UHGV-0209633 (vOTU-067833)

Viral Genome: UHGV-0209633

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0209633
vOTU ID	vOTU-067833
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781763_a1_ct298260_vs1@Siphoviridae__sp._ctaD61
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.88 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.96
Jumbo phage	No

Genome content
Genome length (bp)	37,156
GC content	57.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	93%
Average CDS length (bps)	625.15
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0209633_1	phrog_144	83.1	2.7e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209633_1	UniRef90_UPI001EDE5545	124.0	4.89e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0209633_1	693746.OBV_19960	110.0	3.24e-29	HNH endonuclease	N/A
AcrCatalog	UHGV-0209633_1	cluster_19695	44.3	0.0000000357	NA	N/A
Pfam	UHGV-0209633_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0209633_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0209633_2	UniRef90_UPI001D014F8E	80.9	6.99e-19	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0209633_2	1226322.HMPREF1545_00110	68.9	0.000000000000008	Cysteine-rich KTR	N/A
Pfam	UHGV-0209633_2	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0209633_2	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_3	phrog_3584	178.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0209633_3	1203606.HMPREF1526_00985	176.0	0	N/A	N/A
structural_annotation	UHGV-0209633_3	PF01446,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209633_6	PF06289,COG1582	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_7	phrog_22543	58.4	1.4e-16	N/A	unknown function
UniRef90	UHGV-0209633_7	UniRef90_A0A8D9PDK2	55.1	0.000000117	Zinc-ribbon containing domain	N/A
KOfam	UHGV-0209633_8	K03497	84.4	2.1e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0209633_8	phrog_27290	303.5	0	N/A	unknown function
UniRef90	UHGV-0209633_8	UniRef90_G4L1G7	258.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0209633_8	693746.OBV_19860	258.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0209633_8	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0209633_8	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0209633_8	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0209633_9	K03496	188.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0209633_9	phrog_164	155.8	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209633_9	UniRef90_A0A845R968	292.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0209633_9	742738.HMPREF9460_04050	196.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0209633_9	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0209633_9	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0209633_9	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0209633_10	K02314	246.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0209633_10	phrog_19	236.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209633_10	UniRef90_A0A1Y3RCT6	333.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0209633_10	1226322.HMPREF1545_00095	280.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0209633_10	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0209633_10	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0209633_10	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0209633_10	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_11	phrog_270	124.8	8.1e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209633_11	UniRef90_UPI001F3D92C2	201.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0209633_11	742738.HMPREF9460_00851	189.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0209633_11	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0209633_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0209633_11	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0209633_17	K22300	42.5	0.000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0209633_17	UniRef90_UPI001873D032	73.2	0.0000000000000619	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0209633_17	525254.HMPREF0072_1327	54.3	0.000000609	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0209633_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0209633_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0209633_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0209633_18	K07448	115.3	5.6e-34	mrr; restriction system protein	N/A
PHROG	UHGV-0209633_18	phrog_19856	40.0	0.000000000044	N/A	unknown function
UniRef90	UHGV-0209633_18	UniRef90_A0A416IWX8	153.0	1.2906e-42	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-0209633_18	397290.C810_01426	141.0	5.48e-37	Restriction endonuclease	N/A
PADLOC	UHGV-0209633_18	ZorD1_00005	65.9	4.8e-19	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0209633_18	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0209633_18	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
UniRef90	UHGV-0209633_21	UniRef90_UPI00164AED9E	82.8	3.1e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0209633_21	1235798.C817_04600	63.5	0.0000000000173	N/A	N/A
structural_annotation	UHGV-0209633_21	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0209633_23	K07449	121.6	3.8e-36	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
eggNOG-mapper	UHGV-0209633_23	689781.AUJX01000015_gene1540	139.0	3.72e-38	restriction endonuclease	N/A
PADLOC	UHGV-0209633_23	ZorD1_00005	71.0	1.3e-20	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0209633_23	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0209633_23	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
Pfam	UHGV-0209633_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0209633_24	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0209633_25	K06400	342.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0209633_25	phrog_95	331.3	0	integrase	integration and excision
UniRef90	UHGV-0209633_25	UniRef90_A0A3A6JR24	354.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0209633_25	665956.HMPREF1032_03589	355.0	0	N/A	N/A
Pfam	UHGV-0209633_25	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0209633_25	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0209633_25	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0209633_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0209633_25	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209633_27	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_28	phrog_16490	61.3	2.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0209633_28	476272.RUMHYD_01770	69.3	0.00000000000848	N/A	N/A
structural_annotation	UHGV-0209633_31	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_32	phrog_881	87.8	6.5e-26	holin	lysis
UniRef90	UHGV-0209633_32	UniRef90_A0A4Q7P349	110.0	2.74e-30	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0209633_32	742740.HMPREF9474_02251	109.0	1.01e-30	Putative phage holin Dp-1	N/A
Pfam	UHGV-0209633_32	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0209633_32	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_33	phrog_4105	96.4	1.8e-28	N/A	unknown function
UniRef90	UHGV-0209633_33	UniRef90_A0A8D9UHA9	131.0	7.43e-38	Holin protein	N/A
eggNOG-mapper	UHGV-0209633_33	742733.HMPREF9469_05011	132.0	1.02e-38	N/A	N/A
PHROG	UHGV-0209633_34	phrog_240	64.0	2.5e-18	head protein	head and packaging
eggNOG-mapper	UHGV-0209633_34	1430331.EP10_10445	56.6	0.0000000286	Belongs to the glycosyl hydrolase 8 (cellulase D) family	N/A
COG	UHGV-0209633_34	COG3405	N/A	N/A	Endo-1,4-beta-D-glucanase Y	N/A
KOfam	UHGV-0209633_37	K22409	78.2	1e-22	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0209633_37	phrog_7698	76.6	5.3e-22	endolysin	lysis
UniRef90	UHGV-0209633_37	UniRef90_A0A316LJY5	85.1	3.29e-16	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0209633_37	994573.T472_0202030	79.7	0.00000000000000914	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0209633_37	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0209633_37	PF01476	N/A	N/A	LysM domain	LysM
Pfam	UHGV-0209633_37	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0209633_37	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0209633_37	PF01520,PF08230,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_38	phrog_372	204.1	0	tail protein	tail
UniRef90	UHGV-0209633_38	UniRef90_UPI00067EAD4C	108.0	1.64e-21	N/A	N/A
eggNOG-mapper	UHGV-0209633_38	1211844.CBLM010000016_gene1479	115.0	9.94e-25	N/A	N/A
Pfam	UHGV-0209633_38	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0209633_38	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209633_39	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_40	phrog_1194	73.5	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0209633_40	877414.ATWA01000001_gene917	109.0	6.78e-29	N/A	N/A
structural_annotation	UHGV-0209633_40	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_41	phrog_1535	114.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0209633_41	1304866.K413DRAFT_3046	91.3	0.00000000000000117	N/A	N/A
COG	UHGV-0209633_41	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0209633_42	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209633_43	UniRef90_C6CX04	82.0	7.19e-17	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0209633_43	324057.Pjdr2_1547	82.0	1.21e-17	Bacteriophage HK97-gp10, putative tail-component	N/A
PHROG	UHGV-0209633_44	phrog_25	62.3	8e-18	head closure Hc1	connector
UniRef90	UHGV-0209633_44	UniRef90_UPI001BC9CDDA	73.9	0.00000000000000839	phage head closure protein	N/A
eggNOG-mapper	UHGV-0209633_44	1388763.O165_022240	59.7	0.000000000467	head-tail adaptor	N/A
Pfam	UHGV-0209633_44	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0209633_44	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0209633_44	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0209633_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209633_46	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_47	phrog_158	51.2	0.000000000000024	major tail protein	tail
UniRef90	UHGV-0209633_47	UniRef90_R5YR40	151.0	2.8026e-44	Major tail protein putative	N/A
eggNOG-mapper	UHGV-0209633_47	1209989.TepiRe1_1157	67.4	0.00000000000215	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0209633_47	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0209633_48	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0209633_48	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_49	phrog_10	78.1	1.3e-22	major head protein	head and packaging
UniRef90	UHGV-0209633_49	UniRef90_UPI001F2CAAB7	311.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0209633_49	324057.Pjdr2_1543	92.8	6.96e-18	Phage capsid family	N/A
Pfam	UHGV-0209633_49	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0209633_49	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0209633_49	PF05065,PF14182,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0209633_50	K01358	100.5	2.4e-29	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0209633_50	phrog_94	160.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0209633_50	UniRef90_UPI001ADF09D6	138.0	6.09e-37	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0209633_50	12417.Q9T1F7_9CAUD	106.0	4.01e-25	Clp protease	N/A
Pfam	UHGV-0209633_50	PF00574	N/A	N/A	Clp protease	CLP_protease
structural_annotation	UHGV-0209633_50	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_51	phrog_12	286.7	0	portal protein	head and packaging
UniRef90	UHGV-0209633_51	UniRef90_UPI0013EF1526	402.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0209633_51	1567011.A0A0A7RUE7_9VIRU	192.0	0	Phage portal protein	N/A
Pfam	UHGV-0209633_51	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0209633_51	TIGR01537.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0209633_51	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_52	phrog_21498	300.8	0	N/A	unknown function
UniRef90	UHGV-0209633_52	UniRef90_A0A4Q5AKJ0	236.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0209633_52	78346.BRUM_0376	248.0	0	DNA binding	N/A
COG	UHGV-0209633_52	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0209633_52	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_54	phrog_9	395.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0209633_54	UniRef90_A0A096DGH7	618.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0209633_54	742738.HMPREF9460_00872	618.0	0	Phage Terminase	N/A
Pfam	UHGV-0209633_54	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0209633_54	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0209633_54	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0209633_54	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0209633_55	phrog_83	79.9	2.9e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0209633_55	UniRef90_UPI001EDE2A13	99.4	1.02e-22	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0209633_55	1120971.AUCA01000043_gene1169	78.2	0.0000000000000018	Phage terminase, small subunit	N/A
Pfam	UHGV-0209633_55	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0209633_55	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0209633_55	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A