UHGV-0206273 (vOTU-159989)

Viral Genome: UHGV-0206273

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0206273
vOTU ID	vOTU-159989
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781778_a1_ct222243_vs1@Siphoviridae__sp._ctFdz1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.58 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.79
Jumbo phage	No

Genome content
Genome length (bp)	36,918
GC content	39.82%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	80
CDS density	84%
Average CDS length (bps)	385.31
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0206273_1	phrog_909	84.0	1.3e-24	major head protein	head and packaging
UniRef90	UHGV-0206273_1	UniRef90_R7BGI8	187.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0206273_1	1347368.HG964404_gene4994	58.9	0.00000000127	N/A	N/A
UniRef90	UHGV-0206273_2	UniRef90_R6C0B6	150.0	5.42303e-43	Phage capsid scaffolding protein	N/A
PHROG	UHGV-0206273_3	phrog_64	179.1	0	portal protein	head and packaging
UniRef90	UHGV-0206273_3	UniRef90_UPI001D0761B7	936.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0206273_3	1298920.KI911353_gene2663	473.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0206273_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0206273_3	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206273_4	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_5	phrog_2470	60.6	2.4e-17	membrane protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0206273_5	UniRef90_A0A414ZRJ4	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-0206273_5	649747.HMPREF0083_06229	56.6	0.00000000591	N/A	N/A
Pfam	UHGV-0206273_5	PF11750	N/A	N/A	N/A	DUF3307
structural_annotation	UHGV-0206273_5	PF11750	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_6	phrog_36	60.3	3.7e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0206273_6	397290.C810_01391	179.0	0	N/A	N/A
structural_annotation	UHGV-0206273_6	MF_00307	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_7	phrog_38	140.4	1.19993e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0206273_7	UniRef90_A0A352SH30	1152.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0206273_7	397290.C810_01390	671.0	0	chromosome segregation	N/A
Pfam	UHGV-0206273_7	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-0206273_7	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206273_7	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_8	phrog_2834	45.1	0.0000000000012	N/A	unknown function
UniRef90	UHGV-0206273_9	UniRef90_UPI001D08650D	185.0	0	Com family DNA-binding transcriptional regulator	N/A
Pfam	UHGV-0206273_9	PF10122	N/A	N/A	N/A	Mu-like_Com
structural_annotation	UHGV-0206273_9	PF10122,COG4416	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206273_10	PF04466	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206273_11	UniRef90_A0A8D9PG29	53.1	0.000000189	Acetyl-coA carboxylase zinc finger domain protein	N/A
structural_annotation	UHGV-0206273_15	PF20556	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206273_17	1235793.C809_00537	49.3	0.00000635	N/A	N/A
UniRef90	UHGV-0206273_20	UniRef90_A0A8D9UIS5	132.0	1.86e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0206273_20	658655.HMPREF0988_00895	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-0206273_21	411470.RUMGNA_03786	80.9	5.91e-18	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0206273_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0206273_23	PF05534	N/A	N/A	HicB family	HicB
structural_annotation	UHGV-0206273_23	PF03869,NF041793	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_24	phrog_13890	40.3	0.000000000041	N/A	unknown function
structural_annotation	UHGV-0206273_24	PF19807,NF010256,COG4453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206273_31	PF13973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206273_32	411902.CLOBOL_05754	52.8	0.00000000346	N/A	N/A
structural_annotation	UHGV-0206273_32	PF02151	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206273_34	UniRef90_A0A0H5SJB6	66.6	0.000000000933	Putative secreted protein	N/A
eggNOG-mapper	UHGV-0206273_34	935836.JAEL01000009_gene3836	53.1	0.00000481	N/A	N/A
PHROG	UHGV-0206273_35	phrog_2657	205.3	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206273_35	UniRef90_UPI0011DE0CA7	320.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0206273_35	33035.JPJF01000043_gene993	321.0	0	N/A	N/A
Pfam	UHGV-0206273_35	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0206273_35	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0206273_35	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0206273_35	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206273_36	UniRef90_A0A2N2BU09	86.3	3.7e-21	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0206273_36	1235800.C819_00492	45.4	0.00000901	N/A	N/A
structural_annotation	UHGV-0206273_36	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_38	phrog_4608	134.7	8e-40	anti-repressor	transcription regulation
UniRef90	UHGV-0206273_38	UniRef90_UPI001D05F100	404.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-0206273_38	658655.HMPREF0988_00907	201.0	0	ORF6N domain	N/A
Pfam	UHGV-0206273_38	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-0206273_38	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_39	phrog_1233	56.3	6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0206273_39	397290.C810_01336	100.0	2.52e-26	N/A	N/A
eggNOG-mapper	UHGV-0206273_40	658655.HMPREF0988_00915	128.0	5.61e-34	N/A	N/A
PHROG	UHGV-0206273_41	phrog_20016	228.7	0	N/A	unknown function
UniRef90	UHGV-0206273_41	UniRef90_A0A285PT46	171.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0206273_41	397290.C810_05214	226.0	0	N/A	N/A
structural_annotation	UHGV-0206273_41	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_42	phrog_16490	178.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0206273_42	397290.C810_01328	153.0	3.00999e-42	N/A	N/A
PHROG	UHGV-0206273_44	phrog_21718	46.9	0.00000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0206273_44	397290.C810_01326	72.8	0.0000000000000676	N/A	N/A
KOfam	UHGV-0206273_47	K14059	119.7	3.7e-35	int; integrase	N/A
PHROG	UHGV-0206273_47	phrog_1	118.8	5.8e-35	integrase	integration and excision
UniRef90	UHGV-0206273_47	UniRef90_UPI001D00AE51	486.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0206273_47	97139.C824_00125	446.0	0	Phage integrase family	N/A
Pfam	UHGV-0206273_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0206273_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0206273_47	PF00589,PF02920,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206273_48	UniRef90_A0A413Z5X3	80.1	2.92e-18	LuxR family transcriptional regulator	N/A
structural_annotation	UHGV-0206273_48	PF00196,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206273_49	UniRef90_UPI0018C75AF4	97.1	3.15e-25	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0206273_49	NF007260	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206273_50	457412.RSAG_01159	246.0	0	N/A	N/A
KOfam	UHGV-0206273_54	K00558	43.2	0.0000000000035	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0206273_54	phrog_23072	121.0	1.3e-35	DNA methyltransferase	other
UniRef90	UHGV-0206273_54	UniRef90_A0A1Q6UYZ8	193.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0206273_54	1235800.C819_02255	157.0	2.8026e-44	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0206273_54	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0206273_54	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0206273_56	K00390	79.8	2e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0206273_56	phrog_424	113.0	2.4e-33	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0206273_56	UniRef90_UPI000CF96674	549.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0206273_56	1232452.BAIB02000007_gene1640	330.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0206273_56	BrxP_00001	57.5	3.5e-18	BrxP	BREX
Pfam	UHGV-0206273_56	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0206273_56	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0206273_56	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_60	phrog_986	77.5	1.5e-22	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206273_60	UniRef90_A0A3D4CBP5	104.0	1.33e-27	N/A	N/A
eggNOG-mapper	UHGV-0206273_60	663241.C9E2N9_9CAUD	62.0	0.000000000164	N/A	N/A
Pfam	UHGV-0206273_60	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0206273_60	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_61	phrog_8684	108.9	2.4e-32	N/A	unknown function
UniRef90	UHGV-0206273_61	UniRef90_A0A3R6KSP4	171.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0206273_61	742733.HMPREF9469_00912	89.4	1.36e-20	YopX protein	N/A
Pfam	UHGV-0206273_61	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0206273_61	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0206273_61	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206273_63	UniRef90_A0A352SFV2	151.0	4.2039e-45	N/A	N/A
Pfam	UHGV-0206273_63	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0206273_64	397290.C810_01492	62.0	0.000000000411	N/A	N/A
PHROG	UHGV-0206273_67	phrog_8489	195.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206273_67	UniRef90_A0A352SFU9	212.0	0	DNA replication protein (Fragment)	N/A
eggNOG-mapper	UHGV-0206273_67	1201292.DR75_342	153.0	1.68156e-44	DnaD domain protein	N/A
COG	UHGV-0206273_67	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0206273_67	TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_71	phrog_19106	199.1	0	N/A	unknown function
UniRef90	UHGV-0206273_71	UniRef90_A0A417B0D0	256.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0206273_71	397290.C810_01509	258.0	0	N/A	N/A
structural_annotation	UHGV-0206273_71	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_73	phrog_6724	82.7	3.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0206273_73	1463936.JOJI01000043_gene7935	62.4	0.0000000000372	N/A	N/A
KOfam	UHGV-0206273_74	K06167	45.3	0.00000000000092	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0206273_74	phrog_392	168.3	0	metal-dependent hydrolase	other
UniRef90	UHGV-0206273_74	UniRef90_A0A352SIH6	430.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0206273_74	1443122.Z958_05735	170.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0206273_74	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-0206273_74	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-0206273_74	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0206273_74	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_76	phrog_2760	195.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206273_76	UniRef90_UPI001D08E6D4	489.0	0	phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0206273_76	397290.C810_01467	332.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-0206273_76	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0206273_76	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0206273_76	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0206273_76	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206273_77	697284.ERIC2_c26770	55.8	0.00000282	N/A	N/A
structural_annotation	UHGV-0206273_77	PF18129,PF09953,PF04319,PF08962,MF_00369,NF002745,COG2139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206273_79	PF02237,MF_00257,NF037951,COG4013	N/A	N/A	N/A	N/A
PHROG	UHGV-0206273_80	phrog_4433	97.9	6.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0206273_80	573061.Clocel_3578	58.2	0.0000000492	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0206273_80	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A