UHGV-0206788 (vOTU-098422)

Viral Genome: UHGV-0206788

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0206788
vOTU ID	vOTU-098422
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252259_a1_ct132680_vs1@Siphoviridae__sp._ct5OA1
Associated BioSample	SAMN11252259
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.62 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.91
Jumbo phage	No

Genome content
Genome length (bp)	25,240
GC content	55.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	91%
Average CDS length (bps)	511.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0206788_2	phrog_115	115.0	3.2e-34	minor head protein	head and packaging
UniRef90	UHGV-0206788_2	UniRef90_A0A810PSD3	595.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_2	1111121.HMPREF1247_0797	189.0	0	cell adhesion	N/A
Pfam	UHGV-0206788_2	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0206788_2	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0206788_2	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206788_2	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_3	phrog_5	68.4	1.3e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-0206788_3	UniRef90_A0A4D7AJK9	192.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0206788_3	764299.STRIC_1434	102.0	3.82e-26	N/A	N/A
Pfam	UHGV-0206788_3	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0206788_3	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206788_4	UniRef90_A0A6B9SU02	77.4	0.000000000000046	Fibronectin autolysin	N/A
structural_annotation	UHGV-0206788_4	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_5	phrog_544	180.6	0	major head protein	head and packaging
UniRef90	UHGV-0206788_5	UniRef90_A0A810PZM2	732.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_5	1347392.CCEZ01000005_gene1236	276.0	0	N/A	N/A
Pfam	UHGV-0206788_5	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0206788_5	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_7	phrog_17977	73.7	1.7e-21	N/A	unknown function
UniRef90	UHGV-0206788_7	UniRef90_UPI00141211AB	93.2	3.47e-22	head-tail adaptor protein	N/A
structural_annotation	UHGV-0206788_7	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_8	phrog_17405	41.1	0.000000000027	head protein	head and packaging
UniRef90	UHGV-0206788_8	UniRef90_A0A415JI88	115.0	7.61e-31	N/A	N/A
structural_annotation	UHGV-0206788_8	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_9	phrog_885	83.6	2.1e-24	major tail protein	tail
UniRef90	UHGV-0206788_9	UniRef90_A0A843J9F0	227.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_9	1504822.CCNO01000012_gene492	252.0	0	N/A	N/A
structural_annotation	UHGV-0206788_9	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206788_10	UniRef90_A0A285PXU7	71.6	0.000000000000212	Consensus disorder prediction	N/A
PHROG	UHGV-0206788_12	phrog_6900	272.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0206788_12	UniRef90_A0A6N7SND2	219.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0206788_12	536233.CLO_1577	313.0	0	tape measure	N/A
COG	UHGV-0206788_12	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0206788_12	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_13	phrog_1194	43.7	0.0000000000043	N/A	unknown function
structural_annotation	UHGV-0206788_13	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_14	phrog_32744	621.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0206788_14	1120998.AUFC01000030_gene2247	236.0	0	N/A	N/A
structural_annotation	UHGV-0206788_14	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
KOfam	UHGV-0206788_16	K16628	72.2	1.9e-21	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0206788_16	phrog_5073	111.4	8.2e-33	tail fiber protein	tail
eggNOG-mapper	UHGV-0206788_16	1519439.JPJG01000060_gene1892	201.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0206788_16	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0206788_16	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0206788_16	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_18	phrog_4105	45.1	0.0000000000017	N/A	unknown function
UniRef90	UHGV-0206788_19	UniRef90_A0A1T5AMW7	97.4	1.16e-21	NAGPA domain-containing protein	N/A
structural_annotation	UHGV-0206788_19	PF09992,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_20	phrog_13256	80.1	1.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0206788_20	1226322.HMPREF1545_00132	68.9	0.0000000000000106	N/A	N/A
PHROG	UHGV-0206788_21	phrog_21357	85.1	7.4e-25	endolysin	lysis
UniRef90	UHGV-0206788_21	UniRef90_G9YP37	162.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_21	243164.DET1070	158.0	3.50325e-43	SMART Glycoside hydrolase, family 25 subgroup	N/A
Pfam	UHGV-0206788_21	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0206788_21	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0206788_21	PF10030,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_23	phrog_3754	110.8	9.7e-33	N/A	unknown function
eggNOG-mapper	UHGV-0206788_23	1226322.HMPREF1545_00073	174.0	0	N/A	N/A
PHROG	UHGV-0206788_24	phrog_21718	109.5	2.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-0206788_24	397290.C810_05210	75.5	0.0000000000000043	N/A	N/A
PHROG	UHGV-0206788_25	phrog_22984	72.8	1.4e-21	N/A	unknown function
PHROG	UHGV-0206788_26	phrog_16490	144.5	1.20512e-43	N/A	unknown function
eggNOG-mapper	UHGV-0206788_26	1408437.JNJN01000043_gene803	174.0	0	N/A	N/A
PHROG	UHGV-0206788_27	phrog_3180	49.2	0.000000000000069	Arc-like repressor	transcription regulation
UniRef90	UHGV-0206788_27	UniRef90_D7GWE6	61.2	0.0000000000237	RHH_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_27	86416.Clopa_1906	52.4	0.0000000117	Ribbon-helix-helix domain	N/A
Pfam	UHGV-0206788_27	PF12651	N/A	N/A	Ribbon-helix-helix domain	RHH_3
structural_annotation	UHGV-0206788_27	PF12651,NF041793,COG3905	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_28	phrog_374	188.0	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206788_28	UniRef90_A0A7W0C2S3	189.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0206788_28	1291743.LOSG293_110580	169.0	0	N/A	N/A
PHROG	UHGV-0206788_29	phrog_20016	174.2	0	N/A	unknown function
UniRef90	UHGV-0206788_29	UniRef90_A0A285PT46	170.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0206788_29	1226322.HMPREF1545_00077	142.0	1.07998e-41	N/A	N/A
structural_annotation	UHGV-0206788_29	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_30	phrog_28802	50.8	0.0000000000000048	N/A	unknown function
eggNOG-mapper	UHGV-0206788_31	1232443.BAIA02000078_gene6	59.3	0.000000000967	N/A	N/A
KOfam	UHGV-0206788_32	K06400	266.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0206788_32	phrog_95	288.3	0	integrase	integration and excision
UniRef90	UHGV-0206788_32	UniRef90_A0A3A9I9T1	369.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0206788_32	357809.Cphy_2997	290.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0206788_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0206788_32	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0206788_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0206788_32	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206788_33	UniRef90_A0A810PZB1	73.9	0.000000000000135	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0206788_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0206788_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0206788_33	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206788_34	UniRef90_A0A3D1I232	83.2	6.63e-19	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_34	218140.BPSY_1280	56.6	0.00000000157	N/A	N/A
structural_annotation	UHGV-0206788_34	TIGR04165,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_38	phrog_585	80.1	2.3e-23	N/A	unknown function
UniRef90	UHGV-0206788_38	UniRef90_UPI001951C09D	77.8	0.00000000000000121	N/A	N/A
eggNOG-mapper	UHGV-0206788_38	1280692.AUJL01000009_gene2980	66.6	0.00000000000482	N/A	N/A
Pfam	UHGV-0206788_38	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0206788_38	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-0206788_39	K22300	50.0	0.000000000000059	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0206788_39	phrog_8	51.4	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206788_39	UniRef90_UPI000F52D5ED	64.7	0.0000000000381	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_39	1304866.K413DRAFT_0834	60.5	0.000000000284	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0206788_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0206788_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0206788_40	K22300	45.5	0.0000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0206788_40	phrog_8	40.2	0.000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206788_40	UniRef90_A0A810PZI0	107.0	1.51e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_40	1203606.HMPREF1526_00248	52.8	0.0000000177	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0206788_40	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0206788_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0206788_40	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_43	phrog_757	143.6	8.50588e-43	DNA methyltransferase	other
UniRef90	UHGV-0206788_43	UniRef90_A0A349YFI2	228.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0206788_43	1095750.HMPREF9970_0173	215.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0206788_43	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0206788_43	PF04445,MF_00341,TIGR00537,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_44	phrog_22529	114.3	5.3e-34	N/A	unknown function
UniRef90	UHGV-0206788_44	UniRef90_A0A352RPR8	157.0	1.4013e-45	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0206788_44	411461.DORFOR_01578	117.0	4.33e-28	3D domain	N/A
Pfam	UHGV-0206788_44	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0206788_44	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0206788_44	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0206788_45	phrog_4433	66.5	4.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0206788_45	886882.PPSC2_p0363	94.0	2.62e-20	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0206788_45	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A