UHGV-0205889 (vOTU-076035)

Viral Genome: UHGV-0205889

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0205889
vOTU ID	vOTU-076035
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781757_a1_ct155461_vs1@Podoviridae__sp._ctzJa1
Associated BioSample	SAMN09781757
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.87 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.91
Jumbo phage	No

Genome content
Genome length (bp)	39,334
GC content	55.77%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	95%
Average CDS length (bps)	676.75
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0205889_1	K08640	98.5	1.3e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0205889_1	phrog_894	99.2	4.5e-29	endolysin	lysis
UniRef90	UHGV-0205889_1	UniRef90_UPI001C035E39	345.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0205889_1	1235797.C816_04171	262.0	0	Peptidase M15	N/A
Pfam	UHGV-0205889_1	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0205889_1	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205889_1	PF08291,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_2	phrog_12105	107.0	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0205889_2	1226322.HMPREF1545_03850	70.9	0.0000000000000454	N/A	N/A
PHROG	UHGV-0205889_3	phrog_511	233.4	0	internal virion protein	head and packaging
UniRef90	UHGV-0205889_3	UniRef90_A0A8D9UH72	537.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0205889_3	1226322.HMPREF1545_00785	346.0	0	N/A	N/A
structural_annotation	UHGV-0205889_3	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
Pfam	UHGV-0205889_4	PF07889	N/A	N/A	N/A	DUF1664
eggNOG-mapper	UHGV-0205889_5	1519439.JPJG01000060_gene1904	96.3	3.48e-18	N/A	N/A
PHROG	UHGV-0205889_6	phrog_22978	1174.2	0	N/A	unknown function
UniRef90	UHGV-0205889_6	UniRef90_A0A2V2FDI6	452.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0205889_6	1410650.JHWL01000003_gene2814	325.0	0	N/A	N/A
Pfam	UHGV-0205889_6	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
UniRef90	UHGV-0205889_7	UniRef90_A0A8D9PDQ3	78.2	1.78e-17	ECF sigma factor	N/A
structural_annotation	UHGV-0205889_7	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_10	phrog_16490	54.9	6.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0205889_10	641112.ACOK01000103_gene525	129.0	1.66e-34	N/A	N/A
structural_annotation	UHGV-0205889_11	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0205889_12	1408437.JNJN01000043_gene801	68.9	0.00000000000367	N/A	N/A
KOfam	UHGV-0205889_13	K14059	223.9	0	int; integrase	N/A
PHROG	UHGV-0205889_13	phrog_1	193.8	0	integrase	integration and excision
UniRef90	UHGV-0205889_13	UniRef90_UPI001C124E9B	401.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0205889_13	1226322.HMPREF1545_00144	360.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0205889_13	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0205889_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0205889_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0205889_13	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0205889_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0205889_14	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_16	phrog_8	43.9	0.0000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205889_16	UniRef90_A0A1I4HDU2	65.5	0.0000000000565	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0205889_16	1260356.D920_01208	57.8	0.0000000101	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0205889_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205889_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0205889_17	phrog_8	64.2	3.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205889_17	UniRef90_A0A847W1V2	85.9	1.05e-20	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0205889_17	665950.HMPREF1025_02561	68.6	0.0000000000000102	sequence-specific DNA binding	N/A
Pfam	UHGV-0205889_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205889_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0205889_17	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205889_18	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205889_21	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_23	phrog_4973	49.7	0.000000000000062	N/A	unknown function
UniRef90	UHGV-0205889_23	UniRef90_A0A3D3Y5F2	66.6	0.000000000000531	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0205889_23	935261.JAGL01000009_gene1175	46.2	0.00000867	Helix-turn-helix domain	N/A
Pfam	UHGV-0205889_23	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0205889_23	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_24	phrog_253	78.3	1.2e-22	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205889_24	UniRef90_A0A1C5N4H2	147.0	1.75022e-42	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0205889_24	1410670.JHXF01000015_gene2268	91.7	2.54e-21	Siphovirus Gp157	N/A
Pfam	UHGV-0205889_24	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0205889_24	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_25	phrog_155	126.2	2.6e-37	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205889_25	UniRef90_A0A3D1PJF8	230.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0205889_25	1304866.K413DRAFT_1196	201.0	0	ERF superfamily	N/A
Pfam	UHGV-0205889_25	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0205889_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0205889_25	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_26	phrog_72	68.5	8.7e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205889_26	UniRef90_A0A8D9PDS2	181.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0205889_26	445972.ANACOL_01825	154.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0205889_26	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_27	phrog_7370	58.2	1.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205889_27	UniRef90_UPI001C122365	136.0	2.17e-39	HNH endonuclease	N/A
Pfam	UHGV-0205889_27	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0205889_28	K03111	152.5	4.2039e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0205889_28	phrog_44	148.0	5.32493e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205889_28	UniRef90_A0A1Q6RGI0	204.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0205889_28	1226322.HMPREF1545_04080	200.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0205889_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0205889_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0205889_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0205889_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0205889_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_29	phrog_15768	102.8	1.8e-32	N/A	unknown function
UniRef90	UHGV-0205889_29	UniRef90_A0A8D9PDU3	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205889_29	203119.Cthe_2466	82.0	8.73e-16	N/A	N/A
AcrCatalog	UHGV-0205889_29	cluster_38323	83.2	1.65e-21	NA	N/A
Pfam	UHGV-0205889_29	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0205889_29	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0205889_32	K01160	58.3	2.4e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0205889_32	phrog_140	114.0	1.2e-33	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205889_32	UniRef90_A0A843H433	108.0	9.51e-28	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0205889_32	857293.CAAU_0790	95.9	1.46e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0205889_32	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0205889_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0205889_32	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0205889_34	K17398	79.3	2.3e-35	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-0205889_34	phrog_116	60.5	1.1e-27	DNA methyltransferase	other
UniRef90	UHGV-0205889_34	UniRef90_A0A1Q6RQI3	388.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0205889_34	1235797.C816_01614	288.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
Pfam	UHGV-0205889_34	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0205889_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0205889_34	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
Pfam	UHGV-0205889_35	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0205889_37	phrog_38832	83.2	2.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0205889_37	665956.HMPREF1032_00143	87.0	4.24e-19	N/A	N/A
structural_annotation	UHGV-0205889_37	PF11717,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205889_38	UniRef90_A0A8D9PDK2	50.4	0.00000945	Zinc-ribbon containing domain	N/A
KOfam	UHGV-0205889_41	K02647	41.7	0.000000000012	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-0205889_41	UniRef90_UPI00164DE10C	53.9	0.0000000379	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0205889_41	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-0205889_41	COG2508	N/A	N/A	DNA-binding transcriptional regulator, PucR/PutR family	N/A
structural_annotation	UHGV-0205889_41	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_42	phrog_8	45.6	0.0000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205889_42	UniRef90_A0A1C6J963	110.0	2.64e-30	Helix-turn-helix	N/A
Pfam	UHGV-0205889_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205889_42	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0205889_42	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_43	phrog_872	157.3	0	N/A	unknown function
UniRef90	UHGV-0205889_43	UniRef90_A0A8J6M9F5	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205889_43	1519439.JPJG01000060_gene1880	149.0	1.54003e-42	N/A	N/A
Pfam	UHGV-0205889_43	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0205889_43	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0205889_43	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_44	phrog_606	78.9	6.9e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0205889_44	UniRef90_UPI00195648BB	166.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0205889_44	397290.C810_05185	133.0	1.29e-37	DNA-packaging protein gp3	N/A
Pfam	UHGV-0205889_44	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0205889_44	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0205889_45	K06909	98.2	1.1e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0205889_45	phrog_979	196.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0205889_45	UniRef90_UPI001BB47C17	806.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0205889_45	748224.HMPREF9436_01395	625.0	0	Terminase-like family	N/A
Pfam	UHGV-0205889_45	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0205889_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0205889_45	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_46	phrog_156	318.5	0	portal protein	head and packaging
UniRef90	UHGV-0205889_46	UniRef90_A0A8D9UH10	625.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0205889_46	748224.HMPREF9436_02547	508.0	0	N/A	N/A
structural_annotation	UHGV-0205889_46	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0205889_47	K07584	56.1	4.3e-16	N/A	N/A
PHROG	UHGV-0205889_47	phrog_4478	53.0	0.0000000000000029	peptidase	other
UniRef90	UHGV-0205889_47	UniRef90_UPI0005504E05	65.5	0.0000000000162	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0205889_47	555079.Toce_0764	64.7	0.00000000000599	Cysteine protease Prp	N/A
Pfam	UHGV-0205889_47	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0205889_47	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205889_47	PF04327,NF011125,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_48	phrog_13908	241.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0205889_48	1410650.JHWL01000003_gene2831	103.0	8.3e-23	N/A	N/A
PHROG	UHGV-0205889_49	phrog_1357	269.7	0	major head protein	head and packaging
UniRef90	UHGV-0205889_49	UniRef90_UPI001D02EBA7	465.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0205889_49	1203606.HMPREF1526_02746	358.0	0	N/A	N/A
Pfam	UHGV-0205889_49	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0205889_49	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0205889_49	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205889_51	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_52	phrog_37900	73.8	6.5e-26	N/A	unknown function
UniRef90	UHGV-0205889_52	UniRef90_UPI00051B4A1C	294.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205889_52	1519439.JPJG01000060_gene1894	294.0	0	N/A	N/A
Pfam	UHGV-0205889_52	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0205889_52	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0205889_52	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0205889_53	phrog_10993	223.0	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0205889_53	UniRef90_K1UI43	374.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205889_53	1121334.KB911071_gene1970	235.0	0	N/A	N/A
Pfam	UHGV-0205889_53	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0205889_53	PF19789	N/A	N/A	N/A	N/A