UHGV-0209645 (vOTU-020260)

Viral Genome: UHGV-0209645

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0209645
vOTU ID	vOTU-020260
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11893695_a1_ct2186_vs1@linear@Siphoviridae__sp._ct9X21
Associated BioSample	SAMN11893695
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.53
Jumbo phage	No

Genome content
Genome length (bp)	32,159
GC content	50.29%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	88%
Average CDS length (bps)	489.26
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 74.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0209645_1	phrog_3366	95.4	5.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0209645_1	1226322.HMPREF1545_00053	186.0	0	N/A	N/A
structural_annotation	UHGV-0209645_1	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_2	phrog_556	62.1	8.9e-18	minor head protein	head and packaging
UniRef90	UHGV-0209645_2	UniRef90_A0A2U1BEM0	229.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0209645_2	1226322.HMPREF1545_00054	182.0	0	Minor capsid protein	N/A
Pfam	UHGV-0209645_2	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0209645_2	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_3	phrog_3266	58.0	1.5e-16	tail completion	connector
eggNOG-mapper	UHGV-0209645_3	1232443.BAIA02000078_gene24	238.0	0	N/A	N/A
structural_annotation	UHGV-0209645_3	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_4	phrog_3099	94.6	1.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0209645_4	1232443.BAIA02000078_gene23	276.0	0	N/A	N/A
structural_annotation	UHGV-0209645_4	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_5	phrog_11299	84.0	1.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0209645_5	693746.OBV_18160	151.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0209645_5	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_6	phrog_706	117.8	6.8e-35	N/A	unknown function
UniRef90	UHGV-0209645_6	UniRef90_UPI000682A80B	231.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0209645_6	693746.OBV_18170	216.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0209645_6	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0209645_6	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_7	phrog_1535	98.7	1.7e-29	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0209645_7	693746.OBV_18190	240.0	0	domain protein	N/A
COG	UHGV-0209645_7	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209645_7	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_8	phrog_1194	51.6	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0209645_8	693746.OBV_18200	199.0	0	N/A	N/A
structural_annotation	UHGV-0209645_8	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_9	phrog_13879	254.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0209645_9	693746.OBV_18210	531.0	0	N/A	N/A
structural_annotation	UHGV-0209645_9	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_10	phrog_1589	102.4	3.7e-30	N/A	unknown function
UniRef90	UHGV-0209645_10	UniRef90_UPI000A0361DD	82.8	0.00000000000025	fimbrillin family protein	N/A
eggNOG-mapper	UHGV-0209645_10	1449050.JNLE01000003_gene2175	77.0	0.00000000000509	Glycine rich protein	N/A
Pfam	UHGV-0209645_10	PF12810	N/A	N/A	Glycine rich protein	Gly_rich
structural_annotation	UHGV-0209645_10	PF12810,PF16893,TIGR04488,COG3979	N/A	N/A	N/A	N/A
KOfam	UHGV-0209645_11	K13276	55.7	3.4e-16	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0209645_11	phrog_11157	226.8	0	N/A	unknown function
UniRef90	UHGV-0209645_11	UniRef90_UPI001C10C6DC	416.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0209645_11	476272.RUMHYD_02867	282.0	0	N/A	N/A
Pfam	UHGV-0209645_11	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0209645_11	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0209645_11	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0209645_11	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_12	phrog_18725	100.7	8.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0209645_12	693746.OBV_18220	137.0	2.53e-38	N/A	N/A
structural_annotation	UHGV-0209645_12	PF13754,COG2372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209645_13	PF09826,MF_03001,TIGR04528,COG2706	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209645_15	1235797.C816_04174	204.0	0	N/A	N/A
structural_annotation	UHGV-0209645_15	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_16	phrog_4105	54.7	0.0000000000000017	N/A	unknown function
PHROG	UHGV-0209645_18	phrog_1129	84.1	8.8e-25	holin	lysis
UniRef90	UHGV-0209645_18	UniRef90_UPI001C124A7D	108.0	8.92e-29	phage holin family protein	N/A
eggNOG-mapper	UHGV-0209645_18	665956.HMPREF1032_01916	107.0	6.25e-29	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0209645_18	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0209645_18	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-0209645_19	K01448	84.9	9.8e-25	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0209645_19	phrog_435	108.5	8e-32	endolysin	lysis
UniRef90	UHGV-0209645_19	UniRef90_A0A564TJ46	167.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0209645_19	908340.HMPREF9406_2562	129.0	3.15e-33	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0209645_19	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0209645_19	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0209645_19	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209645_20	UniRef90_A0A1C6JAI6	63.5	0.0000000000149	RNA polymerase sigma factor, sigma-70 family	N/A
PHROG	UHGV-0209645_22	phrog_3754	82.7	2.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0209645_22	1226322.HMPREF1545_00073	151.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0209645_23	phrog_21718	131.0	6.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0209645_23	397290.C810_05210	83.2	6.53e-18	N/A	N/A
PHROG	UHGV-0209645_24	phrog_22984	104.7	4.6e-31	N/A	unknown function
PHROG	UHGV-0209645_25	phrog_16490	308.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0209645_25	1226322.HMPREF1545_00076	268.0	0	N/A	N/A
PHROG	UHGV-0209645_26	phrog_20016	242.3	0	N/A	unknown function
UniRef90	UHGV-0209645_26	UniRef90_A0A285PT46	187.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0209645_26	1226322.HMPREF1545_00077	256.0	0	N/A	N/A
structural_annotation	UHGV-0209645_26	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209645_27	476272.RUMHYD_01772	60.8	0.00000000182	N/A	N/A
eggNOG-mapper	UHGV-0209645_28	1226322.HMPREF1545_00079	141.0	3.18936e-42	N/A	N/A
KOfam	UHGV-0209645_29	K14059	159.6	0	int; integrase	N/A
PHROG	UHGV-0209645_29	phrog_1	139.4	3.20001e-41	integrase	integration and excision
UniRef90	UHGV-0209645_29	UniRef90_A0A174HFN7	389.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0209645_29	641112.ACOK01000111_gene1860	174.0	0	Phage integrase family	N/A
Pfam	UHGV-0209645_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0209645_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0209645_29	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_30	phrog_806	51.9	0.00000000000001	N/A	unknown function
UniRef90	UHGV-0209645_30	UniRef90_UPI0016446FB9	114.0	7.76e-28	N/A	N/A
eggNOG-mapper	UHGV-0209645_30	693746.OBV_43320	105.0	6.52e-26	N/A	N/A
Pfam	UHGV-0209645_30	PF11611	N/A	N/A	N/A	DUF4352
PHROG	UHGV-0209645_31	phrog_806	57.4	2.9e-16	N/A	unknown function
UniRef90	UHGV-0209645_31	UniRef90_UPI00137B5163	151.0	1.77965e-42	N/A	N/A
eggNOG-mapper	UHGV-0209645_31	397290.C810_05150	108.0	1.06e-26	N/A	N/A
Pfam	UHGV-0209645_31	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0209645_31	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0209645_32	K14056	55.1	0.0000000000000013	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-0209645_32	phrog_8	54.6	0.0000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0209645_32	UniRef90_UPI000E31F980	98.2	4.57e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0209645_32	324057.Pjdr2_5181	63.9	0.000000000013	Helix-turn-helix domain	N/A
Pfam	UHGV-0209645_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0209645_32	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
UniRef90	UHGV-0209645_33	UniRef90_UPI0013ECC13D	99.4	6.54e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0209645_33	411465.PEPMIC_00039	53.9	0.0000000122	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0209645_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0209645_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0209645_36	UniRef90_UPI000F0633F9	87.0	5.15e-21	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0209645_36	1235835.C814_03153	72.8	4.48e-16	N/A	N/A
structural_annotation	UHGV-0209645_36	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_39	phrog_659	52.1	0.0000000000000062	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209645_39	UniRef90_A0A858BRQ4	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0209645_39	1238184.CM001792_gene2550	76.6	0.0000000000000205	N/A	N/A
Pfam	UHGV-0209645_39	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0209645_39	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209645_40	1238184.CM001792_gene2549	52.4	0.00000791	N/A	N/A
structural_annotation	UHGV-0209645_40	PF12684,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_41	phrog_398	169.4	0	N/A	unknown function
UniRef90	UHGV-0209645_41	UniRef90_UPI00137B6F1E	359.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0209645_41	1485543.JMME01000021_gene802	181.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0209645_41	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0209645_41	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_42	phrog_270	89.8	4e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209645_42	UniRef90_A0A6M3JHW0	98.2	2.66e-21	Putative DNA replication protein	N/A
eggNOG-mapper	UHGV-0209645_42	1095750.HMPREF9970_1674	131.0	3.52e-34	N/A	N/A
structural_annotation	UHGV-0209645_42	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_43	phrog_9804	155.8	0	N/A	unknown function
UniRef90	UHGV-0209645_43	UniRef90_UPI0015C5D332	181.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0209645_43	1121344.JHZO01000003_gene981	184.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0209645_43	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0209645_43	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_44	phrog_4973	59.8	4.4e-17	N/A	unknown function
UniRef90	UHGV-0209645_44	UniRef90_UPI001D0904CC	82.4	3.7e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0209645_44	339671.Asuc_1218	48.9	0.00000138	Helix-turn-helix domain	N/A
Pfam	UHGV-0209645_44	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0209645_44	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0209645_45	K03111	127.1	2.2e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0209645_45	phrog_44	133.5	1.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209645_45	UniRef90_A0A3D4MTY4	204.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0209645_45	1007096.BAGW01000030_gene5	194.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0209645_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0209645_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0209645_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0209645_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0209645_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209645_47	742738.HMPREF9460_04053	57.0	0.0000000159	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0209645_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0209645_48	phrog_599	41.6	0.000000000024	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0209645_48	UniRef90_A0A4D7ANR2	83.6	1.47e-18	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0209645_48	742738.HMPREF9460_04054	82.8	4.56e-19	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0209645_48	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0209645_48	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_49	phrog_954	189.5	0	DNA methyltransferase	other
UniRef90	UHGV-0209645_49	UniRef90_A0A845R569	324.0	0	Methyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-0209645_49	411461.DORFOR_01143	254.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0209645_49	MTase_II_00074	190.6	0	Type II methyltransferase	RM
Pfam	UHGV-0209645_49	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0209645_49	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0209645_49	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0209645_51	phrog_13999	55.1	9.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0209645_51	1391428.V5KT07_9CAUD	52.8	0.0000000354	N/A	N/A
eggNOG-mapper	UHGV-0209645_53	445972.ANACOL_00167	51.2	0.000000255	N/A	N/A
PHROG	UHGV-0209645_54	phrog_38832	53.8	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0209645_54	665956.HMPREF1032_03087	92.4	4.5e-22	N/A	N/A
UniRef90	UHGV-0209645_57	UniRef90_A0A8D9PDK2	55.5	0.000000066	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0209645_58	phrog_22543	49.4	0.000000000000058	N/A	unknown function