UHGV-0207743 (vOTU-093264)

Viral Genome: UHGV-0207743

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0207743
vOTU ID	vOTU-093264
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11893709_a1_ct2254_vs1@linear@Podoviridae__sp._ct00U1
Associated BioSample	SAMN11893709
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.22 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.1
Jumbo phage	No

Genome content
Genome length (bp)	34,182
GC content	50.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	90%
Average CDS length (bps)	529.19
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0207743_1	PF11607,MF_00436,NF011232,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_2	phrog_2303	59.5	6.5e-17	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0207743_2	1226322.HMPREF1545_00049	265.0	0	N/A	N/A
AcrCatalog	UHGV-0207743_2	cluster_74817	53.9	0.0000000000232	NA	N/A
PHROG	UHGV-0207743_3	phrog_10	173.4	0	major head protein	head and packaging
UniRef90	UHGV-0207743_3	UniRef90_U2SBS0	619.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0207743_3	1226322.HMPREF1545_00050	619.0	0	Phage capsid family	N/A
Pfam	UHGV-0207743_3	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0207743_3	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0207743_3	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0207743_3	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_4	phrog_541	107.6	7.1e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-0207743_4	1120998.AUFC01000030_gene2237	66.2	0.00000000000485	N/A	N/A
PHROG	UHGV-0207743_5	phrog_3366	98.9	4.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0207743_5	1226322.HMPREF1545_00053	154.0	0	N/A	N/A
structural_annotation	UHGV-0207743_5	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_6	phrog_556	67.5	1.5e-19	minor head protein	head and packaging
UniRef90	UHGV-0207743_6	UniRef90_A0A1C5N8K8	273.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0207743_6	1226322.HMPREF1545_00054	158.0	0	Minor capsid protein	N/A
Pfam	UHGV-0207743_6	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0207743_6	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_7	phrog_3266	47.0	0.00000000000036	tail completion	connector
UniRef90	UHGV-0207743_7	UniRef90_A0A2Z4QA01	105.0	9.36e-27	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0207743_7	1232443.BAIA02000078_gene24	127.0	9.98e-36	N/A	N/A
structural_annotation	UHGV-0207743_7	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_8	phrog_3707	41.9	0.0000000000091	membrane-flanked domain	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0207743_8	UniRef90_A0A1C5N7Y8	323.0	0	Bacterial membrane flanked domain	N/A
eggNOG-mapper	UHGV-0207743_8	469604.HMPREF0946_01104	70.9	0.000000000000402	Bacterial PH domain	N/A
Pfam	UHGV-0207743_8	PF03703	N/A	N/A	Bacterial PH domain	bPH_2
COG	UHGV-0207743_8	COG3428	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207743_9	877415.JNJQ01000019_gene1782	60.8	0.0000000264	N/A	N/A
PHROG	UHGV-0207743_10	phrog_3099	124.1	9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0207743_10	645991.Sgly_0346	108.0	8.03e-28	N/A	N/A
structural_annotation	UHGV-0207743_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_11	phrog_11299	45.4	0.0000000000011	N/A	unknown function
UniRef90	UHGV-0207743_11	UniRef90_A0A2Z4QA03	102.0	4.32e-25	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-0207743_11	1120746.CCNL01000014_gene2103	112.0	8.53e-30	N/A	N/A
structural_annotation	UHGV-0207743_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_12	phrog_706	85.1	8.7e-25	N/A	unknown function
UniRef90	UHGV-0207743_12	UniRef90_A0A1C5N876	392.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0207743_12	999411.HMPREF1092_03313	72.8	0.000000000000259	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0207743_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0207743_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_13	phrog_1535	365.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0207743_13	UniRef90_A0A1C5N801	1355.0	0	ATPase involved in DNA repair	N/A
eggNOG-mapper	UHGV-0207743_13	673837.D2IZU8_9CAUD	176.0	3.20057e-42	peptidoglycan catabolic process	N/A
PHROG	UHGV-0207743_14	phrog_1194	73.1	3.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0207743_14	1120998.AUFC01000030_gene2246	125.0	8.09e-34	N/A	N/A
structural_annotation	UHGV-0207743_14	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_15	phrog_32744	684.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0207743_15	1120998.AUFC01000030_gene2247	238.0	0	N/A	N/A
structural_annotation	UHGV-0207743_15	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207743_17	1297617.JPJD01000099_gene2171	108.0	1.13e-24	Collagen triple helix repeat protein	N/A
COG	UHGV-0207743_17	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0207743_17	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_18	phrog_13589	72.6	1.80067e-42	N/A	unknown function
eggNOG-mapper	UHGV-0207743_18	411471.SUBVAR_06929	323.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0207743_18	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0207743_22	phrog_937	55.2	0.0000000000000012	hemolysin	other
eggNOG-mapper	UHGV-0207743_22	1232443.BAIA02000135_gene1405	102.0	1.39e-26	N/A	N/A
PHROG	UHGV-0207743_23	phrog_1129	68.9	5.1e-20	holin	lysis
UniRef90	UHGV-0207743_23	UniRef90_A0A416QZD1	126.0	3.54e-36	Enolase	N/A
eggNOG-mapper	UHGV-0207743_23	1007096.BAGW01000036_gene2663	125.0	2.09e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0207743_23	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0207743_23	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0207743_25	K01447	67.3	2.9e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0207743_25	phrog_15001	171.2	0	endolysin	lysis
UniRef90	UHGV-0207743_25	UniRef90_A0A1C6D3S9	508.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0207743_25	1378168.N510_01539	313.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0207743_25	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0207743_25	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0207743_25	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207743_26	PF16509,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207743_28	445972.ANACOL_01878	62.8	0.000000000347	N/A	N/A
PHROG	UHGV-0207743_30	phrog_16490	265.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0207743_30	1408437.JNJN01000043_gene803	296.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207743_31	1408437.JNJN01000043_gene802	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207743_32	1378168.N510_03079	122.0	1.47e-30	N/A	N/A
KOfam	UHGV-0207743_33	K14059	225.8	0	int; integrase	N/A
PHROG	UHGV-0207743_33	phrog_1	215.1	0	integrase	integration and excision
UniRef90	UHGV-0207743_33	UniRef90_A0A1C5N3H1	731.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0207743_33	1321814.HMPREF9089_00905	210.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0207743_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0207743_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0207743_33	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_34	phrog_33872	54.3	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0207743_34	693746.OBV_19740	48.1	0.00001	N/A	N/A
PHROG	UHGV-0207743_35	phrog_37750	88.3	8.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0207743_35	1087481.AGFX01000037_gene4346	101.0	1.32e-23	N/A	N/A
KOfam	UHGV-0207743_37	K18830	62.5	4.9e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0207743_37	phrog_8	52.2	0.0000000000000099	transcriptional regulator	transcription regulation
UniRef90	UHGV-0207743_37	UniRef90_A0A1C5N467	175.0	0	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0207743_37	411471.SUBVAR_05818	98.2	8.17e-25	sequence-specific DNA binding	N/A
Pfam	UHGV-0207743_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0207743_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0207743_37	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207743_46	PF13560	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_47	phrog_5070	197.9	0	N/A	unknown function
UniRef90	UHGV-0207743_47	UniRef90_B0PAM0	116.0	1.35e-28	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0207743_47	445972.ANACOL_01820	116.0	2.26e-29	COG NOG06285 non supervised orthologous group	N/A
Pfam	UHGV-0207743_47	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0207743_47	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0207743_47	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_49	phrog_253	109.5	2.9e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207743_49	UniRef90_A0A1C5N4H2	306.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0207743_49	411470.RUMGNA_02192	133.0	1.41e-37	Siphovirus Gp157	N/A
Pfam	UHGV-0207743_49	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0207743_49	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_50	phrog_14970	174.4	0	N/A	unknown function
UniRef90	UHGV-0207743_50	UniRef90_UPI00164BFA28	154.0	8.40779e-45	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0207743_50	1410632.JHWW01000001_gene1266	151.0	2.9147e-43	double-strand break repair protein	N/A
Pfam	UHGV-0207743_50	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0207743_50	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0207743_50	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_51	phrog_1389	68.0	1.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0207743_51	1347392.CCEZ01000060_gene3269	101.0	1.78e-26	N/A	N/A
structural_annotation	UHGV-0207743_51	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_52	phrog_7370	47.5	0.00000000000029	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207743_52	UniRef90_A0A2Z4QA94	162.0	0	Recombination protein	N/A
eggNOG-mapper	UHGV-0207743_52	445972.ANACOL_01826	70.1	0.0000000000000426	HNH nucleases	N/A
Pfam	UHGV-0207743_52	PF13391	N/A	N/A	HNH endonuclease	HNH_2
KOfam	UHGV-0207743_53	K03111	153.6	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0207743_53	phrog_44	154.8	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207743_53	UniRef90_A0A1C6B8W9	255.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0207743_53	1378168.N510_01674	218.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0207743_53	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0207743_53	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0207743_53	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0207743_53	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0207743_53	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_54	phrog_186	48.6	0.00000000000015	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
NCBIFam	UHGV-0207743_54	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
KOfam	UHGV-0207743_55	K17680	178.3	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0207743_55	phrog_239	154.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207743_55	UniRef90_A0A1C5N602	849.0	0	DNA repair protein RadA	N/A
eggNOG-mapper	UHGV-0207743_55	1378168.N510_01441	528.0	0	N/A	N/A
Pfam	UHGV-0207743_55	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0207743_55	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0207743_55	PF03796,MF_04154,NF006606,COG0467	N/A	N/A	N/A	N/A
KOfam	UHGV-0207743_56	K01160	52.9	0.00000000000001	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0207743_56	phrog_1682	72.2	8.2e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207743_56	UniRef90_A0A1C5N534	245.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0207743_56	1235790.C805_00029	140.0	1.29004e-41	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0207743_56	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0207743_56	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207743_57	UniRef90_UPI0018AC14ED	81.6	1.76e-18	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0207743_57	1226322.HMPREF1545_00021	53.9	0.0000000514	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-0207743_57	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0207743_58	phrog_954	171.4	0	DNA methyltransferase	other
UniRef90	UHGV-0207743_58	UniRef90_UPI00195B0EE7	250.0	0	methyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-0207743_58	411461.DORFOR_01143	230.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0207743_58	MTase_II_00074	168.1	0	Type II methyltransferase	RM
Pfam	UHGV-0207743_58	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0207743_58	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0207743_58	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A