UHGV-0207028 (vOTU-048151)

Viral Genome: UHGV-0207028

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0207028
vOTU ID	vOTU-048151
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11031335_a1_ct3189@circular@Caudovirales__sp._cto6C189
Associated BioSample	SAMN11031335
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9701
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.9
Jumbo phage	No

Genome content
Genome length (bp)	34,923
GC content	46.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	89%
Average CDS length (bps)	662.49
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0207028_1	K07727	49.0	0.00000000000014	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0207028_1	phrog_8	42.1	0.000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0207028_1	UniRef90_UPI001C67D9B6	178.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0207028_1	469596.HMPREF9488_03644	187.0	0	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0207028_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0207028_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0207028_2	K07467	200.5	0	nicK; putative DNA relaxase	N/A
PHROG	UHGV-0207028_2	phrog_453	51.9	0.000000000000007	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207028_2	UniRef90_R9IRQ7	644.0	0	Rol_Rep_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0207028_2	469596.HMPREF9488_03819	652.0	0	Replication initiation factor	N/A
Pfam	UHGV-0207028_2	PF18106	N/A	N/A	Rolling Circle replication initiation protein N-terminal domain	Rol_Rep_N
Pfam	UHGV-0207028_2	PF02486	N/A	N/A	Replication initiation factor	Rep_trans
COG	UHGV-0207028_2	COG2946	N/A	N/A	DNA relaxase NicK	N/A
PHROG	UHGV-0207028_3	phrog_16129	98.2	3.2e-29	excisionase	integration and excision
UniRef90	UHGV-0207028_3	UniRef90_V5ZEM7	124.0	7.74e-36	Excisionase	N/A
eggNOG-mapper	UHGV-0207028_3	411460.RUMTOR_01829	127.0	7.59e-38	Excisionase from transposon Tn916	N/A
Pfam	UHGV-0207028_3	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
structural_annotation	UHGV-0207028_3	PF09035,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0207028_4	K14059	206.7	0	int; integrase	N/A
PHROG	UHGV-0207028_4	phrog_1	210.1	0	integrase	integration and excision
UniRef90	UHGV-0207028_4	UniRef90_A0A174BZU7	696.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0207028_4	908340.HMPREF9406_2287	704.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0207028_4	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-0207028_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0207028_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0207028_4	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_5	phrog_10226	224.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0207028_5	1291050.JAGE01000002_gene3330	251.0	0	Restriction endonuclease	N/A
COG	UHGV-0207028_5	COG1715	N/A	N/A	Restriction endonuclease Mrr	N/A
structural_annotation	UHGV-0207028_5	COG4127	N/A	N/A	N/A	N/A
KOfam	UHGV-0207028_7	K14059	221.2	0	int; integrase	N/A
PHROG	UHGV-0207028_7	phrog_1	180.2	0	integrase	integration and excision
UniRef90	UHGV-0207028_7	UniRef90_A0A5M8BL88	678.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0207028_7	742733.HMPREF9469_01857	669.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0207028_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0207028_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0207028_7	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207028_8	742733.HMPREF9469_01468	52.8	0.0000000136	N/A	N/A
PHROG	UHGV-0207028_9	phrog_463	61.6	1.2e-17	anti-repressor	transcription regulation
UniRef90	UHGV-0207028_9	UniRef90_A0A0F0CC36	444.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0207028_9	397290.C810_01420	297.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0207028_9	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0207028_9	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0207028_9	PF02498,NF033622,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_10	phrog_3291	64.0	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0207028_10	658086.HMPREF0994_06176	80.5	3.35e-19	N/A	N/A
UniRef90	UHGV-0207028_11	UniRef90_UPI001D068B5A	481.0	0	C40 family peptidase	N/A
eggNOG-mapper	UHGV-0207028_11	411902.CLOBOL_00116	521.0	0	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
COG	UHGV-0207028_11	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0207028_11	PF19127,PF00877,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_12	phrog_1129	80.6	1.1e-23	holin	lysis
UniRef90	UHGV-0207028_12	UniRef90_A0A3E2U4V5	153.0	0	Holin	N/A
eggNOG-mapper	UHGV-0207028_12	1256908.HMPREF0373_00463	112.0	1.33e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0207028_12	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0207028_12	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_13	phrog_1863	83.5	2.4e-25	N/A	unknown function
UniRef90	UHGV-0207028_13	UniRef90_UPI001F223E8B	111.0	1.6e-30	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0207028_13	1226322.HMPREF1545_04027	82.4	9.85e-20	N/A	N/A
UniRef90	UHGV-0207028_14	UniRef90_A0A3E2U4U3	92.4	5.53e-24	XkdX family protein	N/A
Pfam	UHGV-0207028_14	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0207028_14	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207028_15	742733.HMPREF9469_01800	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207028_17	742733.HMPREF9469_02860	62.0	0.0000000102	N/A	N/A
eggNOG-mapper	UHGV-0207028_18	1298920.KI911353_gene541	62.8	0.00000000779	ATPase involved in DNA repair	N/A
COG	UHGV-0207028_18	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0207028_18	PF07675,NF038128	N/A	N/A	N/A	N/A
COG	UHGV-0207028_19	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0207028_20	1304866.K413DRAFT_0769	100.0	9.79e-25	N/A	N/A
PHROG	UHGV-0207028_21	phrog_18725	44.3	0.0000000000028	N/A	unknown function
eggNOG-mapper	UHGV-0207028_21	411902.CLOBOL_00123	134.0	1.95e-38	N/A	N/A
PHROG	UHGV-0207028_22	phrog_32744	166.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0207028_22	411902.CLOBOL_00124	474.0	0	N/A	N/A
structural_annotation	UHGV-0207028_22	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_23	phrog_1194	52.7	0.0000000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0207028_23	411902.CLOBOL_00125	128.0	2.04e-36	N/A	N/A
structural_annotation	UHGV-0207028_23	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_24	phrog_37543	511.8	0	N/A	unknown function
UniRef90	UHGV-0207028_24	UniRef90_UPI001DBC5439	186.0	0	PspA/IM30 family protein	N/A
eggNOG-mapper	UHGV-0207028_24	1432847.V5USK5_9VIRU	176.0	1.54143e-44	N-acetylmuramoyl-L-alanine amidase activity	N/A
PHROG	UHGV-0207028_25	phrog_37543	259.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0207028_25	411902.CLOBOL_00126	140.0	2.67e-33	N/A	N/A
COG	UHGV-0207028_25	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0207028_25	PF05384	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_26	phrog_706	149.4	1.68156e-44	N/A	unknown function
UniRef90	UHGV-0207028_26	UniRef90_UPI00192502EA	295.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0207028_26	411902.CLOBOL_00127	257.0	0	N/A	N/A
Pfam	UHGV-0207028_26	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0207028_26	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_27	phrog_11299	113.1	2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0207028_27	1298920.KI911353_gene2067	148.0	1.079e-43	N/A	N/A
PHROG	UHGV-0207028_28	phrog_3099	166.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0207028_28	411902.CLOBOL_00129	293.0	0	N/A	N/A
structural_annotation	UHGV-0207028_28	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_29	phrog_3266	115.1	3.7e-34	tail completion	connector
eggNOG-mapper	UHGV-0207028_29	411902.CLOBOL_00130	286.0	0	N/A	N/A
structural_annotation	UHGV-0207028_29	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_30	phrog_556	81.9	4e-24	minor head protein	head and packaging
UniRef90	UHGV-0207028_30	UniRef90_UPI00189CE0C6	232.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0207028_30	411902.CLOBOL_00131	244.0	0	Minor capsid protein	N/A
Pfam	UHGV-0207028_30	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0207028_30	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_31	phrog_3366	70.4	1.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0207028_31	411902.CLOBOL_00132	219.0	0	N/A	N/A
Pfam	UHGV-0207028_31	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0207028_31	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_32	phrog_541	82.8	3.3e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0207028_32	411902.CLOBOL_00133	200.0	0	N/A	N/A
PHROG	UHGV-0207028_33	phrog_10	174.0	0	major head protein	head and packaging
UniRef90	UHGV-0207028_33	UniRef90_UPI000E438149	709.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0207028_33	411902.CLOBOL_00134	748.0	0	Phage capsid family	N/A
Pfam	UHGV-0207028_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0207028_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0207028_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0207028_33	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_34	phrog_194	96.3	3.9e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0207028_34	UniRef90_C0CSR8	294.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0207028_34	411902.CLOBOL_00135	316.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0207028_34	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0207028_34	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_36	phrog_581	298.6	0	minor head protein	head and packaging
UniRef90	UHGV-0207028_36	UniRef90_UPI001D067B9F	1043.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0207028_36	411902.CLOBOL_00137	1073.0	0	N/A	N/A
Pfam	UHGV-0207028_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0207028_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207028_36	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_37	phrog_533	416.6	0	portal protein	head and packaging
UniRef90	UHGV-0207028_37	UniRef90_UPI0011062C56	818.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0207028_37	411902.CLOBOL_00138	894.0	0	N/A	N/A
Pfam	UHGV-0207028_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0207028_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0207028_38	K06909	95.9	4.9e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0207028_38	phrog_2	110.9	2e-32	terminase large subunit	head and packaging
UniRef90	UHGV-0207028_38	UniRef90_UPI0011836F65	813.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0207028_38	1449050.JNLE01000003_gene3895	592.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0207028_38	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0207028_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0207028_38	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_39	phrog_509	270.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0207028_39	UniRef90_R5J299	369.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0207028_39	1449050.JNLE01000003_gene3896	284.0	0	DNA packaging	N/A
Pfam	UHGV-0207028_39	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0207028_39	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0207028_39	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207028_39	NF040601,COG5484	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207028_41	1220589.CD32_01770	174.0	0	N/A	N/A
AcrCatalog	UHGV-0207028_41	cluster_38765	194.0	0	NA	N/A
structural_annotation	UHGV-0207028_41	PF15931,NF001462,COG2974	N/A	N/A	N/A	N/A
PHROG	UHGV-0207028_42	phrog_1558	152.3	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0207028_42	UniRef90_UPI001D093592	340.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0207028_42	1163671.JAGI01000002_gene3057	169.0	0	N/A	N/A
structural_annotation	UHGV-0207028_42	PF13613,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207028_44	PF13248	N/A	N/A	N/A	N/A
KOfam	UHGV-0207028_46	K07486	164.4	0	K07486; transposase	N/A
PHROG	UHGV-0207028_46	phrog_2199	237.8	0	transposase	integration and excision
UniRef90	UHGV-0207028_46	UniRef90_A0A3A8W9F2	783.0	0	IS110 family transposase	N/A
eggNOG-mapper	UHGV-0207028_46	545696.HOLDEFILI_02402	766.0	0	Transposase IS116/IS110/IS902 family	N/A
Pfam	UHGV-0207028_46	PF01548	N/A	N/A	Transposase	DEDD_Tnp_IS110
Pfam	UHGV-0207028_46	PF02371	N/A	N/A	Transposase IS116/IS110/IS902 family	Transposase_20
NCBIFam	UHGV-0207028_46	NF033542.1	N/A	N/A	IS110 family transposase	N/A
COG	UHGV-0207028_46	COG3547	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0207028_46	PF01548,PF02371,MF_00651,NF033542,COG3547	N/A	N/A	N/A	N/A