UHGV-0209725 (vOTU-022543)

Viral Genome: UHGV-0209725

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0209725
vOTU ID	vOTU-022543
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781782_a1_ct190404_vs1@Siphoviridae__sp._ctvTl1
Associated BioSample	SAMN09781782
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.19 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.94
Jumbo phage	No

Genome content
Genome length (bp)	30,228
GC content	51.59%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	91%
Average CDS length (bps)	625.64
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0209725_1	K00558	43.9	6.2e-19	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0209725_1	phrog_16528	85.5	6.3e-25	DNA methyltransferase	other
UniRef90	UHGV-0209725_1	UniRef90_D4KCC8	168.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0209725_1	657322.FPR_26610	198.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0209725_1	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0209725_1	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0209725_2	TIGR00122,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-0209725_4	K01160	74.3	2.7e-21	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0209725_4	phrog_34	62.2	8.6e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209725_4	UniRef90_UPI0018ABA1B6	154.0	1.4013e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0209725_4	561177.ANHYDRO_01396	113.0	1.22e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0209725_4	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0209725_4	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0209725_4	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_7	phrog_22529	116.8	1e-34	N/A	unknown function
UniRef90	UHGV-0209725_7	UniRef90_A0A810Q1V0	290.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0209725_7	411463.EUBVEN_00667	102.0	6.68e-25	3D domain	N/A
Pfam	UHGV-0209725_7	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0209725_7	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0209725_7	PF06725,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_9	phrog_38832	83.1	1.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0209725_9	665956.HMPREF1032_00143	86.3	4.41e-19	N/A	N/A
structural_annotation	UHGV-0209725_9	PF11717,TIGR02450	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209725_10	PF04570	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_11	phrog_22543	41.0	0.000000000015	N/A	unknown function
UniRef90	UHGV-0209725_11	UniRef90_A0A8D9PDK2	62.0	0.00000000036	Zinc-ribbon containing domain	N/A
eggNOG-mapper	UHGV-0209725_16	693746.OBV_18010	127.0	3.34e-35	N/A	N/A
structural_annotation	UHGV-0209725_16	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_17	phrog_2657	184.7	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0209725_17	UniRef90_A0A7X5DZ93	321.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0209725_17	411490.ANACAC_00702	313.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-0209725_17	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0209725_17	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0209725_17	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0209725_17	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209725_20	UniRef90_UPI001D07B715	113.0	1.8e-28	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0209725_20	1235793.C809_00539	54.7	0.000000982	N/A	N/A
Pfam	UHGV-0209725_20	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0209725_20	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_21	phrog_6244	49.2	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0209725_21	1354300.AUQY01000005_gene215	113.0	7.32e-32	N/A	N/A
structural_annotation	UHGV-0209725_22	PF14201	N/A	N/A	N/A	N/A
KOfam	UHGV-0209725_23	K06400	188.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0209725_23	phrog_95	176.2	0	integrase	integration and excision
UniRef90	UHGV-0209725_23	UniRef90_E6UJR7	399.0	0	Resolvase domain	N/A
eggNOG-mapper	UHGV-0209725_23	697329.Rumal_3466	399.0	0	resolvase	N/A
Pfam	UHGV-0209725_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0209725_23	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0209725_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0209725_23	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0209725_24	K14060	142.8	2.49992e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0209725_24	phrog_125	182.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209725_24	UniRef90_UPI0018A0CAD3	226.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0209725_24	411467.BACCAP_02922	224.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0209725_24	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0209725_24	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0209725_24	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_26	phrog_38	150.1	1.12104e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0209725_26	UniRef90_A0A6I2QXZ5	879.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0209725_26	1298920.KI911353_gene2682	291.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0209725_26	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0209725_26	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209725_26	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_27	phrog_64	219.6	0	portal protein	head and packaging
UniRef90	UHGV-0209725_27	UniRef90_A0A6I2QXE1	688.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0209725_27	1123263.AUKY01000015_gene1609	419.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0209725_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0209725_27	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_29	phrog_1328	124.0	8.5e-37	major head protein	head and packaging
UniRef90	UHGV-0209725_29	UniRef90_UPI00164DD2D5	585.0	0	N/A	N/A
eggNOG-mapper	UHGV-0209725_29	665956.HMPREF1032_03619	226.0	0	N/A	N/A
Pfam	UHGV-0209725_29	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0209725_29	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209725_30	UniRef90_UPI001898B4B4	147.0	5.60519e-44	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0209725_30	1298920.KI911353_gene2658	56.2	0.00000000774	N/A	N/A
Pfam	UHGV-0209725_30	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0209725_30	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209725_31	1298920.KI911353_gene2656	84.7	2.52e-19	N/A	N/A
eggNOG-mapper	UHGV-0209725_32	1298920.KI911353_gene2654	62.4	0.000000000954	N/A	N/A
structural_annotation	UHGV-0209725_33	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_34	phrog_158	60.9	2.3e-17	major tail protein	tail
UniRef90	UHGV-0209725_34	UniRef90_A0A1C6L0H9	216.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0209725_34	1232453.BAIF02000058_gene1634	98.6	1.84e-24	N/A	N/A
Pfam	UHGV-0209725_34	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0209725_34	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209725_35	UniRef90_UPI0018999178	140.0	4.43006e-41	N/A	N/A
eggNOG-mapper	UHGV-0209725_35	469596.HMPREF9488_01311	92.4	6.28e-23	N/A	N/A
Pfam	UHGV-0209725_35	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0209725_35	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209725_36	1121333.JMLH01000047_gene1011	50.8	0.00000182	N/A	N/A
PHROG	UHGV-0209725_37	phrog_1535	162.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0209725_37	1121866.AUGK01000003_gene1437	275.0	0	phage tail tape measure protein	N/A
COG	UHGV-0209725_37	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0209725_38	phrog_1194	129.7	9.4e-39	N/A	unknown function
UniRef90	UHGV-0209725_38	UniRef90_A0A1Z5ISU0	107.0	1.58e-27	N/A	N/A
eggNOG-mapper	UHGV-0209725_38	673837.D2IZU9_9CAUD	117.0	2.18e-32	N/A	N/A
Pfam	UHGV-0209725_38	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0209725_38	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_39	phrog_6616	122.6	5.1e-37	tail protein	tail
UniRef90	UHGV-0209725_39	UniRef90_A0A0V8CZK7	89.4	0.0000000000000142	Gp58 domain-containing protein	N/A
eggNOG-mapper	UHGV-0209725_39	469596.HMPREF9488_01318	269.0	0	N/A	N/A
structural_annotation	UHGV-0209725_39	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_40	phrog_372	307.2	0	tail protein	tail
UniRef90	UHGV-0209725_40	UniRef90_UPI001C0AA9E4	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0209725_40	556261.HMPREF0240_01282	190.0	0	N/A	N/A
Pfam	UHGV-0209725_40	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0209725_40	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0209725_40	PF05895,PF08931,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0209725_41	phrog_314	72.0	8.6e-22	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209725_41	UniRef90_A0A075KJD6	114.0	2.54e-27	Putative truncated GIY-YIG endonuclease	N/A
eggNOG-mapper	UHGV-0209725_41	1399942.U3PCR9_9CAUD	107.0	2.59e-25	NUMOD3 motif (2 copies)	N/A
PHROG	UHGV-0209725_42	phrog_1863	64.9	3.9e-19	N/A	unknown function
UniRef90	UHGV-0209725_42	UniRef90_UPI001F223E8B	84.7	6.81e-20	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0209725_42	1226322.HMPREF1545_04027	108.0	2.8e-30	N/A	N/A
PHROG	UHGV-0209725_43	phrog_15594	78.5	5.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0209725_43	1118055.CAGU01000013_gene763	57.8	0.00000000147	N/A	N/A
structural_annotation	UHGV-0209725_43	PF16640,TIGR04488	N/A	N/A	N/A	N/A