UHGV-0208662 (vOTU-119258)

Viral Genome: UHGV-0208662

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0208662
vOTU ID	vOTU-119258
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN10290180_a1_ct581@circular@Siphoviridae__sp._ctglw581
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.18 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9745
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.51
Jumbo phage	No

Genome content
Genome length (bp)	47,029
GC content	38.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	96%
Average CDS length (bps)	685.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0208662_5	1444306.JFZC01000041_gene85	53.9	0.00000509	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source	N/A
COG	UHGV-0208662_5	COG0449	N/A	N/A	Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains	N/A
KOfam	UHGV-0208662_7	K03091	112.3	6e-33	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0208662_7	phrog_351	70.4	4e-28	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0208662_7	UniRef90_A0A3D2D1Z4	80.9	6.2e-16	Sigma70_r2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0208662_7	411473.RUMCAL_00267	57.4	0.000000103	sigma factor activity	N/A
Pfam	UHGV-0208662_7	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-0208662_7	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0208662_7	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0208662_7	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0208662_8	phrog_2002	91.3	6.6e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0208662_8	59241.E7DN89_BPDP1	72.0	0.0000000000000144	N/A	N/A
structural_annotation	UHGV-0208662_8	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_9	K09125	97.6	1.4e-28	yhhQ; queuosine precursor transporter	N/A
UniRef90	UHGV-0208662_9	UniRef90_UPI001E478D11	228.0	0	VUT family protein	N/A
eggNOG-mapper	UHGV-0208662_9	869209.Tresu_0959	170.0	0	Putative vitamin uptake transporter	N/A
Pfam	UHGV-0208662_9	PF02592	N/A	N/A	Putative vitamin uptake transporter	Vut_1
COG	UHGV-0208662_9	COG1738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208662_9	PF02592,MF_02088,TIGR00697,COG1738	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_11	K02343	233.7	0	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	N/A
PHROG	UHGV-0208662_11	phrog_5846	223.2	0	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208662_11	UniRef90_A8UUZ8	167.0	1.54143e-44	DNA polymerase III subunit gamma/tau	N/A
eggNOG-mapper	UHGV-0208662_11	1096769.Pelub83DRAFT_0728	163.0	4.76441e-43	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	N/A
Pfam	UHGV-0208662_11	PF13177	N/A	N/A	DNA polymerase III, delta subunit	DNA_pol3_delta2
COG	UHGV-0208662_11	COG2812	N/A	N/A	DNA polymerase III, gamma/tau subunits	N/A
structural_annotation	UHGV-0208662_11	PF13177,PF12169,PF17864,MF_01509,NF004046,COG2812	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208662_14	PF13641,MF_00057,TIGR03965,COG1216	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_15	K00059	112.3	4.3e-33	fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]	N/A
PHROG	UHGV-0208662_15	phrog_3142	79.1	4e-23	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0208662_15	UniRef90_UPI001CF81B85	193.0	0	SDR family oxidoreductase	N/A
eggNOG-mapper	UHGV-0208662_15	1280696.ATVY01000066_gene2453	169.0	0	Enoyl-(Acyl carrier protein) reductase	N/A
Pfam	UHGV-0208662_15	PF13561	N/A	N/A	Enoyl-(Acyl carrier protein) reductase	adh_short_C2
COG	UHGV-0208662_15	COG1028	N/A	N/A	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	N/A
structural_annotation	UHGV-0208662_15	PF13561,MF_01647,NF005474,COG1028	N/A	N/A	N/A	N/A
PHROG	UHGV-0208662_16	phrog_887	80.0	2.6e-23	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0208662_16	59241.E7DN71_BPDP1	81.3	0.0000000000000102	tRNA modification	N/A
structural_annotation	UHGV-0208662_16	PF00290,MF_01634,TIGR00432,COG0343	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_18	K14440	158.8	0	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0208662_18	phrog_62	206.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208662_18	UniRef90_A0A7X8ZBW6	529.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0208662_18	1084719.G3MAX4_9CAUD	122.0	3.13e-27	Type III restriction enzyme, res subunit	N/A
PADLOC	UHGV-0208662_18	DpdE_00006	72.6	3.1e-22	DpdE	DPD
Pfam	UHGV-0208662_18	PF00270	N/A	N/A	DEAD/DEAH box helicase	DEAD
Pfam	UHGV-0208662_18	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
KOfam	UHGV-0208662_20	K02335	402.7	0	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-0208662_20	phrog_17	368.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208662_20	UniRef90_A0A7X8ZBG5	856.0	0	DNA polymerase I	N/A
eggNOG-mapper	UHGV-0208662_20	871584.D9ZNH3_9CAUD	324.0	0	DNA polymerase family A	N/A
PADLOC	UHGV-0208662_20	drt-cluster58	111.2	5.7e-33	DRT	DRT
Pfam	UHGV-0208662_20	PF01612	N/A	N/A	3'-5' exonuclease	DNA_pol_A_exo1
Pfam	UHGV-0208662_20	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
structural_annotation	UHGV-0208662_20	PF00476,PF01612,MF_04101,NF004397,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0208662_22	phrog_6244	51.3	0.000000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0208662_22	657309.BXY_08750	51.2	0.00000867	YqaJ viral recombinase family	N/A
COG	UHGV-0208662_22	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
KOfam	UHGV-0208662_26	K18951	226.9	0	gp30; DNA ligase [EC:6.5.1.1]	N/A
PHROG	UHGV-0208662_26	phrog_114	235.6	0	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208662_26	UniRef90_UPI000F637511	312.0	0	ATP-dependent DNA ligase	N/A
eggNOG-mapper	UHGV-0208662_26	176279.SERP1534	220.0	0	ATP dependent DNA ligase domain	N/A
Pfam	UHGV-0208662_26	PF01068	N/A	N/A	ATP dependent DNA ligase domain	DNA_ligase_A_M
Pfam	UHGV-0208662_26	PF14743	N/A	N/A	DNA ligase OB-like domain	DNA_ligase_OB_2
COG	UHGV-0208662_26	COG1793	N/A	N/A	ATP-dependent DNA ligase	N/A
structural_annotation	UHGV-0208662_26	PF01068,PF17879,MF_00407,NF002868,COG1793	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_27	K03698	47.9	0.00000000000021	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0208662_27	phrog_28876	149.1	2.38221e-44	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0208662_27	UniRef90_A0A7G9WJU9	177.0	0	Hydrolase	N/A
eggNOG-mapper	UHGV-0208662_27	1408437.JNJN01000035_gene1812	161.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
Pfam	UHGV-0208662_27	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-0208662_27	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0208662_27	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_28	K03553	165.9	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0208662_28	phrog_97	190.8	0	UvsX-like recombinase	other
UniRef90	UHGV-0208662_28	UniRef90_E7DN79	215.0	0	RecA	N/A
eggNOG-mapper	UHGV-0208662_28	59241.E7DN79_BPDP1	215.0	0	DNA-dependent ATPase activity	N/A
Pfam	UHGV-0208662_28	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
PHROG	UHGV-0208662_32	phrog_1706	95.6	5.9e-28	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0208662_32	871584.D9ZNH8_9CAUD	113.0	2.18e-27	nuclease activity	N/A
structural_annotation	UHGV-0208662_32	PF10926,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_34	K00980	98.1	9e-29	tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]	N/A
PHROG	UHGV-0208662_34	phrog_7878	81.9	6.7e-24	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	other
UniRef90	UHGV-0208662_34	UniRef90_A0A3P2A5K9	139.0	5.24e-40	Glycerol-3-phosphate cytidylyltransferase	N/A
eggNOG-mapper	UHGV-0208662_34	1453505.JASY01000001_gene3259	110.0	5.68e-29	Cytidylyltransferase	N/A
Pfam	UHGV-0208662_34	PF01467	N/A	N/A	Cytidylyltransferase-like	CTP_transf_like
NCBIFam	UHGV-0208662_34	TIGR00125.1	N/A	N/A	adenylyltransferase/cytidyltransferase family protein	N/A
COG	UHGV-0208662_34	COG0615	N/A	N/A	Glycerol-3-phosphate cytidylyltransferase, cytidylyltransferase family	N/A
structural_annotation	UHGV-0208662_34	PF01467,MF_02115,TIGR02199,COG0615	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_35	K02316	73.7	6.8e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0208662_35	phrog_47	94.8	8.2e-28	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208662_35	UniRef90_I1TK01	81.6	0.0000000000000245	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0208662_35	1147137.I1TK01_9CAUD	81.6	0.00000000000000411	DNA primase activity	N/A
Pfam	UHGV-0208662_35	PF13155	N/A	N/A	Toprim-like	Toprim_2
structural_annotation	UHGV-0208662_35	PF01807,PF13155,PF08275,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_36	K02314	117.6	8.1e-35	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0208662_36	phrog_19	144.7	6.30584e-43	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208662_36	UniRef90_A0A843GXK0	155.0	5.34e-40	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0208662_36	59241.E7DND1_BPDP1	139.0	7.85e-34	DNA helicase activity	N/A
Pfam	UHGV-0208662_36	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
structural_annotation	UHGV-0208662_36	PF03796,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0208662_40	phrog_3754	40.8	0.000000000038	N/A	unknown function
PHROG	UHGV-0208662_43	phrog_1272	134.6	1.10002e-41	tail length tape measure protein	tail
PHROG	UHGV-0208662_51	phrog_132	57.5	1.9e-16	head-tail adaptor	connector
eggNOG-mapper	UHGV-0208662_51	1567012.A0A0A7RTF6_9VIRU	54.3	0.00000014	Phage gp6-like head-tail connector protein	N/A
PHROG	UHGV-0208662_52	phrog_29	220.0	0	major head protein	head and packaging
UniRef90	UHGV-0208662_52	UniRef90_A0A0F5HMN1	280.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0208662_52	1262449.CP6013_2085	265.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0208662_52	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0208662_52	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0208662_53	phrog_909	48.1	0.00000000000011	major head protein	head and packaging
eggNOG-mapper	UHGV-0208662_53	1391647.AVSV01000022_gene2561	50.8	0.0000091	N/A	N/A
PHROG	UHGV-0208662_54	phrog_194	70.7	2.5e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-0208662_54	UniRef90_UPI001782A5DB	55.8	0.00000282	phage scaffolding protein	N/A
Pfam	UHGV-0208662_54	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0208662_55	phrog_5	48.0	0.0000000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-0208662_55	UniRef90_G6A4P7	54.7	0.00000209	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0208662_55	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
KOfam	UHGV-0208662_56	K21138	69.5	5.8e-20	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	N/A
PHROG	UHGV-0208662_56	phrog_990	112.2	4e-33	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0208662_56	UniRef90_A0A7C6HWR0	140.0	5.41001e-40	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0208662_56	908338.HMPREF9286_1245	120.0	5.68e-33	N/A	N/A
Pfam	UHGV-0208662_56	PF13328	N/A	N/A	HD domain	HD_4
COG	UHGV-0208662_56	COG0317	N/A	N/A	(p)ppGpp synthase/hydrolase, HD superfamily	N/A
structural_annotation	UHGV-0208662_56	PF13328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0208662_58	1200557.JHWV01000008_gene2135	73.2	0.0000000000000971	membrane	N/A
COG	UHGV-0208662_58	COG2733	N/A	N/A	N/A	N/A
PHROG	UHGV-0208662_59	phrog_115	158.5	0	minor head protein	head and packaging
eggNOG-mapper	UHGV-0208662_59	743719.PaelaDRAFT_2397	106.0	5.3e-21	Phage Mu protein F like protein	N/A
Pfam	UHGV-0208662_59	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0208662_59	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0208662_59	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0208662_63	phrog_64	77.5	2.6e-23	portal protein	head and packaging
UniRef90	UHGV-0208662_63	UniRef90_UPI001BEAB1AA	79.7	0.00000000000173	phage portal protein	N/A
eggNOG-mapper	UHGV-0208662_63	1121344.JHZO01000003_gene976	71.6	0.000000000126	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0208662_63	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0208662_63	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0208662_65	K01507	49.4	0.000000000000078	ppa; inorganic pyrophosphatase [EC:3.6.1.1]	N/A
Pfam	UHGV-0208662_65	PF00719	N/A	N/A	Inorganic pyrophosphatase	Pyrophosphatase
COG	UHGV-0208662_65	COG0221	N/A	N/A	Inorganic pyrophosphatase	N/A
KOfam	UHGV-0208662_66	K06909	313.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0208662_66	phrog_3717	163.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0208662_66	UniRef90_UPI0007876F6F	363.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0208662_66	888055.HMPREF9015_01920	348.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0208662_66	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0208662_66	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0208662_66	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0208662_66	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0208662_66	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A