UHGV-0206257 (vOTU-061279)

Viral Genome: UHGV-0206257

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0206257
vOTU ID	vOTU-061279
Representative Genome?	Yes
Source	CHVD
Original genome ID	SRS075984_a1_ct24454_vs1@Siphoviridae__sp._ctlJo1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9692
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.32
Jumbo phage	No

Genome content
Genome length (bp)	26,663
GC content	39.51%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	94%
Average CDS length (bps)	599.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0206257_1	K14059	216.5	0	int; integrase	N/A
PHROG	UHGV-0206257_1	phrog_1	205.8	0	integrase	integration and excision
UniRef90	UHGV-0206257_1	UniRef90_A0A373XME4	782.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0206257_1	428125.CLOLEP_02743	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0206257_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0206257_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0206257_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206257_2	UniRef90_A0A374DTF3	103.0	4.07e-25	N/A	N/A
PHROG	UHGV-0206257_3	phrog_1914	147.8	6.16571e-44	N/A	unknown function
UniRef90	UHGV-0206257_3	UniRef90_A0A373XNL4	359.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0206257_3	1160721.RBI_I01604	173.0	0	N/A	N/A
Pfam	UHGV-0206257_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0206257_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0206257_3	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206257_4	UniRef90_A0A373XLN2	158.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0206257_4	1408823.AXUS01000025_gene2653	58.9	0.00000000852	N/A	N/A
structural_annotation	UHGV-0206257_4	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206257_5	UniRef90_A0A374DVN3	161.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0206257_5	1219626.HMPREF1639_07045	47.8	0.00000322	N/A	N/A
UniRef90	UHGV-0206257_6	UniRef90_A0A2N0ULT9	137.0	4.22001e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0206257_6	1283300.ATXB01000001_gene1737	47.0	0.0000034	DNA excision	N/A
Pfam	UHGV-0206257_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0206257_6	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0206257_6	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0206257_6	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0206257_9	K03497	154.6	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0206257_9	phrog_6218	249.3	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206257_9	UniRef90_UPI000E47CAB6	416.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0206257_9	1160721.RBI_I01596	218.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0206257_9	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0206257_9	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0206257_9	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0206257_9	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_11	phrog_2118	122.4	3.7e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206257_11	UniRef90_A0A374DVG7	242.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0206257_11	610130.Closa_0730	149.0	4.2039e-45	HNH endonuclease	N/A
Pfam	UHGV-0206257_11	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0206257_11	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0206257_11	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_12	phrog_8684	85.6	2.9e-25	N/A	unknown function
UniRef90	UHGV-0206257_12	UniRef90_A0A374DV44	161.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0206257_12	411473.RUMCAL_00283	72.4	0.000000000000113	YopX protein	N/A
Pfam	UHGV-0206257_12	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0206257_12	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0206257_12	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_15	phrog_3584	146.7	1.49939e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0206257_15	1235800.C819_00515	73.6	0.00000000000104	N/A	N/A
structural_annotation	UHGV-0206257_15	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206257_16	394503.Ccel_3053	55.5	0.0000000703	N/A	N/A
structural_annotation	UHGV-0206257_16	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_17	phrog_119	71.9	8.9e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206257_17	UniRef90_A0A373XNZ9	230.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0206257_17	500633.CLOHIR_00362	119.0	8.27e-34	HNH endonuclease	N/A
Pfam	UHGV-0206257_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0206257_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0206257_18	phrog_1066	59.6	5.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0206257_18	931276.Cspa_c10130	67.0	0.00000000000576	N/A	N/A
PHROG	UHGV-0206257_19	phrog_9	311.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0206257_19	UniRef90_A0A373XNY0	1055.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0206257_19	411468.CLOSCI_00551	679.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0206257_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0206257_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0206257_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0206257_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_20	phrog_12	174.6	0	portal protein	head and packaging
UniRef90	UHGV-0206257_20	UniRef90_A0A373XNZ6	785.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0206257_20	411468.CLOSCI_00550	403.0	0	Phage portal protein	N/A
Pfam	UHGV-0206257_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0206257_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0206257_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0206257_21	K01358	152.5	4.2039e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0206257_21	phrog_94	239.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0206257_21	UniRef90_A0A373XPG0	466.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0206257_21	1382358.JHVN01000024_gene1706	251.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-0206257_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0206257_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0206257_21	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_22	phrog_10	128.5	6.6e-38	major head protein	head and packaging
UniRef90	UHGV-0206257_22	UniRef90_A0A373XLR3	731.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0206257_22	411468.CLOSCI_00548	377.0	0	Phage capsid family	N/A
Pfam	UHGV-0206257_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0206257_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0206257_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_23	phrog_5223	55.1	0.000000000000001	neck protein	connector
UniRef90	UHGV-0206257_23	UniRef90_A0A174XIL0	94.7	2.44e-23	N/A	N/A
eggNOG-mapper	UHGV-0206257_23	411468.CLOSCI_00547	92.0	4.74e-23	N/A	N/A
PHROG	UHGV-0206257_24	phrog_1951	97.8	6.1e-29	head-tail adaptor	connector
UniRef90	UHGV-0206257_24	UniRef90_A0A373XMG4	218.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0206257_24	1536769.P40081_01090	66.6	0.000000000000798	head-tail adaptor	N/A
NCBIFam	UHGV-0206257_24	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0206257_24	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0206257_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206257_25	UniRef90_UPI001A9B6FBF	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0206257_25	1414720.CBYM010000040_gene1650	132.0	1.1e-37	N/A	N/A
structural_annotation	UHGV-0206257_25	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206257_26	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_27	phrog_885	136.1	2.1e-40	major tail protein	tail
UniRef90	UHGV-0206257_27	UniRef90_Q894J4	164.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-0206257_27	1321814.HMPREF9089_00935	174.0	0	N/A	N/A
structural_annotation	UHGV-0206257_27	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_28	phrog_1021	51.3	9.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0206257_28	1321778.HMPREF1982_03556	50.1	0.000004	N/A	N/A
PHROG	UHGV-0206257_30	phrog_23464	256.9	0	N/A	unknown function
UniRef90	UHGV-0206257_30	UniRef90_A0A1C6JGQ9	179.0	1.68156e-44	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0206257_30	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-0206257_30	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0206257_30	COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206257_31	UniRef90_A0A1G5CPA2	115.0	1.17e-27	Phage-related protein	N/A
eggNOG-mapper	UHGV-0206257_31	1246.JMEA01000006_gene51	68.6	0.0000000000632	phage tail	N/A
COG	UHGV-0206257_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0206257_31	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_32	phrog_1067	139.6	1.90002e-41	minor head protein	head and packaging
UniRef90	UHGV-0206257_32	UniRef90_A0A348ZBV6	177.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0206257_32	1160721.RBI_I01574	122.0	1.81e-27	Prophage endopeptidase tail	N/A
Pfam	UHGV-0206257_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0206257_32	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0206257_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0206257_32	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206257_33	UniRef90_A0A374N9Y2	318.0	0	N/A	N/A
Pfam	UHGV-0206257_33	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0206257_33	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206257_35	UniRef90_A0A374MYZ3	179.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0206257_35	1007096.BAGW01000032_gene1580	87.4	2.12e-21	N/A	N/A
PHROG	UHGV-0206257_36	phrog_881	87.2	9.1e-26	holin	lysis
UniRef90	UHGV-0206257_36	UniRef90_A0A4Q7P349	103.0	1.59e-27	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0206257_36	742740.HMPREF9474_02251	106.0	1.74e-29	Putative phage holin Dp-1	N/A
Pfam	UHGV-0206257_36	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0206257_36	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0206257_37	phrog_918	114.6	3.3e-34	N/A	unknown function
UniRef90	UHGV-0206257_37	UniRef90_UPI00164AB9AF	124.0	1.54e-35	N/A	N/A
eggNOG-mapper	UHGV-0206257_37	1504823.CCMM01000008_gene1021	117.0	2.22e-33	N/A	N/A
Pfam	UHGV-0206257_37	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0206257_37	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0206257_38	K01448	57.5	2.1e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0206257_38	phrog_435	81.0	1.9e-23	endolysin	lysis
UniRef90	UHGV-0206257_38	UniRef90_A0A373KFY8	335.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0206257_38	1384066.JAGT01000001_gene130	73.9	0.00000000000222	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0206257_38	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0206257_38	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
Pfam	UHGV-0206257_38	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0206257_38	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0206257_39	phrog_13503	49.7	0.000000000000053	N/A	unknown function
UniRef90	UHGV-0206257_39	UniRef90_UPI000F0605D3	305.0	0	HEPN domain-containing protein	N/A
eggNOG-mapper	UHGV-0206257_39	1095750.HMPREF9970_1930	261.0	0	N/A	N/A
Pfam	UHGV-0206257_39	PF18735	N/A	N/A	RiboL-PSP-HEPN	HEPN_RiboL-PSP
structural_annotation	UHGV-0206257_39	PF18735	N/A	N/A	N/A	N/A
KOfam	UHGV-0206257_40	K06926	335.3	0	N/A	N/A
PHROG	UHGV-0206257_40	phrog_5836	166.3	0	N/A	unknown function
UniRef90	UHGV-0206257_40	UniRef90_UPI000F065CAB	651.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0206257_40	575593.HMPREF0491_00380	558.0	0	AAA domain, putative AbiEii toxin, Type IV TA system	N/A
PADLOC	UHGV-0206257_40	AbiLi-1	276.0	0	AbiLi	Abi
Pfam	UHGV-0206257_40	PF13304	N/A	N/A	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
COG	UHGV-0206257_40	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0206257_40	PF13304,MF_00365,NF041760,COG4637	N/A	N/A	N/A	N/A
KOfam	UHGV-0206257_41	K22300	50.8	0.000000000000037	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0206257_41	phrog_8	59.0	1.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206257_41	UniRef90_A0A374N9T4	103.0	4.95e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0206257_41	935845.JADQ01000015_gene3206	77.0	3.65e-17	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0206257_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0206257_41	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0206257_41	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0206257_42	K04763	57.5	2.7e-16	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0206257_42	phrog_1	49.6	0.00000000000008	integrase	integration and excision
UniRef90	UHGV-0206257_42	UniRef90_A0A2A7RCD2	59.7	0.0000000000894	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0206257_42	610130.Closa_3343	73.6	0.00000000000000837	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0206257_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0206257_42	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A