UHGV-0206473 (vOTU-060305)

Viral Genome: UHGV-0206473

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0206473
vOTU ID	vOTU-060305
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781784_a1_ct54955_vs1@Siphoviridae__sp._ctrvs1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.33 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9727
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.59
Jumbo phage	No

Genome content
Genome length (bp)	38,826
GC content	55.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	91%
Average CDS length (bps)	552.47
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0206473_1	1408437.JNJN01000040_gene189	48.9	0.00000279	N/A	N/A
PHROG	UHGV-0206473_3	phrog_37604	113.0	1.7e-33	N/A	unknown function
eggNOG-mapper	UHGV-0206473_3	457412.RSAG_01109	95.5	4.04e-23	N/A	N/A
UniRef90	UHGV-0206473_5	UniRef90_A0A6P1MDZ1	223.0	0	Peptidase_C39_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0206473_5	397291.C804_01109	206.0	0	Phage lysozyme	N/A
Pfam	UHGV-0206473_5	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-0206473_5	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0206473_5	PF03412,COG4990	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206473_6	UniRef90_UPI001C037734	90.9	8.17e-23	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-0206473_6	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0206473_6	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0206473_6	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206473_15	641112.ACOK01000103_gene525	58.9	0.0000000565	N/A	N/A
structural_annotation	UHGV-0206473_16	PF18573,NF033147	N/A	N/A	N/A	N/A
Pfam	UHGV-0206473_17	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
KOfam	UHGV-0206473_18	K14059	210.6	0	int; integrase	N/A
PHROG	UHGV-0206473_18	phrog_1	200.9	0	integrase	integration and excision
UniRef90	UHGV-0206473_18	UniRef90_UPI0019585560	406.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0206473_18	1408437.JNJN01000039_gene380	193.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0206473_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0206473_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0206473_18	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0206473_21	K02342	158.6	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0206473_21	phrog_192	144.1	5.99756e-43	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206473_21	UniRef90_M9M3D6	103.0	1.09e-21	DNA polymerase III	N/A
eggNOG-mapper	UHGV-0206473_21	935948.KE386494_gene251	133.0	1.91e-31	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	N/A
PADLOC	UHGV-0206473_21	cd06127	121.1	9.4e-36	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0206473_21	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0206473_21	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0206473_21	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
structural_annotation	UHGV-0206473_22	NF038294	N/A	N/A	N/A	N/A
KOfam	UHGV-0206473_23	K22300	55.6	0.0000000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0206473_23	phrog_8	48.6	0.00000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206473_23	UniRef90_A0A3A9I218	70.1	0.00000000000069	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0206473_23	887325.HMPREF0381_0352	58.2	0.00000000437	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0206473_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0206473_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0206473_23	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206473_27	PF19157	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_30	phrog_270	109.0	5.3e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206473_30	UniRef90_UPI001F33ADD3	199.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0206473_30	411467.BACCAP_01805	131.0	1.45e-33	COG NOG34358 non supervised orthologous group	N/A
Pfam	UHGV-0206473_30	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0206473_30	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0206473_30	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0206473_31	K02314	239.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0206473_31	phrog_19	239.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206473_31	UniRef90_A0A2N2CPU6	288.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0206473_31	1007096.BAGW01000033_gene1616	231.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0206473_31	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0206473_31	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0206473_31	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0206473_31	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0206473_32	K01494	174.4	0	dcd; dCTP deaminase [EC:3.5.4.13]	N/A
PHROG	UHGV-0206473_32	phrog_1663	93.7	1.9e-27	dCTP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206473_32	UniRef90_A0A352KV84	209.0	0	dCTP deaminase, dUMP-forming	N/A
eggNOG-mapper	UHGV-0206473_32	1121335.Clst_0069	204.0	0	TIGRFAM deoxycytidine triphosphate deaminase	N/A
Pfam	UHGV-0206473_32	PF06559	N/A	N/A	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
NCBIFam	UHGV-0206473_32	TIGR02274.1	N/A	N/A	dCTP deaminase	N/A
COG	UHGV-0206473_32	COG0717	N/A	N/A	dCTP deaminase	N/A
HAMAP	UHGV-0206473_32	MF_00146	N/A	N/A	dCTP deaminase, dUMP-forming [dcd]	N/A
PHROG	UHGV-0206473_35	phrog_7839	83.9	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0206473_35	665956.HMPREF1032_03091	135.0	9.07999e-40	N/A	N/A
structural_annotation	UHGV-0206473_35	PF08860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206473_37	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_38	phrog_757	175.8	0	DNA methyltransferase	other
UniRef90	UHGV-0206473_38	UniRef90_A0A7X5DY03	365.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0206473_38	397290.C810_01487	347.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0206473_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0206473_38	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_40	phrog_474	128.7	6e-38	phosphofructokinase	other
UniRef90	UHGV-0206473_40	UniRef90_A0A7X6GRJ7	100.0	7.32e-25	N/A	N/A
eggNOG-mapper	UHGV-0206473_40	1123247.AUIJ01000002_gene2234	97.8	2.48e-24	N/A	N/A
Pfam	UHGV-0206473_40	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
Pfam	UHGV-0206473_40	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0206473_40	PF19905,PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_41	phrog_3584	83.5	1.7e-24	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0206473_41	742738.HMPREF9460_04063	179.0	0	N/A	N/A
structural_annotation	UHGV-0206473_41	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206473_42	742738.HMPREF9460_00868	66.2	0.0000000000000942	Cysteine-rich KTR	N/A
Pfam	UHGV-0206473_42	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0206473_42	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_43	phrog_20533	50.2	0.000000000000032	N/A	unknown function
UniRef90	UHGV-0206473_43	UniRef90_A0A413FXL7	200.0	0	PLD phosphodiesterase domain-containing protein	N/A
eggNOG-mapper	UHGV-0206473_43	1123058.KB894251_gene2369	83.2	7.88e-17	N/A	N/A
PHROG	UHGV-0206473_44	phrog_83	49.6	0.000000000000033	terminase small subunit	head and packaging
UniRef90	UHGV-0206473_44	UniRef90_UPI0013EF20CD	110.0	2.51e-28	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0206473_44	1236976.JCM16418_791	64.3	0.0000000000407	Phage terminase, small subunit	N/A
Pfam	UHGV-0206473_44	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0206473_44	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0206473_45	phrog_9	316.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0206473_45	UniRef90_A0A6N3FX18	959.0	0	Phage Terminase	N/A
eggNOG-mapper	UHGV-0206473_45	693746.OBV_20000	939.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0206473_45	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0206473_45	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0206473_45	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0206473_45	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_47	phrog_12	274.9	0	portal protein	head and packaging
UniRef90	UHGV-0206473_47	UniRef90_UPI001AE072D2	467.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0206473_47	693746.OBV_20020	193.0	0	Phage portal protein	N/A
Pfam	UHGV-0206473_47	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0206473_47	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0206473_47	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0206473_47	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0206473_48	K01358	85.9	5.6e-25	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0206473_48	phrog_94	159.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0206473_48	UniRef90_A0A644ZMQ3	185.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0206473_48	1121864.OMO_01325	120.0	2.84e-30	Clp protease	N/A
Pfam	UHGV-0206473_48	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0206473_48	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0206473_48	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_49	phrog_10	86.5	3.6e-25	major head protein	head and packaging
UniRef90	UHGV-0206473_49	UniRef90_A0A2U1BC11	390.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0206473_49	742740.HMPREF9474_04304	177.0	0	Phage capsid family	N/A
Pfam	UHGV-0206473_49	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0206473_49	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0206473_49	PF05065,PF14182,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_50	phrog_40	47.5	0.00000000000022	head-tail adaptor Ad1	connector
UniRef90	UHGV-0206473_50	UniRef90_A0A8F9U0R6	75.1	0.00000000000000125	Head-tail connector protein	N/A
eggNOG-mapper	UHGV-0206473_50	1295642.H839_15953	59.7	0.00000000027	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0206473_50	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0206473_50	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0206473_51	phrog_25	61.3	1.4e-17	head closure Hc1	connector
UniRef90	UHGV-0206473_51	UniRef90_UPI0018E290DF	129.0	1.79e-36	phage head closure protein	N/A
eggNOG-mapper	UHGV-0206473_51	641107.CDLVIII_1341	77.4	7.08e-17	Phage head-tail adaptor	N/A
Pfam	UHGV-0206473_51	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0206473_51	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0206473_51	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0206473_51	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_52	phrog_5	44.8	0.000000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-0206473_52	UniRef90_UPI001B17C60C	100.0	1.81e-24	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0206473_52	1095747.HMPREF1049_2007	99.0	1.47e-24	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0206473_52	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0206473_52	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
Pfam	UHGV-0206473_53	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0206473_53	PF20765,TIGR01633,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_54	phrog_1480	326.3	0	tail sheath	tail
UniRef90	UHGV-0206473_54	UniRef90_A0A841KX31	246.0	0	Phage_sheath_1C domain-containing protein	N/A
eggNOG-mapper	UHGV-0206473_54	1449126.JQKL01000051_gene3164	206.0	0	Phage tail sheath protein subtilisin-like domain	N/A
Pfam	UHGV-0206473_54	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0206473_54	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_55	phrog_365	143.1	1.00053e-42	tail protein	tail
UniRef90	UHGV-0206473_55	UniRef90_R5BEH1	164.0	0	PBSX prophage	N/A
eggNOG-mapper	UHGV-0206473_55	393480.FNP_1694	154.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0206473_55	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0206473_55	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_56	phrog_4976	83.2	3.2e-24	tail assembly chaperone	tail
UniRef90	UHGV-0206473_56	UniRef90_A0A1H9HB43	52.8	0.00000308	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
eggNOG-mapper	UHGV-0206473_56	632245.CLP_2608	55.8	0.0000000337	N/A	N/A
structural_annotation	UHGV-0206473_56	PF08890,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_57	phrog_23464	226.6	0	N/A	unknown function
UniRef90	UHGV-0206473_57	UniRef90_A0A1C6JGQ9	133.0	4.76e-29	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0206473_57	1378168.N510_03078	219.0	0	Tail tape measure protein, TP901 family	N/A
COG	UHGV-0206473_57	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0206473_57	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_58	phrog_30550	108.8	4.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0206473_58	1286171.EAL2_c11150	72.0	0.00000000000469	LysM domain	N/A
COG	UHGV-0206473_58	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
structural_annotation	UHGV-0206473_58	PF19266,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0206473_59	K19304	142.1	5.5001e-42	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0206473_59	phrog_400	159.9	0	tail protein	tail
UniRef90	UHGV-0206473_59	UniRef90_UPI001650FD52	129.0	1.82e-28	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0206473_59	411468.CLOSCI_04054	132.0	1.73e-31	Peptidase family M23	N/A
Pfam	UHGV-0206473_59	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0206473_59	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
structural_annotation	UHGV-0206473_60	PF10844,MF_00403_A,NF003254	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206473_61	UniRef90_UPI000F8EF05A	67.4	0.0000000000165	N/A	N/A
eggNOG-mapper	UHGV-0206473_61	1285586.H131_21242	68.2	0.00000000000152	N/A	N/A
Pfam	UHGV-0206473_61	PF10934	N/A	N/A	N/A	DUF2634
structural_annotation	UHGV-0206473_61	PF10934,MF_02010,NF010728,COG4381	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_62	phrog_6	209.2	0	baseplate protein	tail
UniRef90	UHGV-0206473_62	UniRef90_UPI0009F5CC39	284.0	0	baseplate J/gp47 family protein	N/A
eggNOG-mapper	UHGV-0206473_62	1123239.KB898628_gene3248	242.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0206473_62	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0206473_62	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206473_62	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0206473_63	phrog_521	56.8	2.4e-16	tail protein	tail
UniRef90	UHGV-0206473_63	UniRef90_UPI001C0DB562	122.0	7.87e-32	N/A	N/A
eggNOG-mapper	UHGV-0206473_63	1120998.AUFC01000013_gene2954	104.0	7.04e-26	N/A	N/A
COG	UHGV-0206473_63	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206473_63	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206473_64	743719.PaelaDRAFT_4894	65.5	0.00000000536	nuclear chromosome segregation	N/A
COG	UHGV-0206473_64	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A