UHGV-0208132 (vOTU-065864)

Viral Genome: UHGV-0208132

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0208132
vOTU ID	vOTU-065864
Representative Genome?	Yes
Source	CHVD
Original genome ID	SRS018656_a1_ct1_vs1@Siphoviridae__sp._ctn761
Associated BioSample	SAMN00039874
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.48 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9735
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.97
Jumbo phage	No

Genome content
Genome length (bp)	33,945
GC content	40.58%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	84%
Average CDS length (bps)	660.84
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0208132_1	PF10651,NF032891,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_2	phrog_1067	102.6	9.1e-31	minor head protein	head and packaging
UniRef90	UHGV-0208132_2	UniRef90_A0A348ZBV6	152.0	6.8e-39	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0208132_2	1462527.CCDM010000003_gene3730	66.6	0.00000000678	gp58-like protein	N/A
Pfam	UHGV-0208132_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0208132_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0208132_2	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208132_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_3	phrog_33	83.3	4.8e-24	distal tail protein Dit	tail
UniRef90	UHGV-0208132_3	UniRef90_A0A1G5CPA2	130.0	2.59e-33	Phage-related protein	N/A
eggNOG-mapper	UHGV-0208132_3	1160721.RBI_I01575	88.2	4.97e-18	Phage tail protein	N/A
COG	UHGV-0208132_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0208132_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0208132_4	K20283	72.3	8e-22	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0208132_4	phrog_1272	260.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0208132_4	UniRef90_A0A412ULX0	1705.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0208132_4	588581.Cpap_1264	251.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0208132_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0208132_4	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0208132_4	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208132_6	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_7	phrog_88	76.1	4.3e-22	major tail protein	tail
UniRef90	UHGV-0208132_7	UniRef90_A0A1G5CNS8	152.0	3.89561e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0208132_7	1321782.HMPREF1986_01362	65.5	0.000000000139	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0208132_7	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0208132_7	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0208132_8	UniRef90_UPI000E5564A4	270.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0208132_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0208132_8	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0208132_9	879305.HMPREF9290_0134	49.3	0.00000571	N/A	N/A
structural_annotation	UHGV-0208132_9	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_10	phrog_19734	71.7	8.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0208132_10	86416.Clopa_0343	60.5	0.000000000326	N/A	N/A
NCBIFam	UHGV-0208132_10	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0208132_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_11	phrog_749	56.5	4.1e-16	N/A	unknown function
UniRef90	UHGV-0208132_11	UniRef90_A0A1G5CMX8	103.0	1.01e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0208132_11	1211817.CCAT010000053_gene2133	57.4	0.00000000233	N/A	N/A
PHROG	UHGV-0208132_12	phrog_10	129.5	2.9e-38	major head protein	head and packaging
UniRef90	UHGV-0208132_12	UniRef90_A0A412ULW9	731.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0208132_12	1211817.CCAT010000053_gene2132	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0208132_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0208132_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0208132_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0208132_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0208132_13	K01358	142.4	3.99931e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0208132_13	phrog_94	212.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0208132_13	UniRef90_A0A412ULU1	454.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0208132_13	86416.Clopa_0340	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0208132_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0208132_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0208132_13	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_14	phrog_12	99.9	1.9e-29	portal protein	head and packaging
UniRef90	UHGV-0208132_14	UniRef90_A0A412ULV9	750.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0208132_14	1415774.U728_1254	264.0	0	Phage portal protein	N/A
Pfam	UHGV-0208132_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0208132_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0208132_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0208132_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_15	phrog_9	301.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0208132_15	UniRef90_A0A412UM03	1003.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0208132_15	86416.Clopa_0337	629.0	0	Phage Terminase	N/A
Pfam	UHGV-0208132_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0208132_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0208132_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0208132_15	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_16	phrog_5110	82.7	2.9e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0208132_16	UniRef90_A0A1M5U1D5	114.0	8.42e-31	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0208132_16	86416.Clopa_0336	100.0	2.96e-26	N/A	N/A
Pfam	UHGV-0208132_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0208132_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_17	phrog_119	69.8	3.6e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208132_17	UniRef90_A0A412ULY9	219.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0208132_17	1158607.UAU_01026	102.0	1.02e-26	HNH endonuclease	N/A
Pfam	UHGV-0208132_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0208132_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0208132_18	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_19	phrog_3584	152.7	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0208132_19	1235800.C819_00515	71.2	0.00000000000707	N/A	N/A
structural_annotation	UHGV-0208132_19	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_22	phrog_8684	94.2	7.6e-28	N/A	unknown function
UniRef90	UHGV-0208132_22	UniRef90_A0A374DV44	176.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0208132_22	563031.HMPREF0666_01127	82.0	2.52e-18	YopX protein	N/A
Pfam	UHGV-0208132_22	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0208132_22	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0208132_22	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_23	phrog_2118	118.1	7.4e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208132_23	UniRef90_A0A374DVG7	250.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0208132_23	610130.Closa_0730	152.0	0	HNH endonuclease	N/A
Pfam	UHGV-0208132_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0208132_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0208132_23	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_25	phrog_824	144.3	3.40516e-43	N/A	unknown function
UniRef90	UHGV-0208132_25	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0208132_25	397288.C806_00096	157.0	0	VRR_NUC	N/A
Pfam	UHGV-0208132_25	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0208132_25	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_26	phrog_24518	79.6	3.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0208132_26	1519439.JPJG01000077_gene922	107.0	1.65e-26	N/A	N/A
KOfam	UHGV-0208132_27	K03427	164.4	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0208132_27	phrog_6380	362.7	0	DNA methyltransferase	other
UniRef90	UHGV-0208132_27	UniRef90_UPI001B3C6DA9	662.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0208132_27	1444306.JFZC01000034_gene2643	321.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0208132_27	MTase_I_00005	103.7	4.9e-31	Type I methyltransferase	RM
Pfam	UHGV-0208132_27	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0208132_27	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0208132_27	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0208132_28	K03497	157.2	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0208132_28	phrog_6218	235.5	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208132_28	UniRef90_UPI000E47CAB6	791.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0208132_28	445972.ANACOL_00162	237.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0208132_28	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0208132_28	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0208132_28	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0208132_28	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208132_32	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_33	phrog_6058	42.6	0.0000000000062	N/A	unknown function
structural_annotation	UHGV-0208132_33	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_34	phrog_8684	102.3	1.6e-30	N/A	unknown function
UniRef90	UHGV-0208132_34	UniRef90_UPI000E48855B	225.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0208132_34	1450694.BTS2_0501	76.6	3.13e-16	YopX protein	N/A
Pfam	UHGV-0208132_34	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0208132_34	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0208132_34	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0208132_35	K00390	100.2	2.2e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0208132_35	phrog_424	124.2	9.1e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0208132_35	UniRef90_UPI001C034617	583.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0208132_35	1408437.JNJN01000032_gene2312	340.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0208132_35	BrxP_00001	83.6	1.5e-24	BrxP	BREX
Pfam	UHGV-0208132_35	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0208132_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0208132_35	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_37	phrog_585	115.0	4.5e-34	N/A	unknown function
UniRef90	UHGV-0208132_37	UniRef90_UPI00051C896C	143.0	1.32997e-41	N/A	N/A
eggNOG-mapper	UHGV-0208132_37	1033744.CAEL01000029_gene1306	128.0	4.7e-36	N/A	N/A
Pfam	UHGV-0208132_37	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0208132_37	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-0208132_39	UniRef90_UPI000E51362F	130.0	2.54e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0208132_39	411461.DORFOR_00030	50.8	0.000000123	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0208132_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0208132_39	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_40	phrog_8	45.1	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0208132_40	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0208132_40	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-0208132_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0208132_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0208132_40	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0208132_41	phrog_1914	145.8	2.29813e-43	N/A	unknown function
UniRef90	UHGV-0208132_41	UniRef90_UPI000E543E50	359.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0208132_41	1160721.RBI_I01604	171.0	0	N/A	N/A
Pfam	UHGV-0208132_41	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0208132_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0208132_41	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0208132_42	UniRef90_UPI000E52DA24	736.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0208132_42	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0208132_42	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-0208132_43	K14059	97.2	2.5e-28	int; integrase	N/A
PHROG	UHGV-0208132_43	phrog_1	115.7	5.3e-34	integrase	integration and excision
UniRef90	UHGV-0208132_43	UniRef90_A0A1G5CL52	792.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0208132_43	693746.OBV_41260	183.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0208132_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0208132_43	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0208132_43	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A