UHGV-0205971 (vOTU-081398)

Viral Genome: UHGV-0205971

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0205971
vOTU ID	vOTU-081398
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SRS044535_a1_ct20011_vs1@Siphoviridae__sp._ctCcA1
Associated Biosample	SAMN00064544
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	91.72 (High-quality)
Trimmed?	No
CheckV Viral Markers	24
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9782
Viral Hallmark Genes (geNomad)	11
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	55.33
Jumbo Phage?	No

Genome Content
Length (bps)	34,136
GC Content	38.75%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	60
CDS Density	93%
Average CDS Length (bps)	526.95
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0205971_1	K03497	55.2	0.0000000000000013	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0205971_1	phrog_940	387.9	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205971_1	UniRef90_G9WTK6	435.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0205971_1	1232449.BAHV02000018_gene1534	402.0	0	N/A	N/A
PADLOC	UHGV-0205971_1	MTase_II_00015	101.3	1.3e-29	Type II methyltransferase	RM
Pfam	UHGV-0205971_1	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0205971_1	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0205971_1	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0205971_1	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_2	phrog_5057	138.2	5.29999e-41	N/A	unknown function
PHROG	UHGV-0205971_3	phrog_13845	182.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0205971_3	1399942.U3PDR2_9CAUD	163.0	0	N/A	N/A
structural_annotation	UHGV-0205971_3	PF05119,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_4	phrog_314	81.4	1.4e-23	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205971_4	UniRef90_A0A075KJD6	164.0	0	Putative truncated GIY-YIG endonuclease	N/A
eggNOG-mapper	UHGV-0205971_4	1399942.U3PCR9_9CAUD	161.0	0	NUMOD3 motif (2 copies)	N/A
structural_annotation	UHGV-0205971_4	PF19835,PF07460,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_5	phrog_9	281.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0205971_5	UniRef90_A0A075KKZ0	885.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0205971_5	508419.F8J159_9CAUD	893.0	0	Phage Terminase	N/A
Pfam	UHGV-0205971_5	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0205971_5	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0205971_5	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_6	phrog_12	181.5	0	portal protein	head and packaging
UniRef90	UHGV-0205971_6	UniRef90_A0A843HZ12	552.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0205971_6	1399942.U3PFW0_9CAUD	525.0	0	Phage portal protein	N/A
Pfam	UHGV-0205971_6	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0205971_6	TIGR01537.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0205971_6	PF04860,PF08184,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0205971_7	K06904	101.4	1.1e-29	N/A	N/A
PHROG	UHGV-0205971_7	phrog_80	122.3	5.6e-36	head maturation protease	head and packaging
UniRef90	UHGV-0205971_7	UniRef90_A0A843HVM4	236.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0205971_7	508419.F8J161_9CAUD	207.0	0	peptidase activity	N/A
Pfam	UHGV-0205971_7	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0205971_7	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
structural_annotation	UHGV-0205971_7	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_8	phrog_10	191.2	0	major head protein	head and packaging
UniRef90	UHGV-0205971_8	UniRef90_A0A075KK19	487.0	0	Putative major head protein	N/A
eggNOG-mapper	UHGV-0205971_8	1399942.U3PDR8_9CAUD	496.0	0	peptidase activity	N/A
Pfam	UHGV-0205971_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0205971_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0205971_8	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_9	phrog_6865	64.9	9.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0205971_9	1399942.U3PBG9_9CAUD	53.5	0.00000000436	N/A	N/A
structural_annotation	UHGV-0205971_9	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_10	phrog_40	48.9	0.000000000000084	head-tail adaptor Ad1	connector
UniRef90	UHGV-0205971_10	UniRef90_A0A6P1MNU9	119.0	2.91e-33	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0205971_10	508419.F8J164_9CAUD	119.0	7.35e-34	N/A	N/A
Pfam	UHGV-0205971_10	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0205971_10	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0205971_10	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_11	phrog_25	51.0	0.000000000000024	head closure Hc1	connector
UniRef90	UHGV-0205971_11	UniRef90_A0A843I196	139.0	1.15999e-40	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0205971_11	508419.F8J165_9CAUD	116.0	2.21e-32	Phage head-tail joining protein	N/A
Pfam	UHGV-0205971_11	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0205971_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0205971_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205971_12	UniRef90_A0A843HUI9	142.0	8.96004e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0205971_12	508419.F8J166_9CAUD	142.0	1.65003e-41	N/A	N/A
Pfam	UHGV-0205971_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0205971_12	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_13	phrog_78	52.1	0.000000000000013	tail terminator	connector
UniRef90	UHGV-0205971_13	UniRef90_UPI0005D10765	63.9	0.0000000000719	N/A	N/A
eggNOG-mapper	UHGV-0205971_13	1399942.U3PDS3_9CAUD	130.0	8.94e-38	N/A	N/A
structural_annotation	UHGV-0205971_13	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_14	phrog_88	118.3	5.1e-35	major tail protein	tail
UniRef90	UHGV-0205971_14	UniRef90_A0A075KJR8	233.0	0	Putative major tail protein	N/A
eggNOG-mapper	UHGV-0205971_14	1399942.U3PBH4_9CAUD	235.0	0	N/A	N/A
NCBIFam	UHGV-0205971_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0205971_14	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_15	phrog_2115	50.4	0.000000000000046	tail protein	tail
eggNOG-mapper	UHGV-0205971_15	1399942.U3PCS7_9CAUD	128.0	5.43e-37	N/A	N/A
structural_annotation	UHGV-0205971_15	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_16	phrog_6900	255.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0205971_16	536233.CLO_1577	264.0	0	tape measure	N/A
COG	UHGV-0205971_16	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0205971_17	phrog_33	67.5	3.1e-19	distal tail protein Dit	tail
UniRef90	UHGV-0205971_17	UniRef90_A0A075KJA3	285.0	0	Putative tail component	N/A
eggNOG-mapper	UHGV-0205971_17	1399942.U3PIW9_9CAUD	288.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0205971_17	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0205971_18	1399942.U3PDS7_9CAUD	114.0	1.97e-31	N/A	N/A
structural_annotation	UHGV-0205971_18	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0205971_20	910314.HMPREF9220_1078	57.4	0.00000000446	N/A	N/A
structural_annotation	UHGV-0205971_20	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205971_23	NF033677	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0205971_26	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0205971_26	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_27	phrog_1067	337.8	0	minor head protein	head and packaging
UniRef90	UHGV-0205971_27	UniRef90_A0A075KQI0	583.0	0	Putative antireceptor	N/A
eggNOG-mapper	UHGV-0205971_27	1399942.U3PFX4_9CAUD	580.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0205971_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0205971_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0205971_27	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_28	phrog_372	283.1	0	tail protein	tail
UniRef90	UHGV-0205971_28	UniRef90_A0A4D6B7C6	175.0	4.34403e-44	Capsid and scaffold protein	N/A
eggNOG-mapper	UHGV-0205971_28	1123315.AUIP01000001_gene1436	175.0	7.00649e-45	N/A	N/A
Pfam	UHGV-0205971_28	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0205971_28	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
KOfam	UHGV-0205971_29	K06400	298.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0205971_29	phrog_95	328.3	0	integrase	integration and excision
UniRef90	UHGV-0205971_29	UniRef90_UPI0007748959	254.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0205971_29	1235799.C818_04182	229.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0205971_29	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0205971_29	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0205971_29	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0205971_29	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0205971_29	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0205971_30	K14056	63.2	4.4e-18	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-0205971_30	phrog_1373	52.3	0.0000000000000078	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205971_30	UniRef90_R6AML4	85.1	3.88e-19	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0205971_30	224719.Abm4_1037	62.8	0.0000000000302	IrrE N-terminal-like domain	N/A
PADLOC	UHGV-0205971_30	retron_type_VI_hth_cluster2_1	59.2	9.1e-17	N/A	Retron
Pfam	UHGV-0205971_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205971_30	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0205971_30	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_32	phrog_2324	91.3	7.2e-27	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205971_32	UniRef90_A0A366DNY1	75.1	0.000000000000411	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0205971_32	508419.F8J181_9CAUD	70.1	0.00000000000444	N/A	N/A
Pfam	UHGV-0205971_32	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0205971_32	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_34	phrog_6244	108.7	4.7e-32	N/A	unknown function
UniRef90	UHGV-0205971_34	UniRef90_A0A7W3SYY9	54.3	0.000000239	Putative phage-related endonuclease	N/A
eggNOG-mapper	UHGV-0205971_34	1399942.U3PIX9_9CAUD	89.0	1.16e-21	N/A	N/A
structural_annotation	UHGV-0205971_34	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_35	phrog_298	64.8	5.7e-19	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205971_35	UniRef90_A0A843HPP6	150.0	9.59889e-43	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0205971_35	1399942.U3PDT7_9CAUD	210.0	0	nuclease activity	N/A
structural_annotation	UHGV-0205971_35	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-0205971_36	K03111	139.0	4.90006e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0205971_36	phrog_44	146.2	1.59748e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205971_36	UniRef90_A0A4S2F9D9	133.0	2.36e-37	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0205971_36	1235796.C815_00133	129.0	1.12e-36	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0205971_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0205971_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0205971_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0205971_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0205971_36	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_37	phrog_72	60.0	4.6e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0205971_37	1304866.K413DRAFT_1197	80.9	4.49e-17	N/A	N/A
structural_annotation	UHGV-0205971_37	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_38	phrog_7566	72.4	4.3e-21	N/A	unknown function
UniRef90	UHGV-0205971_38	UniRef90_A0A7X5CEC2	61.2	0.000000000457	Phosphoenolpyruvate carboxykinase	N/A
PHROG	UHGV-0205971_39	phrog_190	128.4	4.5e-38	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205971_39	UniRef90_A0A7X9CKX4	127.0	1.82e-35	N/A	N/A
eggNOG-mapper	UHGV-0205971_39	293826.Amet_2598	117.0	3.1e-32	N/A	N/A
Pfam	UHGV-0205971_39	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0205971_39	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_41	phrog_678	68.2	1.6e-19	replication initiation O-like	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0205971_41	536233.CLO_1408	69.7	0.0000000000554	Helix-turn-helix domain	N/A
COG	UHGV-0205971_41	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-0205971_41	PF02002,MF_01909,TIGR01610,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0205971_43	K02315	196.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0205971_43	phrog_50	182.3	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205971_43	UniRef90_UPI00189AC967	219.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0205971_43	1392493.JIAB01000001_gene1377	209.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0205971_43	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0205971_43	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0205971_43	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
PHROG	UHGV-0205971_48	phrog_24490	41.8	0.000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0205971_48	1235793.C809_02212	49.3	0.00000245	N/A	N/A
eggNOG-mapper	UHGV-0205971_52	1123263.AUKY01000015_gene1588	53.9	0.0000000675	N/A	N/A
structural_annotation	UHGV-0205971_55	TIGR01439	N/A	N/A	N/A	N/A
PHROG	UHGV-0205971_57	phrog_881	66.5	2.1e-19	holin	lysis
UniRef90	UHGV-0205971_57	UniRef90_A0A087BZS5	65.1	0.00000000000515	Holin	N/A
eggNOG-mapper	UHGV-0205971_57	1437603.BMON_1122	65.1	0.000000000000864	Putative phage holin Dp-1	N/A
Pfam	UHGV-0205971_57	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0205971_57	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0205971_59	K07273	202.6	0	acm; lysozyme	N/A
PHROG	UHGV-0205971_59	phrog_291	211.5	0	endolysin	lysis
UniRef90	UHGV-0205971_59	UniRef90_A0A3F3PBL6	320.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0205971_59	1235798.C817_00299	264.0	0	family 25	N/A
Pfam	UHGV-0205971_59	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0205971_59	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0205971_59	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0205971_59	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0205971_59	PF01183,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0205971_60	K07451	49.6	0.000000000000073	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0205971_60	phrog_144	61.1	1.9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205971_60	UniRef90_I2E873	144.0	2.72973e-42	HNHc domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0205971_60	508419.F8J1A6_9CAUD	122.0	3.39e-34	HNH endonuclease	N/A
Pfam	UHGV-0205971_60	PF13391	N/A	N/A	HNH endonuclease	HNH_2