UHGV-0208260 (vOTU-150564)

Viral Genome: UHGV-0208260

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0208260
vOTU ID	vOTU-150564
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN10290222_a1_ct9811_vs1@linear@Myoviridae__sp._ctcTL1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.23 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.97
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.44
Jumbo phage	No

Genome content
Genome length (bp)	42,907
GC content	49.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	91%
Average CDS length (bps)	591.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0208260_1	phrog_2143	106.5	2.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-0208260_1	742823.HMPREF9465_00917	184.0	0	N/A	N/A
PHROG	UHGV-0208260_3	phrog_6465	100.1	2.6e-29	tail protein	tail
UniRef90	UHGV-0208260_3	UniRef90_G0X4V0	100.0	2.77e-22	Putative structural protein	N/A
eggNOG-mapper	UHGV-0208260_3	1042156.CXIVA_07170	115.0	3.55e-27	tail collar domain protein	N/A
COG	UHGV-0208260_3	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0208260_4	phrog_5717	86.8	1.9e-25	tail protein	tail
UniRef90	UHGV-0208260_4	UniRef90_A0A2U8UWL5	62.4	0.0000000197	Putative structural protein	N/A
eggNOG-mapper	UHGV-0208260_4	658088.HMPREF0987_01104	83.2	9.1e-16	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0208260_4	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0208260_6	phrog_31688	41.0	0.0000000000041	N/A	unknown function
eggNOG-mapper	UHGV-0208260_6	742823.HMPREF9465_00198	364.0	0	translation initiation factor activity	N/A
COG	UHGV-0208260_6	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0208260_8	phrog_1084	61.6	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0208260_8	595537.Varpa_2027	52.8	0.000000308	N/A	N/A
structural_annotation	UHGV-0208260_8	PF10651,NF032891,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0208260_9	1200557.JHWV01000006_gene1705	70.5	0.000000000158	Membrane	N/A
COG	UHGV-0208260_9	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0208260_10	phrog_12796	55.3	5.9e-16	tail fiber protein	tail
eggNOG-mapper	UHGV-0208260_10	742823.HMPREF9465_00924	247.0	0	tail collar domain protein	N/A
COG	UHGV-0208260_10	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0208260_10	PF14400,NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_11	phrog_587	103.3	1.9e-31	structural protein	head and packaging
UniRef90	UHGV-0208260_11	UniRef90_F3QJF3	163.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0208260_11	742823.HMPREF9465_00926	166.0	0	N/A	N/A
Pfam	UHGV-0208260_11	PF11041	N/A	N/A	N/A	DUF2612
structural_annotation	UHGV-0208260_11	PF11041,TIGR02242,COG3948	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_12	phrog_6	160.9	0	baseplate protein	tail
UniRef90	UHGV-0208260_12	UniRef90_A0A1C7HBN8	384.0	0	Baseplate_J domain-containing protein	N/A
eggNOG-mapper	UHGV-0208260_12	762966.HMPREF9439_01053	393.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0208260_12	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0208260_12	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208260_12	PF04865,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_13	phrog_120	62.8	5.1e-18	baseplate protein	tail
eggNOG-mapper	UHGV-0208260_13	1203554.HMPREF1476_01519	72.4	0.0000000000000102	N/A	N/A
structural_annotation	UHGV-0208260_13	PF10761,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_14	phrog_20516	46.8	0.00000000000023	N/A	unknown function
UniRef90	UHGV-0208260_14	UniRef90_K1JIF5	172.0	0	Phage_spike domain-containing protein	N/A
eggNOG-mapper	UHGV-0208260_14	742823.HMPREF9465_00928	172.0	0	Baseplate assembly protein	N/A
Pfam	UHGV-0208260_14	PF18715	N/A	N/A	Phage spike trimer	Phage_spike
Pfam	UHGV-0208260_14	PF18946	N/A	N/A	GpV Apex motif	Apex
COG	UHGV-0208260_14	COG4540	N/A	N/A	Phage P2 baseplate assembly protein gpV	N/A
structural_annotation	UHGV-0208260_14	PF18352,TIGR01644,COG4540	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_15	phrog_196	127.9	8.3e-38	virion structural protein	head and packaging
UniRef90	UHGV-0208260_15	UniRef90_F3QJE9	159.0	1.58347e-43	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0208260_15	469610.HMPREF0189_01203	174.0	0	N/A	N/A
structural_annotation	UHGV-0208260_15	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_16	phrog_349	56.9	3.3e-16	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0208260_16	742823.HMPREF9465_00930	84.0	1.49e-19	N/A	N/A
PHROG	UHGV-0208260_17	phrog_1830	115.4	4.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0208260_17	1236501.BAJU01000020_gene2008	54.3	0.00000335	N/A	N/A
Pfam	UHGV-0208260_17	PF21821	N/A	N/A	Dit-like phage tail protein	Dit_like
PHROG	UHGV-0208260_18	phrog_2276	117.5	6e-35	tail length tape measure protein	tail
UniRef90	UHGV-0208260_18	UniRef90_UPI0016436B30	93.2	1.51e-16	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0208260_18	1144672.F966_02626	65.5	0.0000000214	Belongs to the WXG100 family	N/A
COG	UHGV-0208260_18	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0208260_19	phrog_3976	43.7	0.0000000000027	N/A	unknown function
PHROG	UHGV-0208260_21	phrog_1964	77.9	1.4e-22	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0208260_21	882378.RBRH_01201	60.5	0.00000000154	N/A	N/A
structural_annotation	UHGV-0208260_21	PF11681,TIGR01603,COG3157	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_22	phrog_205	204.3	0	virion structural protein	head and packaging
UniRef90	UHGV-0208260_22	UniRef90_UPI000F0CB9E6	341.0	0	N/A	N/A
eggNOG-mapper	UHGV-0208260_22	742823.HMPREF9465_00935	306.0	0	N/A	N/A
Pfam	UHGV-0208260_22	PF11863	N/A	N/A	N/A	DUF3383
structural_annotation	UHGV-0208260_22	PF11863,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_23	phrog_1876	70.3	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0208260_23	742823.HMPREF9465_00936	92.8	4.17e-21	N/A	N/A
structural_annotation	UHGV-0208260_23	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_24	phrog_1912	59.9	4.1e-17	head protein	head and packaging
eggNOG-mapper	UHGV-0208260_24	742823.HMPREF9465_00937	94.4	1.06e-22	N/A	N/A
structural_annotation	UHGV-0208260_24	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_27	phrog_222	77.6	1.7e-22	tail protein	tail
eggNOG-mapper	UHGV-0208260_27	762966.HMPREF9439_01039	75.9	0.0000000000000273	N/A	N/A
PHROG	UHGV-0208260_29	phrog_5143	164.9	0	N/A	unknown function
UniRef90	UHGV-0208260_29	UniRef90_A0A7L6ANY3	136.0	5.5e-31	ddrB-ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0208260_29	1008459.TASI_0462	199.0	0	lyase activity	N/A
Pfam	UHGV-0208260_29	PF18763	N/A	N/A	ddrB-like ParB superfamily domain	ddrB-ParB
COG	UHGV-0208260_29	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
PHROG	UHGV-0208260_30	phrog_302	58.5	1.1e-16	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0208260_30	469610.HMPREF0189_01191	96.3	1.28e-23	N/A	N/A
Pfam	UHGV-0208260_30	PF13262	N/A	N/A	N/A	DUF4054
structural_annotation	UHGV-0208260_30	PF13262	N/A	N/A	N/A	N/A
UniRef90	UHGV-0208260_31	UniRef90_F3QJD6	135.0	1.85e-37	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0208260_31	762966.HMPREF9439_01037	135.0	3.1e-38	N/A	N/A
PHROG	UHGV-0208260_32	phrog_264	177.4	0	major head protein	head and packaging
UniRef90	UHGV-0208260_32	UniRef90_UPI0013F68C90	352.0	0	N/A	N/A
eggNOG-mapper	UHGV-0208260_32	742823.HMPREF9465_00941	350.0	0	N/A	N/A
Pfam	UHGV-0208260_32	PF09950	N/A	N/A	N/A	DUF2184
COG	UHGV-0208260_32	COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208260_32	PF09950,MF_04119,NF041155,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_33	phrog_2122	71.2	1.2e-20	minor head protein	head and packaging
eggNOG-mapper	UHGV-0208260_33	762966.HMPREF9439_01035	174.0	0	N/A	N/A
structural_annotation	UHGV-0208260_33	PF11133	N/A	N/A	N/A	N/A
KOfam	UHGV-0208260_34	K09960	227.4	0	N/A	N/A
PHROG	UHGV-0208260_34	phrog_2229	269.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0208260_34	UniRef90_UPI0013F692E2	368.0	0	N/A	N/A
eggNOG-mapper	UHGV-0208260_34	742823.HMPREF9465_00944	371.0	0	N/A	N/A
Pfam	UHGV-0208260_34	PF09979	N/A	N/A	N/A	DUF2213
COG	UHGV-0208260_34	COG3566	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208260_34	PF09979,TIGR01543,COG3566	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_35	phrog_15127	169.9	0	head protein	head and packaging
UniRef90	UHGV-0208260_35	UniRef90_A0A1Y4GG87	247.0	0	INTEIN_C_TER domain-containing protein	N/A
eggNOG-mapper	UHGV-0208260_35	742823.HMPREF9465_00945	196.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0208260_35	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0208260_35	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208260_35	NF011418,COG1372	N/A	N/A	N/A	N/A
KOfam	UHGV-0208260_36	K09961	347.1	0	N/A	N/A
PHROG	UHGV-0208260_36	phrog_146	308.0	0	portal protein	head and packaging
UniRef90	UHGV-0208260_36	UniRef90_K1JXY2	483.0	0	HI1409 family phage-associated protein	N/A
eggNOG-mapper	UHGV-0208260_36	742823.HMPREF9465_00946	483.0	0	N/A	N/A
Pfam	UHGV-0208260_36	PF06381	N/A	N/A	Anti-CBASS protein Acb1-like	Abc1-like
COG	UHGV-0208260_36	COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208260_36	PF06381,MF_04135,TIGR01555,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_38	phrog_38	411.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0208260_38	UniRef90_A0A3D3SDG7	573.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0208260_38	469610.HMPREF0189_01184	560.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0208260_38	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0208260_38	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0208260_38	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0208260_38	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0208260_38	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_39	phrog_1482	75.9	1.7e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0208260_39	UniRef90_A0A410S904	86.3	2.88e-18	Ubiquitin carboxyl-hydrolase	N/A
eggNOG-mapper	UHGV-0208260_39	546268.NEISUBOT_05160	62.0	0.000000000587	N/A	N/A
Pfam	UHGV-0208260_39	PF20901	N/A	N/A	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
structural_annotation	UHGV-0208260_39	PF20901	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208260_41	PF06530	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_44	phrog_190	67.9	1.3e-19	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208260_44	UniRef90_UPI0019D0B88F	124.0	1.34e-34	N/A	N/A
eggNOG-mapper	UHGV-0208260_44	556268.OFAG_00317	113.0	7.42e-31	N/A	N/A
Pfam	UHGV-0208260_44	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0208260_44	PF06356,MF_04160,NF033179,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0208260_47	K02315	191.5	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0208260_47	phrog_50	180.3	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208260_47	UniRef90_A0A845MUP7	179.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0208260_47	1111732.AZOD01000009_gene1223	164.0	0	DNA replication protein	N/A
Pfam	UHGV-0208260_47	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0208260_47	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0208260_47	PF01695,MF_01158,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_48	phrog_678	97.5	1.7e-28	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208260_48	UniRef90_UPI0013F65904	94.4	1.22e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0208260_48	742823.HMPREF9465_00234	70.5	0.0000000000423	Helix-turn-helix domain	N/A
Pfam	UHGV-0208260_48	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0208260_48	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-0208260_48	PF05584,MF_01909,NF040939,COG5529	N/A	N/A	N/A	N/A
COG	UHGV-0208260_50	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
structural_annotation	UHGV-0208260_50	PF15943,TIGR02607,COG4197	N/A	N/A	N/A	N/A
KOfam	UHGV-0208260_51	K01356	86.3	6e-25	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0208260_51	phrog_4	101.2	1.3e-29	transcriptional repressor	transcription regulation
UniRef90	UHGV-0208260_51	UniRef90_K1JPT9	161.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0208260_51	742823.HMPREF9465_00236	161.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0208260_51	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0208260_51	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0208260_51	PF00717,PF12844,MF_00015,NF007621,TIGR02607,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_54	phrog_3243	142.8	1.80067e-42	N/A	unknown function
eggNOG-mapper	UHGV-0208260_54	1005994.GTGU_01244	82.0	0.00000000000000428	N/A	N/A
structural_annotation	UHGV-0208260_54	PF17185,MF_00075,NF007814,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_62	phrog_155	101.5	9e-30	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208260_62	UniRef90_UPI0013F64AA6	125.0	1.4e-31	ERF family protein	N/A
eggNOG-mapper	UHGV-0208260_62	1408428.JNJP01000005_gene5	80.1	0.00000000000000473	ERF superfamily	N/A
Pfam	UHGV-0208260_62	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0208260_62	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0208260_63	K03111	132.9	3.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0208260_63	phrog_44	111.0	1.2e-32	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208260_63	UniRef90_A0A352LLW6	130.0	1.03e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0208260_63	1203554.HMPREF1476_02173	124.0	2.58e-34	Single-strand binding protein family	N/A
Pfam	UHGV-0208260_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0208260_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0208260_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0208260_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0208260_63	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0208260_64	phrog_253	87.1	2.2e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208260_64	UniRef90_UPI001898EED4	99.4	2.25e-23	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0208260_64	1226322.HMPREF1545_04074	94.7	2.36e-22	Siphovirus Gp157	N/A
Pfam	UHGV-0208260_64	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0208260_64	PF05565,NF002139	N/A	N/A	N/A	N/A