UHGV-0208645 (vOTU-127068)

Viral Genome: UHGV-0208645

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0208645
vOTU ID	vOTU-127068
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781766_a1_ct34163_vs1@Siphoviridae__sp._ct2ll1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.76 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.11
Jumbo phage	No

Genome content
Genome length (bp)	24,644
GC content	34.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	24
CDS density	92%
Average CDS length (bps)	949.38
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0208645_2	phrog_186	77.4	1.8e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208645_2	UniRef90_UPI0018A9C559	164.0	1.82169e-44	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0208645_2	1423724.BAMM01000012_gene1382	66.2	0.00000000129	N/A	N/A
Pfam	UHGV-0208645_2	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0208645_2	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0208645_2	PF13730,NF040939,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0208645_3	K00390	74.0	6.5e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0208645_3	phrog_424	164.2	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0208645_3	UniRef90_A0A0U3EGR7	341.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0208645_3	1345695.CLSA_c30150	308.0	0	N/A	N/A
Pfam	UHGV-0208645_3	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0208645_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0208645_3	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0208645_6	K01447	90.4	2.7e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0208645_6	phrog_3088	130.3	1.6e-38	amidase	lysis
UniRef90	UHGV-0208645_6	UniRef90_A0A7X9B8R6	189.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0208645_6	240302.BN982_04123	113.0	7e-27	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0208645_6	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0208645_6	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0208645_6	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0208645_6	PF01510,PF18342,NF008758,NF033202,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0208645_7	K05996	96.4	4e-28	cpt; carboxypeptidase T [EC:3.4.17.18]	N/A
PHROG	UHGV-0208645_7	phrog_4722	383.9	0	zinc carboxypeptidase	other
UniRef90	UHGV-0208645_7	UniRef90_UPI00112D5B96	297.0	0	M14 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0208645_7	1406786.U5PVX3_9CAUD	261.0	0	metallocarboxypeptidase activity	N/A
Pfam	UHGV-0208645_7	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0208645_7	PF00246	N/A	N/A	Zinc carboxypeptidase	Peptidase_M14
Pfam	UHGV-0208645_8	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0208645_8	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
Pfam	UHGV-0208645_8	PF00386	N/A	N/A	C1q domain	C1q
PHROG	UHGV-0208645_9	phrog_1067	274.7	0	minor head protein	head and packaging
UniRef90	UHGV-0208645_9	UniRef90_UPI00164A835E	592.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0208645_9	999411.HMPREF1092_03309	411.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0208645_9	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0208645_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0208645_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0208645_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0208645_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0208645_10	phrog_33	67.0	4.7e-19	distal tail protein Dit	tail
UniRef90	UHGV-0208645_10	UniRef90_UPI001C8B5B0F	150.0	1.32002e-41	phage tail family protein	N/A
eggNOG-mapper	UHGV-0208645_10	1032362.F6K8S1_9CAUD	67.8	0.0000000000941	Phage tail protein	N/A
NCBIFam	UHGV-0208645_10	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-0208645_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0208645_11	K03529	50.8	0.0000000000000087	smc; chromosome segregation protein	N/A
PHROG	UHGV-0208645_11	phrog_4704	343.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0208645_11	UniRef90_A0A7I8E085	194.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0208645_11	1415774.U728_1244	297.0	0	tail tape measure protein	N/A
Pfam	UHGV-0208645_11	PF00261	N/A	N/A	Tropomyosin	Tropomyosin
Pfam	UHGV-0208645_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0208645_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0208645_11	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0208645_11	PF10145,PF05384,TIGR01760,TIGR02559,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0208645_12	536233.CLO_1369	51.2	0.000000966	N/A	N/A
structural_annotation	UHGV-0208645_12	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0208645_13	phrog_88	73.1	3.5e-21	major tail protein	tail
eggNOG-mapper	UHGV-0208645_13	1414720.CBYM010000049_gene117	64.7	0.000000000371	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0208645_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0208645_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0208645_14	632245.CLP_2690	74.3	7.88e-16	N/A	N/A
structural_annotation	UHGV-0208645_14	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0208645_15	phrog_5	48.1	0.00000000000027	tail completion or Neck1 protein	connector
UniRef90	UHGV-0208645_15	UniRef90_UPI0018AAD4F8	112.0	5.58e-29	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0208645_15	1408424.JHYI01000032_gene3818	52.0	0.00000138	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0208645_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0208645_15	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0208645_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0208645_16	phrog_25	58.2	1.5e-16	head closure Hc1	connector
Pfam	UHGV-0208645_16	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0208645_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0208645_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0208645_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
Pfam	UHGV-0208645_17	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0208645_17	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0208645_19	phrog_10	95.7	6e-28	major head protein	head and packaging
UniRef90	UHGV-0208645_19	UniRef90_A0A1C6F7A6	237.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0208645_19	1274524.BSONL12_06133	58.5	0.00000155	capsid protein	N/A
Pfam	UHGV-0208645_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0208645_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0208645_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0208645_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0208645_20	K01358	138.3	7.00005e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0208645_20	phrog_94	215.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0208645_20	UniRef90_A0A6H3BC34	249.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0208645_20	1286171.EAL2_c11050	222.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0208645_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0208645_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0208645_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0208645_21	phrog_12	188.7	0	portal protein	head and packaging
UniRef90	UHGV-0208645_21	UniRef90_UPI0018AC7159	322.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0208645_21	536232.CLM_2056	120.0	3.29e-27	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0208645_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0208645_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0208645_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0208645_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
Pfam	UHGV-0208645_22	PF06341	N/A	N/A	N/A	DUF1056
PHROG	UHGV-0208645_23	phrog_9	298.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0208645_23	UniRef90_A0A150FQX1	616.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0208645_23	1567010.A0A0A7RU73_9VIRU	564.0	0	Phage Terminase	N/A
Pfam	UHGV-0208645_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0208645_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0208645_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0208645_24	phrog_83	72.4	7.6e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0208645_24	UniRef90_A0A1S8S9U2	136.0	3.25e-38	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0208645_24	86416.Clopa_2744	75.9	0.00000000000000358	phage terminase small subunit	N/A
Pfam	UHGV-0208645_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0208645_24	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0208645_24	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0208645_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A