UHGV-0205667 (vOTU-114146)

Viral Genome: UHGV-0205667

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0205667
vOTU ID	vOTU-114146
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252271_a1_ct289671_vs1@Siphoviridae__sp._ctQ151
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.38 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.27
Jumbo phage	No

Genome content
Genome length (bp)	29,249
GC content	54.65%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	91%
Average CDS length (bps)	697.97
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0205667_1	phrog_4433	169.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0205667_1	573061.Clocel_3578	123.0	4.42e-31	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0205667_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0205667_2	UniRef90_A0A8D9PDM8	67.0	0.000000000000297	Pyocin activator protein	N/A
KOfam	UHGV-0205667_3	K22300	45.4	0.0000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0205667_3	UniRef90_A0A810PZI0	78.6	6.74e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0205667_3	693746.OBV_25500	54.3	0.00000000468	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0205667_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205667_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0205667_3	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0205667_4	K22300	47.3	0.00000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0205667_4	phrog_8	40.6	0.000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205667_4	UniRef90_A0A212J3J9	85.1	4.88e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0205667_4	1122921.KB898193_gene2516	53.5	0.000000433	transcriptional	N/A
COG	UHGV-0205667_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0205667_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205667_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0205667_5	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0205667_6	K14059	152.6	4.2039e-45	int; integrase	N/A
PHROG	UHGV-0205667_6	phrog_1	158.1	0	integrase	integration and excision
UniRef90	UHGV-0205667_6	UniRef90_A0A1C5W824	530.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0205667_6	693746.OBV_41260	297.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0205667_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0205667_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0205667_6	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205667_7	UniRef90_A0A7M1RS47	58.2	0.0000001	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0205667_7	1408437.JNJN01000043_gene801	68.6	0.00000000000485	N/A	N/A
structural_annotation	UHGV-0205667_8	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_9	phrog_16490	51.9	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0205667_9	397290.C810_05212	68.2	0.0000000000473	N/A	N/A
KOfam	UHGV-0205667_12	K01448	47.0	0.00000000000031	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0205667_12	phrog_435	78.1	1.4e-22	endolysin	lysis
UniRef90	UHGV-0205667_12	UniRef90_R6GV68	431.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0205667_12	994573.T472_0210960	148.0	8.4204e-42	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0205667_12	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0205667_12	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0205667_12	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0205667_12	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_13	phrog_918	119.2	1.1e-35	N/A	unknown function
UniRef90	UHGV-0205667_13	UniRef90_UPI001F22DD3C	126.0	4.9e-36	N/A	N/A
eggNOG-mapper	UHGV-0205667_13	226185.EF_1459	116.0	9.5e-33	N/A	N/A
Pfam	UHGV-0205667_13	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0205667_13	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_14	phrog_199	79.6	3.3e-23	holin	lysis
UniRef90	UHGV-0205667_14	UniRef90_UPI001BEFC888	258.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0205667_14	1160721.RBI_I01565	134.0	2.35e-38	Bacteriophage holin family	N/A
Pfam	UHGV-0205667_14	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0205667_14	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0205667_14	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0205667_14	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0205667_17	K21919	112.8	2.6e-33	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0205667_17	phrog_923	69.0	2.2e-31	N/A	unknown function
Pfam	UHGV-0205667_17	PF13576	N/A	N/A	Pentapeptide repeats (9 copies)	Pentapeptide_3
Pfam	UHGV-0205667_17	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0205667_17	PF13599,NF000421,COG1357	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205667_18	UniRef90_A0A847E3M6	50.4	0.000000277	Ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-0205667_18	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
COG	UHGV-0205667_18	COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205667_18	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_19	phrog_26878	81.1	6.1e-24	virion structural protein	head and packaging
UniRef90	UHGV-0205667_19	UniRef90_UPI00026C8EE4	144.0	6.37e-34	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-0205667_19	1423755.BAML01000004_gene368	95.9	1.63e-18	lipolytic protein G-D-S-L family	N/A
COG	UHGV-0205667_19	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0205667_20	phrog_30034	104.6	1.2e-30	N/A	unknown function
UniRef90	UHGV-0205667_20	UniRef90_A0A3D1XGA4	210.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0205667_20	1122971.BAME01000151_gene6566	103.0	5.39e-25	N/A	N/A
Pfam	UHGV-0205667_20	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0205667_21	PF10651,TIGR04339	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_22	phrog_372	233.4	0	tail protein	tail
UniRef90	UHGV-0205667_22	UniRef90_UPI001373A0FD	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205667_22	1235802.C823_05263	229.0	0	N/A	N/A
Pfam	UHGV-0205667_22	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0205667_22	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0205667_22	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_23	phrog_6616	113.9	1.4e-34	tail protein	tail
UniRef90	UHGV-0205667_23	UniRef90_R5GWP5	73.2	0.000000000478	KID repeat family protein	N/A
eggNOG-mapper	UHGV-0205667_23	469596.HMPREF9488_01318	291.0	0	N/A	N/A
structural_annotation	UHGV-0205667_23	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_24	phrog_1194	119.3	1.6e-35	N/A	unknown function
UniRef90	UHGV-0205667_24	UniRef90_A0A0B3VTI7	104.0	1.11e-26	N/A	N/A
eggNOG-mapper	UHGV-0205667_24	1414720.CBYM010000002_gene561	114.0	2.91e-31	N/A	N/A
Pfam	UHGV-0205667_24	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0205667_24	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_25	phrog_1535	141.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0205667_25	UniRef90_A0A1C6L0H4	553.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0205667_25	1121866.AUGK01000003_gene1437	274.0	0	phage tail tape measure protein	N/A
COG	UHGV-0205667_25	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0205667_25	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0205667_26	1211844.CBLM010000023_gene987	53.5	0.0000000989	N/A	N/A
UniRef90	UHGV-0205667_27	UniRef90_UPI00164D364F	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205667_27	469596.HMPREF9488_01311	80.1	4.91e-18	N/A	N/A
Pfam	UHGV-0205667_27	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0205667_27	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_28	phrog_158	56.8	4.2e-16	major tail protein	tail
UniRef90	UHGV-0205667_28	UniRef90_A0A1C6L0H9	202.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0205667_28	1232453.BAIF02000058_gene1634	104.0	6.84e-27	N/A	N/A
Pfam	UHGV-0205667_28	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0205667_28	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205667_29	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0205667_30	1298920.KI911353_gene2654	57.4	0.0000000724	N/A	N/A
eggNOG-mapper	UHGV-0205667_31	1121866.AUGK01000003_gene1432	72.8	0.000000000000011	N/A	N/A
UniRef90	UHGV-0205667_32	UniRef90_UPI001898B4B4	142.0	7.66931e-42	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0205667_32	1298920.KI911353_gene2658	59.7	0.000000000346	N/A	N/A
Pfam	UHGV-0205667_32	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0205667_32	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_33	phrog_1328	128.3	4.5e-38	major head protein	head and packaging
UniRef90	UHGV-0205667_33	UniRef90_UPI00164DD2D5	597.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205667_33	665956.HMPREF1032_03619	239.0	0	N/A	N/A
Pfam	UHGV-0205667_33	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0205667_33	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_35	phrog_64	230.7	0	portal protein	head and packaging
UniRef90	UHGV-0205667_35	UniRef90_A0A6I2QXE1	684.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0205667_35	1123263.AUKY01000015_gene1609	410.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0205667_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0205667_35	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0205667_36	phrog_38	158.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0205667_36	UniRef90_A0A6I2QXZ5	893.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0205667_36	1298920.KI911353_gene2682	298.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0205667_36	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0205667_36	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205667_36	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205667_37	PF19190,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0205667_38	K14060	150.3	1.26117e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0205667_38	phrog_125	193.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205667_38	UniRef90_R7EUM7	276.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-0205667_38	693746.OBV_34630	231.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0205667_38	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0205667_38	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0205667_38	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A