UHGV-0207905 (vOTU-068867)

Viral Genome: UHGV-0207905

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0207905
vOTU ID	vOTU-068867
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781764_a1_ct379828_vs1@Myoviridae__sp._ctgIE1
Associated BioSample	SAMN09781764
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.81
Jumbo phage	No

Genome content
Genome length (bp)	39,585
GC content	60.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	91%
Average CDS length (bps)	565.08
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0207905_1	phrog_361	85.2	6.6e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0207905_1	UniRef90_UPI001494A551	101.0	2.48e-25	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0207905_1	1033744.CAEL01000029_gene1286	98.2	9.84e-25	Phage terminase, small subunit	N/A
Pfam	UHGV-0207905_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0207905_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_2	phrog_9	278.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0207905_2	UniRef90_A0A7C6PV87	845.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0207905_2	1226322.HMPREF1545_00113	734.0	0	Phage Terminase	N/A
Pfam	UHGV-0207905_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0207905_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0207905_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0207905_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_3	phrog_12	187.4	0	portal protein	head and packaging
UniRef90	UHGV-0207905_3	UniRef90_A0A3D3WAI0	496.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0207905_3	913865.DOT_5635	489.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0207905_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0207905_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0207905_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0207905_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0207905_4	K06904	146.4	2.49431e-43	N/A	N/A
PHROG	UHGV-0207905_4	phrog_80	173.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0207905_4	UniRef90_A0A0L6JGJ8	265.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0207905_4	398512.JQKC01000009_gene450	265.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0207905_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0207905_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0207905_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0207905_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_5	phrog_10	172.7	0	major head protein	head and packaging
UniRef90	UHGV-0207905_5	UniRef90_A0A8F2EZ71	433.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0207905_5	1235798.C817_04585	369.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0207905_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0207905_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0207905_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0207905_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
COG	UHGV-0207905_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
PHROG	UHGV-0207905_7	phrog_2550	47.0	0.00000000000027	N/A	unknown function
structural_annotation	UHGV-0207905_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207905_9	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207905_10	UniRef90_A4J7Q8	91.3	9.93e-21	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0207905_10	349161.Dred_2601	91.3	1.67e-21	Phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0207905_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0207905_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_11	phrog_88	114.0	1.1e-33	major tail protein	tail
UniRef90	UHGV-0207905_11	UniRef90_A0A4S2ACT6	110.0	9.59e-27	Phage tail protein	N/A
eggNOG-mapper	UHGV-0207905_11	97139.C824_05965	86.7	3.5e-18	N/A	N/A
NCBIFam	UHGV-0207905_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0207905_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_13	phrog_1535	99.1	3.7e-29	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0207905_13	97139.C824_02812	181.0	3.08286e-43	phage tail tape measure protein	N/A
COG	UHGV-0207905_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0207905_14	phrog_36410	129.3	1.1e-38	N/A	unknown function
UniRef90	UHGV-0207905_14	UniRef90_A0A6N8HCA3	258.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0207905_14	1211817.CCAT010000079_gene1379	182.0	0	Phage tail protein	N/A
Pfam	UHGV-0207905_14	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0207905_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0207905_14	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_15	phrog_538	214.5	0	minor tail protein	tail
UniRef90	UHGV-0207905_15	UniRef90_A0A1H0EA67	244.0	0	Virus ReqiPepy6 Gp37-like protein	N/A
eggNOG-mapper	UHGV-0207905_15	411470.RUMGNA_02078	191.0	0	N/A	N/A
Pfam	UHGV-0207905_15	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0207905_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_16	phrog_1220	293.8	0	head protein	head and packaging
UniRef90	UHGV-0207905_16	UniRef90_E2ELJ8	164.0	2.52234e-44	Truncated putative phage structural protein	N/A
eggNOG-mapper	UHGV-0207905_16	864178.E2ELJ8_9CAUD	164.0	4.2039e-45	cell adhesion	N/A
structural_annotation	UHGV-0207905_16	PF20747	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207905_17	PF21722	N/A	N/A	N/A	N/A
Pfam	UHGV-0207905_19	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0207905_20	PF16640,NF033510,COG4549	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_22	phrog_13589	45.8	1.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0207905_22	411471.SUBVAR_06929	291.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0207905_22	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0207905_23	658086.HMPREF0994_01093	71.6	0.0000000000967	cellulose binding	N/A
Pfam	UHGV-0207905_23	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
COG	UHGV-0207905_23	COG4447	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207905_24	UniRef90_A0A1Q6JJY2	214.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0207905_24	871963.Desdi_1346	126.0	6.15e-31	NLP P60 protein	N/A
COG	UHGV-0207905_24	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0207905_24	PF00877,NF033742,COG0791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207905_26	411470.RUMGNA_00254	81.3	3.76e-19	N/A	N/A
Pfam	UHGV-0207905_27	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0207905_27	PF08281,MF_00245,NF001070,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207905_29	UniRef90_UPI0008F814CA	59.7	0.00000000236	helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-0207905_31	phrog_13470	51.2	0.0000000000000046	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207905_31	UniRef90_UPI0006D56AE3	122.0	1.6e-30	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0207905_31	887929.HMP0721_2409	104.0	4.27e-24	N/A	N/A
structural_annotation	UHGV-0207905_31	PF18337,PF00847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207905_32	1118055.CAGU01000028_gene99	52.4	0.000000843	N/A	N/A
structural_annotation	UHGV-0207905_32	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207905_35	476272.RUMHYD_01953	47.0	0.00000658	N/A	N/A
PHROG	UHGV-0207905_36	phrog_16490	157.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0207905_36	1408437.JNJN01000043_gene803	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207905_37	1408437.JNJN01000043_gene802	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207905_38	1408437.JNJN01000043_gene801	75.9	0.0000000000000474	N/A	N/A
KOfam	UHGV-0207905_39	K06400	239.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0207905_39	phrog_95	261.5	0	integrase	integration and excision
UniRef90	UHGV-0207905_39	UniRef90_A0A352UMB6	360.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0207905_39	999413.HMPREF1094_00247	336.0	0	Recombinase	N/A
Pfam	UHGV-0207905_39	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0207905_39	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0207905_39	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0207905_39	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0207905_39	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207905_41	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207905_43	UniRef90_A0A0X8KAM4	80.1	2.54e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0207905_43	742741.HMPREF9475_00400	59.7	0.00000000128	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0207905_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0207905_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_50	phrog_26861	65.4	4e-19	N/A	unknown function
UniRef90	UHGV-0207905_50	UniRef90_A0A2I0N053	127.0	9.13e-33	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0207905_50	1235802.C823_04125	110.0	2.86e-27	N/A	N/A
Pfam	UHGV-0207905_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0207905_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0207905_50	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_51	phrog_3584	182.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207905_51	UniRef90_I2E8X7	105.0	5.84e-24	Gp31	N/A
eggNOG-mapper	UHGV-0207905_51	411902.CLOBOL_03891	88.6	8.14e-18	N/A	N/A
structural_annotation	UHGV-0207905_51	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_52	phrog_24518	67.8	1.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0207905_52	1519439.JPJG01000077_gene922	65.1	0.000000000261	N/A	N/A
PHROG	UHGV-0207905_53	phrog_111	148.2	4.06377e-44	DNA methyltransferase	other
UniRef90	UHGV-0207905_53	UniRef90_UPI00119DBE09	212.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0207905_53	1450694.BTS2_0497	201.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0207905_53	oMTase_00015	152.0	2.8026e-45	orphan methyltransferase	RM
Pfam	UHGV-0207905_53	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0207905_53	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_54	phrog_3301	125.7	2.2e-37	pyrophosphatase	other
eggNOG-mapper	UHGV-0207905_54	1226322.HMPREF1545_04060	112.0	3.08e-30	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-0207905_54	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0207905_54	COG1694	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207905_55	UniRef90_A0A1Q6V1V0	52.0	0.00000103	N/A	N/A
PHROG	UHGV-0207905_58	phrog_7704	54.6	0.0000000000000019	N/A	unknown function
UniRef90	UHGV-0207905_58	UniRef90_A0A6I7G0Z3	65.9	0.0000000000118	N/A	N/A
eggNOG-mapper	UHGV-0207905_58	1316932.MHH_c17560	50.8	0.00000604	N/A	N/A
Pfam	UHGV-0207905_58	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0207905_60	phrog_954	188.8	0	DNA methyltransferase	other
UniRef90	UHGV-0207905_60	UniRef90_UPI001CBC3FC3	184.0	0	class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0207905_60	1395513.P343_12775	183.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-0207905_60	MTase_II_00074	173.5	0	Type II methyltransferase	RM
Pfam	UHGV-0207905_60	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0207905_60	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0207905_60	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
KOfam	UHGV-0207905_61	K03465	190.5	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0207905_61	phrog_85	139.8	1.29998e-41	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207905_61	UniRef90_A0A1Y3WR29	224.0	0	Thymidylate synthase (FAD)	N/A
eggNOG-mapper	UHGV-0207905_61	720554.Clocl_3035	204.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0207905_61	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0207905_61	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0207905_61	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0207905_61	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0207905_62	phrog_824	142.9	8.39378e-43	N/A	unknown function
UniRef90	UHGV-0207905_62	UniRef90_A0A7X5R6P7	142.0	4.43006e-41	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0207905_62	1291050.JAGE01000001_gene480	113.0	1.79e-30	VRR_NUC	N/A
Pfam	UHGV-0207905_62	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0207905_63	phrog_11237	56.0	8.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0207905_63	610130.Closa_0738	57.8	0.00000000906	N/A	N/A
PHROG	UHGV-0207905_64	phrog_119	67.6	1.7e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207905_64	UniRef90_A0A3D1WPA8	105.0	2.87e-27	C2H2-type domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0207905_64	358681.BBR47_29120	60.8	0.0000000000643	HNH nucleases	N/A
Pfam	UHGV-0207905_64	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0207905_64	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A