UHGV-0207875 (vOTU-167742)

Viral Genome: UHGV-0207875

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0207875
vOTU ID	vOTU-167742
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252277_a1_ct159831_vs1@Siphoviridae__sp._ctqTu1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.07 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.49
Jumbo phage	No

Genome content
Genome length (bp)	25,227
GC content	46.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	92%
Average CDS length (bps)	513.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0207875_1	phrog_1204	90.3	1.6e-26	tail protein	tail
COG	UHGV-0207875_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0207875_2	phrog_202	78.9	7.59504e-43	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0207875_2	1158610.UC3_03184	61.2	0.000000256	Phage tail protein	N/A
Pfam	UHGV-0207875_2	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0207875_2	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0207875_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0207875_2	PF05709,PF11614,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0207875_3	phrog_9478	173.7	0	minor tail protein	tail
eggNOG-mapper	UHGV-0207875_3	476272.RUMHYD_02865	204.0	0	N/A	N/A
NCBIFam	UHGV-0207875_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0207875_3	PF14594,PF08931,PF20942,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207875_4	PF03422	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207875_6	1042156.CXIVA_01580	73.9	0.00000000000000141	N/A	N/A
PHROG	UHGV-0207875_7	phrog_1129	77.0	1.3e-22	holin	lysis
UniRef90	UHGV-0207875_7	UniRef90_A0A2S0L5I2	98.6	2.01e-24	Holin	N/A
eggNOG-mapper	UHGV-0207875_7	1256908.HMPREF0373_00463	70.1	0.0000000000000296	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0207875_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0207875_7	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0207875_8	K01448	98.3	8.7e-29	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0207875_8	phrog_435	129.1	3.8e-38	endolysin	lysis
UniRef90	UHGV-0207875_8	UniRef90_A0A6N7X525	266.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0207875_8	1392487.JIAD01000001_gene506	205.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0207875_8	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0207875_8	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0207875_8	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
COG	UHGV-0207875_9	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207875_9	PF18341,NF040678,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0207875_10	phrog_21718	52.5	0.0000000000000078	N/A	unknown function
eggNOG-mapper	UHGV-0207875_10	397290.C810_05210	59.3	0.00000000251	N/A	N/A
eggNOG-mapper	UHGV-0207875_11	476272.RUMHYD_01770	91.3	4.53e-20	N/A	N/A
UniRef90	UHGV-0207875_12	UniRef90_A0A345BNU6	54.7	0.000001	Spore surface glycoprotein	N/A
structural_annotation	UHGV-0207875_12	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207875_14	UniRef90_R6GNZ5	105.0	1.02e-24	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0207875_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0207875_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0207875_14	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0207875_15	K14059	211.0	0	int; integrase	N/A
PHROG	UHGV-0207875_15	phrog_1	182.7	0	integrase	integration and excision
UniRef90	UHGV-0207875_15	UniRef90_A0A7Y9B158	313.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0207875_15	936375.HMPREF1152_0651	302.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0207875_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0207875_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0207875_15	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0207875_16	K22300	65.0	1.7e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0207875_16	phrog_8	71.9	1.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0207875_16	UniRef90_UPI00135AEB63	76.6	0.00000000000000448	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0207875_16	697329.Rumal_3450	70.1	0.000000000000769	N/A	N/A
Pfam	UHGV-0207875_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0207875_16	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0207875_16	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207875_17	718252.FP2_01130	50.4	0.000000175	N/A	N/A
structural_annotation	UHGV-0207875_17	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0207875_18	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0207875_18	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0207875_18	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0207875_18	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0207875_23	phrog_14970	261.2	0	N/A	unknown function
UniRef90	UHGV-0207875_23	UniRef90_A0A3P6JH63	213.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0207875_23	411468.CLOSCI_00315	223.0	0	double-strand break repair protein	N/A
COG	UHGV-0207875_23	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0207875_23	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0207875_24	phrog_7566	104.5	4.8e-31	N/A	unknown function
UniRef90	UHGV-0207875_24	UniRef90_UPI001C1E3E38	63.9	0.0000000000282	phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0207875_24	1304866.K413DRAFT_1198	82.4	2.69e-19	N/A	N/A
PHROG	UHGV-0207875_25	phrog_72	70.8	1.5e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207875_25	UniRef90_A0A8D9PDS2	115.0	3.99e-29	NinB protein	N/A
eggNOG-mapper	UHGV-0207875_25	445972.ANACOL_01825	102.0	3.84e-25	N/A	N/A
KOfam	UHGV-0207875_26	K03111	141.9	6.19934e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0207875_26	phrog_44	137.3	9.70007e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207875_26	UniRef90_A0A6N7XL53	149.0	9.80909e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0207875_26	936375.HMPREF1152_1764	144.0	1.8399e-42	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0207875_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0207875_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0207875_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0207875_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0207875_26	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0207875_27	phrog_8489	173.2	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207875_27	UniRef90_I8RAX4	189.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-0207875_27	1136177.KCA1_1070	189.0	0	DnaD domain protein	N/A
COG	UHGV-0207875_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0207875_27	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0207875_29	phrog_253	114.8	6.8e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207875_29	UniRef90_A7B3R2	153.0	7.00649e-45	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0207875_29	411470.RUMGNA_02192	153.0	1.4013e-45	Siphovirus Gp157	N/A
Pfam	UHGV-0207875_29	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0207875_29	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207875_30	UniRef90_UPI0012923FF4	99.0	8.21e-26	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0207875_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0207875_30	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0207875_33	phrog_190	134.4	6.8e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207875_33	UniRef90_A0A6N7XIA3	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207875_33	1236514.BAKL01000051_gene3708	112.0	6.85e-31	N/A	N/A
Pfam	UHGV-0207875_33	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0207875_33	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0207875_43	phrog_36	66.7	4e-19	transcriptional regulator	transcription regulation
Pfam	UHGV-0207875_43	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0207875_43	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0207875_43	PF04545,PF01920,MF_00674,TIGR01637,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0207875_45	K03497	63.9	4e-18	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0207875_45	phrog_18056	99.4	3.3e-29	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207875_45	UniRef90_UPI001F04E36C	104.0	1.6e-27	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0207875_45	1423758.BN55_01455	107.0	6.38e-27	DNA methylase	N/A
PADLOC	UHGV-0207875_45	MTase_II_00015	57.4	3.5e-16	Type II methyltransferase	RM
Pfam	UHGV-0207875_45	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0207875_45	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0207875_45	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A