9804	167.2	0	N/A	unknown function
UniRef90	UHGV-0205317_8	UniRef90_UPI001E312ACC	363.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0205317_8	1121344.JHZO01000003_gene981	179.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0205317_8	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0205317_8	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0205317_9	K01160	64.9	2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0205317_9	phrog_34	70.3	3.2e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205317_9	UniRef90_A0A498CNH4	146.0	1.91978e-43	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0205317_9	1125712.HMPREF1316_1543	52.0	0.000000718	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0205317_9	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0205317_9	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0205317_9	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_11	phrog_1271	40.7	0.000000000035	HNH endonuclease	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0205317_11	TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_15	phrog_954	53.6	0.0000000000000037	DNA methyltransferase	other
UniRef90	UHGV-0205317_15	UniRef90_A0A375AC67	72.8	0.0000000000000019	Methyltransferase	N/A
eggNOG-mapper	UHGV-0205317_15	1280698.AUJS01000007_gene1028	98.6	1.33e-25	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0205317_15	MTase_II_00074	70.7	4.5e-20	Type II methyltransferase	RM
COG	UHGV-0205317_15	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0205317_15	PF01206,NF008242	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_17	phrog_22543	40.5	0.000000000041	N/A	unknown function
UniRef90	UHGV-0205317_17	UniRef90_A0A8D9PDK2	62.0	0.000000000246	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0205317_22	phrog_36	43.3	0.0000000000063	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0205317_22	428125.CLOLEP_01806	76.6	0.00000000000000114	N/A	N/A
Pfam	UHGV-0205317_22	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0205317_22	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_24	phrog_7339	103.6	1.7e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205317_24	UniRef90_A0A2V2GLL9	532.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0205317_24	1150474.JQJI01000006_gene784	95.1	1.92e-20	metallophosphoesterase	N/A
Pfam	UHGV-0205317_24	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0205317_24	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0205317_24	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205317_25	UniRef90_A0A8D9UHF6	149.0	9.80909e-45	N/A	N/A
eggNOG-mapper	UHGV-0205317_25	272630.MexAM1_META1p3985	54.3	0.0000000367	N/A	N/A
KOfam	UHGV-0205317_26	K06909	152.1	4.2039e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0205317_26	phrog_979	158.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0205317_26	UniRef90_A0A8D9UH35	796.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0205317_26	1232449.BAHV02000016_gene1824	469.0	0	N/A	N/A
Pfam	UHGV-0205317_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0205317_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0205317_26	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_28	phrog_156	177.0	0	portal protein	head and packaging
UniRef90	UHGV-0205317_28	UniRef90_A0A8D9UHD1	978.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0205317_28	1121091.AUMP01000003_gene2583	378.0	0	N/A	N/A
structural_annotation	UHGV-0205317_28	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205317_29	UniRef90_A0A8D9UHD6	128.0	5.95e-38	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0205317_29	PF20020	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205317_30	UniRef90_A0A8D9UHB9	416.0	0	Non-structural protein 5	N/A
PHROG	UHGV-0205317_31	phrog_1357	245.0	0	major head protein	head and packaging
UniRef90	UHGV-0205317_31	UniRef90_A0A8D9UHB3	591.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0205317_31	696281.Desru_1092	289.0	0	N/A	N/A
NCBIFam	UHGV-0205317_31	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0205317_31	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0205317_32	phrog_15239	41.8	0.000000000011	N/A	unknown function
PHROG	UHGV-0205317_34	phrog_3287	132.1	2.9e-39	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0205317_34	665956.HMPREF1032_03917	481.0	0	N/A	N/A
structural_annotation	UHGV-0205317_34	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0205317_35	K08131	208.4	0	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0205317_35	phrog_819	153.7	0	tail protein	tail
UniRef90	UHGV-0205317_35	UniRef90_A0A8D9PE13	462.0	0	Virion structural protein	N/A
Pfam	UHGV-0205317_35	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen